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Aliases for TRAM2-AS1 Gene

Subcategory (RNA class) for TRAM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRAM2-AS1 Gene

  • TRAM2 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TRAM2-AS1 Gene

Previous GeneCards Identifiers for TRAM2-AS1 Gene

  • GC06P052445

Summaries for TRAM2-AS1 Gene

GeneCards Summary for TRAM2-AS1 Gene

TRAM2-AS1 (TRAM2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAM2-AS1 Gene

Genomics for TRAM2-AS1 Gene

Regulatory Elements for TRAM2-AS1 Gene

Enhancers for TRAM2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F052535 1.2 Ensembl ENCODE 18 -34.8 -34800 13.3 MLX ARID4B SIN3A YY1 SLC30A9 ZNF263 PAF1 SP5 JUNB MXD4 TRAM2-AS1 TRAM2 EFHC1 IL17F SLC25A20P1 PAQR8 LOC730101 GC06P052544 PIR31355
GH06F052549 1.6 FANTOM5 Ensembl ENCODE 17.9 -25.3 -25263 5.0 ATF1 ARID4B SIN3A FEZF1 DMAP1 ZNF263 JUNB REST TSHZ1 TBX21 TRAM2-AS1 TRAM2 EFHC1 PAQR8 GSTA5 GC06P052544
GH06F052563 1.3 FANTOM5 Ensembl ENCODE 11.6 -6.0 -5984 14.5 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF207 TRAM2-AS1 EFHC1 MCM3 PAQR8 LOC730101 TRAM2 GC06P052544
GH06F052609 0.8 Ensembl ENCODE 11.6 +34.2 34206 3.6 PKNOX1 ATF1 TAL1 KLF17 ZNF175 ZBTB40 RAD21 GATA3 NCOR1 NR2F6 TRAM2 TRAM2-AS1 EFHC1 LOC730101 PIR56752 LOC724104
GH06F052663 1 ENCODE 11.6 +87.2 87193 2.5 PKNOX1 ARNT WRNIP1 ARID4B YBX1 DMAP1 ZNF2 YY1 ZNF143 FOS LOC730101 IL17F LOC724104 RPL31P28 TMEM14A GSTA4 EFHC1 TRAM2 TRAM2-AS1 ICK
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRAM2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001218511 -702 3401 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF207 ZNF143

Genomic Location for TRAM2-AS1 Gene

Chromosome:
6
Start:
52,577,202 bp from pter
End:
52,583,993 bp from pter
Size:
6,792 bases
Orientation:
Plus strand

Genomic View for TRAM2-AS1 Gene

Genes around TRAM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAM2-AS1 Gene

Proteins for TRAM2-AS1 Gene

Post-translational modifications for TRAM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAM2-AS1 Gene

Domains & Families for TRAM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAM2-AS1 Gene

Function for TRAM2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAM2-AS1 Gene

Localization for TRAM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAM2-AS1 Gene

Pathways & Interactions for TRAM2-AS1 Gene

SuperPathways for TRAM2-AS1 Gene

No Data Available

Interacting Proteins for TRAM2-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAM2-AS1 Gene

Transcripts for TRAM2-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAM2-AS1 Gene

No ASD Table

Relevant External Links for TRAM2-AS1 Gene

GeneLoc Exon Structure for
TRAM2-AS1
ECgene alternative splicing isoforms for
TRAM2-AS1

Expression for TRAM2-AS1 Gene

mRNA expression in normal human tissues for TRAM2-AS1 Gene

genes like me logo Genes that share expression patterns with TRAM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRAM2-AS1 Gene

Orthologs for TRAM2-AS1 Gene

Evolution for TRAM2-AS1 Gene

ENSEMBL:
Gene Tree for TRAM2-AS1 (if available)
TreeFam:
Gene Tree for TRAM2-AS1 (if available)

No data available for Orthologs for TRAM2-AS1 Gene

Paralogs for TRAM2-AS1 Gene

No data available for Paralogs for TRAM2-AS1 Gene

Variants for TRAM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRAM2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111383214 -- 52,576,279(+) AACAT(-/C)CGAGC intron-variant, upstream-variant-2KB
rs111934923 -- 52,578,935(+) TCTTG(A/G)CCTCC intron-variant, upstream-variant-2KB
rs112031752 -- 52,576,689(+) CGGCA(C/G)CCAGG intron-variant, upstream-variant-2KB
rs112192216 -- 52,580,679(+) CTGTT(C/G)CCCAG intron-variant
rs112667009 -- 52,580,565(+) CCTCC(C/T)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRAM2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830663 CNV loss 17160897

Relevant External Links for TRAM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRAM2-AS1 Gene

Disorders for TRAM2-AS1 Gene

Relevant External Links for TRAM2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRAM2-AS1

No disorders were found for TRAM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAM2-AS1 Gene

Publications for TRAM2-AS1 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu S.J. … Lim D.A. (Science 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TRAM2-AS1 Gene

Sources for TRAM2-AS1 Gene

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