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Aliases for TRAM2-AS1 Gene

Subcategory (RNA class) for TRAM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRAM2-AS1 Gene

  • TRAM2 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TRAM2-AS1 Gene

Previous GeneCards Identifiers for TRAM2-AS1 Gene

  • GC06P052445

Summaries for TRAM2-AS1 Gene

GeneCards Summary for TRAM2-AS1 Gene

TRAM2-AS1 (TRAM2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRAM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAM2-AS1 Gene

Genomics for TRAM2-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRAM2-AS1 Gene

Promoters and enhancers for TRAM2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I052563 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 -6.0 -5983 14.5 HDGF FOXA2 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 TRAM2 EFHC1 MCM3 TRAM2-AS1 PAQR8 LOC730101 GC06P052544
GH06I052549 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 17.9 -25.3 -25262 5 FOXA2 NFIB INSM2 ARID4B KLF17 SIN3A BATF RAD21 YY1 ZSCAN5C TRAM2-AS1 TRAM2 EFHC1 PAQR8 GSTA5 GC06P052544
GH06I052535 Enhancer 1.4 Ensembl ENCODE dbSUPER 18 -34.8 -34799 13.3 PKNOX1 FOXA2 SMAD1 MLX ARID4B IRF4 YY1 SLC30A9 SP5 JUNB EFHC1 TRAM2-AS1 TRAM2 MCM3 IL17F SLC25A20P1 PAQR8 LOC730101 GC06P052544 PIR31355
GH06I052663 Promoter/Enhancer 1.5 Ensembl ENCODE 11.6 +87.2 87192 2.5 PKNOX1 ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 POLR2B E2F8 ZNF207 LOC730101 MCM3 EFHC1 TRAM2 TRAM2-AS1 ICK TMEM14A GC06P052657
GH06I052609 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.6 +34.2 34169 3.5 ATF1 PKNOX1 KLF17 ZBTB40 ZNF335 TCF12 ZNF766 RCOR1 FOS ATF7 TRAM2 TRAM2-AS1 EFHC1 LOC730101 PIR56752 LOC724104
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRAM2-AS1 Gene

Genomic Locations for TRAM2-AS1 Gene
chr6:52,577,202-52,583,993
(GRCh38/hg38)
Size:
6,792 bases
Orientation:
Plus strand
chr6:52,441,893-52,448,791
(GRCh37/hg19)

Genomic View for TRAM2-AS1 Gene

Genes around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAM2-AS1 Gene

Proteins for TRAM2-AS1 Gene

Post-translational modifications for TRAM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAM2-AS1 Gene

Domains & Families for TRAM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAM2-AS1 Gene

Function for TRAM2-AS1 Gene

Phenotypes From GWAS Catalog for TRAM2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAM2-AS1 Gene

Localization for TRAM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAM2-AS1 Gene

Pathways & Interactions for TRAM2-AS1 Gene

SuperPathways for TRAM2-AS1 Gene

No Data Available

Interacting Proteins for TRAM2-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAM2-AS1 Gene

Drugs & Compounds for TRAM2-AS1 Gene

No Compound Related Data Available

Transcripts for TRAM2-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAM2-AS1 Gene

No ASD Table

Relevant External Links for TRAM2-AS1 Gene

GeneLoc Exon Structure for
TRAM2-AS1
ECgene alternative splicing isoforms for
TRAM2-AS1

Expression for TRAM2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAM2-AS1 Gene

genes like me logo Genes that share expression patterns with TRAM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAM2-AS1 Gene

Orthologs for TRAM2-AS1 Gene

Evolution for TRAM2-AS1 Gene

ENSEMBL:
Gene Tree for TRAM2-AS1 (if available)
TreeFam:
Gene Tree for TRAM2-AS1 (if available)

No data available for Orthologs for TRAM2-AS1 Gene

Paralogs for TRAM2-AS1 Gene

No data available for Paralogs for TRAM2-AS1 Gene

Variants for TRAM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRAM2-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000089045 -- 52,582,654(+) A/C intron_variant
rs1000120103 -- 52,582,321(+) T/G intron_variant
rs1000190350 -- 52,579,502(+) C/G non_coding_transcript_variant
rs1000221407 -- 52,579,860(+) T/C intron_variant
rs1000418600 -- 52,576,514(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TRAM2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830663 CNV loss 17160897

Additional Variant Information for TRAM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRAM2-AS1 Gene

Disorders for TRAM2-AS1 Gene

Additional Disease Information for TRAM2-AS1

No disorders were found for TRAM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAM2-AS1 Gene

Publications for TRAM2-AS1 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for TRAM2-AS1 Gene

Sources for TRAM2-AS1 Gene

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