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Aliases for TRAM2-AS1 Gene

Subcategory (RNA class) for TRAM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRAM2-AS1 Gene

  • TRAM2 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TRAM2-AS1 Gene

Previous GeneCards Identifiers for TRAM2-AS1 Gene

  • GC06P052445

Summaries for TRAM2-AS1 Gene

GeneCards Summary for TRAM2-AS1 Gene

TRAM2-AS1 (TRAM2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRAM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAM2-AS1 Gene

Genomics for TRAM2-AS1 Gene

Regulatory Elements for TRAM2-AS1 Gene

Enhancers for TRAM2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H052549 1.7 FANTOM5 Ensembl ENCODE dbSUPER 17.9 -25.3 -25263 4 FOXA2 NFIB INSM2 ARID4B KLF17 SIN3A BATF RAD21 YY1 ZSCAN5C TRAM2-AS1 TRAM2 EFHC1 PAQR8 GSTA5 GC06P052544
GH06H052535 1.6 Ensembl ENCODE dbSUPER 18 -34.8 -34800 13 PKNOX1 FOXA2 ATF1 MLX ARID4B YY1 SLC30A9 GLIS2 ATF7 RUNX3 EFHC1 TRAM2-AS1 TRAM2 MCM3 IL17F SLC25A20P1 PAQR8 LOC730101 GC06P052544 PIR31355
GH06H052563 2 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -6.0 -5984 14 HDGF FOXA2 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 MCM3 EFHC1 TRAM2-AS1 PAQR8 LOC730101 TRAM2 GC06P052544
GH06H052609 1.3 Ensembl ENCODE dbSUPER 11.6 +34.2 34170 3 PKNOX1 ATF1 KLF17 TCF12 ZNF766 ELK1 FOS RCOR1 ATF7 CREM TRAM2 TRAM2-AS1 EFHC1 LOC730101 PIR56752 LOC724104
GH06H052652 1.2 Ensembl ENCODE 10.9 +75.0 75000 0 PKNOX1 FOXA2 ARID4B YBX1 ZNF2 YY1 ZNF143 REST MIER2 KAT8 EFHC1 TRAM2 TRAM2-AS1 LOC730101 LOC724104 PIR56752
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRAM2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000197920 -402 2401 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 ZNF207

Genomic Location for TRAM2-AS1 Gene

Chromosome:
6
Start:
52,577,202 bp from pter
End:
52,583,993 bp from pter
Size:
6,792 bases
Orientation:
Plus strand

Genomic View for TRAM2-AS1 Gene

Genes around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAM2-AS1 Gene

Proteins for TRAM2-AS1 Gene

Post-translational modifications for TRAM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAM2-AS1 Gene

Domains & Families for TRAM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAM2-AS1 Gene

Function for TRAM2-AS1 Gene

Phenotypes From GWAS Catalog for TRAM2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAM2-AS1 Gene

Localization for TRAM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAM2-AS1 Gene

Pathways & Interactions for TRAM2-AS1 Gene

SuperPathways for TRAM2-AS1 Gene

No Data Available

Interacting Proteins for TRAM2-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAM2-AS1 Gene

Drugs & Compounds for TRAM2-AS1 Gene

No Compound Related Data Available

Transcripts for TRAM2-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAM2-AS1 Gene

No ASD Table

Relevant External Links for TRAM2-AS1 Gene

GeneLoc Exon Structure for
TRAM2-AS1
ECgene alternative splicing isoforms for
TRAM2-AS1

Expression for TRAM2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAM2-AS1 Gene

genes like me logo Genes that share expression patterns with TRAM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAM2-AS1 Gene

Orthologs for TRAM2-AS1 Gene

Evolution for TRAM2-AS1 Gene

ENSEMBL:
Gene Tree for TRAM2-AS1 (if available)
TreeFam:
Gene Tree for TRAM2-AS1 (if available)

No data available for Orthologs for TRAM2-AS1 Gene

Paralogs for TRAM2-AS1 Gene

No data available for Paralogs for TRAM2-AS1 Gene

Variants for TRAM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRAM2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000089045 -- 52,582,654(+) GAATG(A/C)CCACT intron-variant
rs1000120103 -- 52,582,321(+) TGTGT(G/T)TTTGT intron-variant
rs1000190350 -- 52,579,502(+) TGTGC(C/G)ACCTT nc-transcript-variant
rs1000221407 -- 52,579,860(+) GGGTG(C/T)AAGGG intron-variant
rs1000418600 -- 52,576,514(+) AGGCC(A/G)GGCTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TRAM2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830663 CNV loss 17160897

Relevant External Links for TRAM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRAM2-AS1 Gene

Disorders for TRAM2-AS1 Gene

Relevant External Links for TRAM2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRAM2-AS1

No disorders were found for TRAM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAM2-AS1 Gene

Publications for TRAM2-AS1 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2016) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for TRAM2-AS1 Gene

Sources for TRAM2-AS1 Gene

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