TRAM2 Gene
protein-coding GIFtS: 52
GCID: GC06M052363
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|
translocation associated membrane protein 2
| |
Aliases
for TRAM2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Translocation Associated Membrane Protein 21 2 | | KIAA00571 3 | | TRAM-Like Protein2 | | Translocating Chain-Associated Membrane Protein 22 |
Export aliases for TRAM2 gene to outside databasesPrevious GC identifers: GC06M052358 GC06M052409 GC06M052414 GC06M052470 GC06U900790 GC06M052193 |
Summaries
for TRAM2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for TRAM2:
TRAM2 is a component of the translocon, a gated macromolecular channel that controls the posttranslational processingof nascent secretory and membrane proteins at the endoplasmic reticulum (ER) membrane.(supplied by OMIM, Jul 2004)
UniProtKB/Swiss-Prot: TRAM2_HUMAN, Q15035Function: Necessary for collagen type I synthesis. May couple the activity of the ER Ca(2+) pump SERCA2B with theactivity of the translocon. This coupling may increase the local Ca(2+) concentration at the site of collagensynthesis, and a high Ca(2+) concentration may be necessary for the function of molecular chaperones involved incollagen folding
Gene Wiki entry for TRAM2
|
Genomic Views
for TRAM2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000006.11 NC_018917.1 NT_007592.15
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the TRAM2 gene promoter:
Tal-1 NF-AT PPAR-gamma1 NF-AT4 GATA-6 NF-AT2 ARP-1 NF-AT3 PPAR-gamma2 NF-AT1
Other transcription factors
Search SABiosciences Chromatin IP Primers for TRAM2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRAM2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6p21.1-p12 Ensembl cytogenetic band: 6p12.2 HGNC cytogenetic band: 6p21.1-p12TRAM2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M052363: view genomic region
(about GC identifiers)
Start:
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52,362,200 bp from pter |
End:
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52,441,862 bp from pter |
Size:
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79,663 bases |
Orientation:
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minus strand |
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Proteins
for TRAM2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: TRAM2_HUMAN, Q15035 (See
protein sequence)Recommended Name: Translocating chain-associated membrane protein 2 Size: 370 amino acids; 43328 Da
Subunit: Interacts with SERCA2B and COL1A1
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Sequence caution: Sequence=BAA06540.2; Type=Erroneous initiation;
Secondary accessions: A8K6T6Explore the universe of human proteins at neXtProt for TRAM2: NX_Q15035
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q15035
TRAM2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_036420.1
ENSEMBL proteins: ENSP00000182527
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016021 | integral to membrane |
IEA | -- |
TRAM2 for ontologies About GeneDecksing
TRAM2 Antibody Products:
Assay Products for TRAM2: |
Protein
Domains /
Families
for TRAM2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
TRAM2 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q15035ProtoNet protein and cluster: Q15035 3 Blocks protein families: IPB005547 Longevity-assurance protein (LAG1) IPB006634 TRAM IPB013599 TRAM1-like protein
UniProtKB/Swiss-Prot: TRAM2_HUMAN, Q15035Similarity: Belongs to the TRAM familySimilarity: Contains 1 TLC (TRAM/LAG1/CLN8) domain |
Function
for TRAM2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: TRAM2_HUMAN, Q15035Function: Necessary for collagen type I synthesis. May couple the activity of the ER Ca(2+) pump SERCA2B with theactivity of the translocon. This coupling may increase the local Ca(2+) concentration at the site of collagensynthesis, and a high Ca(2+) concentration may be necessary for the function of molecular chaperones involved incollagen folding
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TRAM2 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TRAM2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: TRAM2 (NM_012288) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TRAM2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TRAM2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRAM2 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table
TRAM2 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for TRAM2:
|
Pathways & Interactions
for TRAM2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TRAM2
STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)
5/6 Interacting proteins for TRAM2 (Q150353 ENSP000001825274) via UniProtKB, MINT, STRING, and/or I2D (see all 6)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table
TRAM2 for ontologies About GeneDecksing
|
Drugs & Compounds
for TRAM2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for TRAM2
Search CenterWatch for drugs/clinical trials and news about TRAM2
|
Transcripts
for TRAM2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for TRAM2 gene: NM_012288.3 Unigene Cluster for TRAM2: Translocation associated membrane protein 2 Hs.520182 [show with all ESTs]Unigene Representative Sequence: NM_0122881 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000182527(uc003paq.3 uc003par.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TRAM2 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TRAM2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: TRAM2 (NM_012288) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TRAM2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TRAM2 |
Additional cDNA sequence: AB621814.1 AK291751.1 AK311560.1 AY927571.1 AY927606.1 AY927607.1 BC016804.1 BC028121.1 D31762.1 7 DOTS entries: DT.92445813 DT.40214424 DT.92445815 DT.101973563 DT.121368638 DT.75173504 DT.100667495
GeneLoc Exon Structure
|
Expression
for TRAM2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| TRAM2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TAAAAAAGGG
About this image
See TRAM2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TRAM2
SOURCE GeneReport for Unigene cluster: Hs.520182
SABiosciences Custom PCR Arrays for TRAM2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TRAM2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TRAM2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRAM2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRAM2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRAM2 |
Orthologs
for TRAM2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for TRAM2 gene from 5/18 species (see all 18) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
TRAM21 |
translocation associated membrane protein 2 |
77.88(n)
78.98(a) |
|
422040 XM_420046.3 XP_420046.3 |
lizard
(Anolis carolinensis) |
Reptilia |
---- |
-- |
82(a)74(a) |
1 ↔ many1 ↔ many |
1(122964260-122991461) 1(122954816-122962892) |
zebrafish
(Danio rerio) |
Actinopterygii |
Dr.48112 |
Danio rerio mRNA similar to TRAM-like protein (cDNA more |
73.16(n) |
|
BC046900.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
TRAM6 |
TRAM |
36(a) |
1 → many |
X(829265-831855) |
worm
(Caenorhabditis elegans) |
Secernentea |
tram-16 |
TRAM (TRanslocating chain-Associating Membrane) pr... |
35(a) |
1 → many |
IV(10219409-10221260) |
ENSEMBL Gene Tree for TRAM2 (if available)
TreeFam Gene Tree for TRAM2 (if available) |
Paralogs
for TRAM2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for TRAM2 gene
- TRAM12 TRAM1L12
2 SIMAP similar genes for TRAM2 using alignment to 2 protein entries: TRAM2_HUMAN (see all proteins):TRAM1 TRAM1L1
TRAM2 for paralogs About GeneDecksing
|
Genomic Variants
for TRAM2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 6 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for TRAM2 (52362200 - 52441862 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TRAM2: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TRAM2 |
|
Disorders
/ Diseases
for TRAM2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
TRAM2 for disorders About GeneDecksing
OMIM gene information: 608485
OMIM disorders: --
5  diseases for TRAM2: About MalaCardsjuvenile myoclonic epilepsy polycystic kidney and hepatic disease polycystic kidney disease kidney disease
hepatitis
Human Genome Epidemiology (HuGE) Navigator: TRAM2 (2 documents)
Export disorders for TRAM2 gene to outside databases
|
Publications
for TRAM2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for TRAM2 gene, integrated from 9 sources (see all 18):
(articles sorted by number of sources associating them with TRAM2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7584044)1, 2, 3 Nomura N....Tabata S. (1994)
- TRAM2 protein interacts with endoplasmic reticulum Ca2+ pump Serca2b and is necessary for collagen type I synthesis. (PubMed id 14749390)1, 2, 9 Stefanovic B....Brenner D.A. (2004)
- Genomic organization of the KIAA0057 gene that encodes a TRAM-like protein and its exclusion as a polycystic kidney and hepatic disease 1 (PKHD1) candidate gene. (PubMed id 10594243)1, 3, 9 Onuchic L.F....Guay-Woodford L.M. (1999)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
- Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PubMed id 21697133)1 Oshikawa M.... Kato S. (2011)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
- Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061)1 Trynka G....Wijmenga C. (2009)
|
External Searches for TRAM2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing TRAM2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing TRAM2 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing TRAM2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for TRAM2 gene:
Search GeneIP for patents involving TRAM2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for TRAM2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | OriGene Antibodies for TRAM2 | | OriGene shRNA RFP for TRAM2 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TRAM2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TRAM2 | | | OriGene Protein Over-expression Lysate for TRAM2 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for TRAM2 | | OriGene 3'-UTR Clone for TRAM2 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TRAM2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TRAM2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for TRAM2 | | OriGene Custom Protein Services for TRAM2 | | | OriGene Custom Immunoassay Development | | |
| |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TRAM2 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TRAM2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRAM2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TRAM2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRAM2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRAM2 |
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| |  |  |  |  | | | | |
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 | | | TRAM2 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRAM2 |
|  |  |  | | | | ThermoFisher Antibodies for TRAM2 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TRAM2 |
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