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Aliases for TRAPPC13 Gene

Aliases for TRAPPC13 Gene

  • Trafficking Protein Particle Complex 13 2 3
  • Trs65-Related 2 3
  • C5orf44 3 4
  • Trafficking Protein Particle Complex Subunit 13 3
  • Chromosome 5 Open Reading Frame 44 2
  • UPF0533 Protein C5orf44 3

External Ids for TRAPPC13 Gene

Previous Symbols for TRAPPC13 Gene

  • C5orf44

Summaries for TRAPPC13 Gene

GeneCards Summary for TRAPPC13 Gene

TRAPPC13 (Trafficking Protein Particle Complex 13) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAPPC13 Gene

Genomics for TRAPPC13 Gene

Genomic Location for TRAPPC13 Gene

Start:
65,624,716 bp from pter
End:
65,666,233 bp from pter
Size:
41,518 bases
Orientation:
Plus strand

Genomic View for TRAPPC13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAPPC13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAPPC13 Gene

No data available for Regulatory Elements for TRAPPC13 Gene

Proteins for TRAPPC13 Gene

  • Protein details for TRAPPC13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A5PLN9-TPC13_HUMAN
    Recommended name:
    Trafficking protein particle complex subunit 13
    Protein Accession:
    A5PLN9
    Secondary Accessions:
    • Q17RZ9
    • Q49A23
    • Q4JHG0
    • Q6MZG4
    • Q8TCM2
    • Q9H8I3

    Protein attributes for TRAPPC13 Gene

    Size:
    417 amino acids
    Molecular mass:
    46524 Da
    Quaternary structure:
    • Part of the multisubunit TRAPP (transport protein particle) complex.
    SequenceCaution:
    • Sequence=AAH47475.1; Type=Miscellaneous discrepancy; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; Sequence=BAB14633.1; Type=Erroneous termination; Positions=63; Note=Translated as Glu.; Evidence={ECO:0000305};

    Alternative splice isoforms for TRAPPC13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRAPPC13 Gene

Proteomics data for TRAPPC13 Gene at MOPED

Post-translational modifications for TRAPPC13 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys165 and Lys264

No data available for DME Specific Peptides for TRAPPC13 Gene

Domains for TRAPPC13 Gene

Protein Domains for TRAPPC13 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A5PLN9

UniProtKB/Swiss-Prot:

TPC13_HUMAN
Family:
  • Belongs to the TRAPPC13 family.:
    • A5PLN9
genes like me logo Genes that share domains with TRAPPC13: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for TRAPPC13 Gene

Function for TRAPPC13 Gene

Gene Ontology (GO) - Molecular Function for TRAPPC13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21453443
genes like me logo Genes that share ontologies with TRAPPC13: view

miRNA for TRAPPC13 Gene

miRTarBase miRNAs that target TRAPPC13

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TRAPPC13 Gene

Localization for TRAPPC13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAPPC13 Gene

Pathways for TRAPPC13 Gene

SuperPathways for TRAPPC13 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRAPPC13 Gene

None

No data available for Pathways by source for TRAPPC13 Gene

Transcripts for TRAPPC13 Gene

Unigene Clusters for TRAPPC13 Gene

Trafficking protein particle complex 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRAPPC13 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b · 11c ^ 12a · 12b ^ 13a · 13b · 13c · 13d ^ 14a · 14b ·
SP1: - - -
SP2: - - -
SP3: - - -
SP4: - - -
SP5: - - -
SP6: -
SP7: -
SP8:
SP9:
SP10:

ExUns: 14c · 14d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for TRAPPC13 Gene

GeneLoc Exon Structure for
TRAPPC13
ECgene alternative splicing isoforms for
TRAPPC13

Expression for TRAPPC13 Gene

mRNA expression in normal human tissues for TRAPPC13 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TRAPPC13 Gene

SOURCE GeneReport for Unigene cluster for TRAPPC13 Gene Hs.591760

genes like me logo Genes that share expressions with TRAPPC13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TRAPPC13 Gene

Orthologs for TRAPPC13 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TRAPPC13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C5ORF44 36
  • 99 (a)
OneToOne
TRAPPC13 35
  • 99.6 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia TRAPPC13 35
  • 93.76 (n)
  • 98.08 (a)
TRAPPC13 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRAPPC13 35
  • 93.54 (n)
  • 98.33 (a)
TRAPPC13 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trappc13 35
  • 89 (n)
  • 96.65 (a)
Trappc13 16
Trappc13 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TRAPPC13 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRAPPC13 36
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Trappc13 35
  • 89.31 (n)
  • 96.89 (a)
chicken
(Gallus gallus)
Aves CZH5ORF44 35
  • 82.78 (n)
  • 93.78 (a)
CZH5ORF44 36
  • 94 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TRAPPC13 36
  • 92 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.2220 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3852 35
trappc13 35
  • 77.18 (n)
  • 89.56 (a)
zebrafish
(Danio rerio)
Actinopterygii sbcb318 35
trappc13 35
  • 72.82 (n)
  • 87.53 (a)
trappc13 36
  • 87 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005561 35
  • 53.55 (n)
  • 52.88 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4953 35
  • 50.34 (n)
  • 48.21 (a)
CG4953 36
  • 42 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C56C10.7 35
  • 55.38 (n)
  • 49.87 (a)
C56C10.7 36
  • 42 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G47960 35
  • 47.81 (n)
  • 37.37 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU01664 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 51 (a)
OneToOne
Species with no ortholog for TRAPPC13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TRAPPC13 Gene

ENSEMBL:
Gene Tree for TRAPPC13 (if available)
TreeFam:
Gene Tree for TRAPPC13 (if available)

Paralogs for TRAPPC13 Gene

Selected SIMAP similar genes for TRAPPC13 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for TRAPPC13 Gene

genes like me logo Genes that share paralogs with TRAPPC13: view

No data available for Paralogs for TRAPPC13 Gene

Variants for TRAPPC13 Gene

Sequence variations from dbSNP and Humsavar for TRAPPC13 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs16737 -- 65,630,440(-) GGAAT(-/TCTAAA)AAGTC intron-variant, cds-indel
rs27143 -- 65,658,201(+) TGATA(A/G)GGTGA intron-variant
rs27144 -- 65,655,206(+) AAAGA(G/T)GATTC intron-variant
rs27147 -- 65,653,874(+) TTGTT(A/G)TTAAT intron-variant
rs27148 -- 65,652,784(+) CTTTC(A/G)TCTCC intron-variant

Relevant External Links for TRAPPC13 Gene

HapMap Linkage Disequilibrium report
TRAPPC13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TRAPPC13 Gene

Disorders for TRAPPC13 Gene

No disorders were found for TRAPPC13 Gene.

No data available for UniProtKB/Swiss-Prot for TRAPPC13 Gene

Publications for TRAPPC13 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Organization and assembly of the TRAPPII complex. (PMID: 21453443) Choi C. … Conibear E. (Traffic 2011) 3 4
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for TRAPPC13 Gene

Sources for TRAPPC13 Gene

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