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Aliases for TRAJ55 Gene

Aliases for TRAJ55 Gene

  • T Cell Receptor Alpha Joining 55 (Pseudogene) 2 3
  • T-Cell Receptor Alpha Joining 55 (Pseudogene) 5

External Ids for TRAJ55 Gene

Previous GeneCards Identifiers for TRAJ55 Gene

  • GC14U990336
  • GC14P020942
  • GC14P020972
  • GC14P022021
  • GC14P022950
  • GC14P022486
  • GC14P023959

Summaries for TRAJ55 Gene

Entrez Gene Summary for TRAJ55 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAJ55 Gene

TRAJ55 (T Cell Receptor Alpha Joining 55 (Pseudogene)) is a Pseudogene.

Additional gene information for TRAJ55 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAJ55 Gene

Genomics for TRAJ55 Gene

GeneHancer (GH) Regulatory Elements for TRAJ55 Gene

Promoters and enhancers for TRAJ55 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I022472 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.9 6851 32 HDGF PKNOX1 SMAD1 YBX1 IRF4 TCF12 ZNF207 ZNF143 ATF7 RUNX3 GC14P024192 GC14P024203 TRAJ48 TRAJ49 TRAJ50 TRAJ51 PRMT5-AS1 ABHD4 MMP14 MRPL52
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRAJ55 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRAJ55 Gene

Genomic Locations for TRAJ55 Gene
chr14:22,481,697-22,481,753
(GRCh38/hg38)
Size:
57 bases
Orientation:
Plus strand
chr14:22,950,686-22,950,742
(GRCh37/hg19)

Genomic View for TRAJ55 Gene

Genes around TRAJ55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAJ55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAJ55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAJ55 Gene

Proteins for TRAJ55 Gene

Post-translational modifications for TRAJ55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAJ55 Gene

Domains & Families for TRAJ55 Gene

Gene Families for TRAJ55 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAJ55: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAJ55 Gene

Function for TRAJ55 Gene

Phenotypes From GWAS Catalog for TRAJ55 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAJ55 Gene

Localization for TRAJ55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAJ55 Gene

Pathways & Interactions for TRAJ55 Gene

SuperPathways for TRAJ55 Gene

No Data Available

Interacting Proteins for TRAJ55 Gene

Gene Ontology (GO) - Biological Process for TRAJ55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAJ55 Gene

Drugs & Compounds for TRAJ55 Gene

No Compound Related Data Available

Transcripts for TRAJ55 Gene

mRNA/cDNA for TRAJ55 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRAJ55 Gene

No ASD Table

Relevant External Links for TRAJ55 Gene

GeneLoc Exon Structure for
TRAJ55
ECgene alternative splicing isoforms for
TRAJ55

Expression for TRAJ55 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRAJ55 Gene:

TRAJ55
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAJ55 Gene

Orthologs for TRAJ55 Gene

Evolution for TRAJ55 Gene

ENSEMBL:
Gene Tree for TRAJ55 (if available)
TreeFam:
Gene Tree for TRAJ55 (if available)

No data available for Orthologs for TRAJ55 Gene

Paralogs for TRAJ55 Gene

No data available for Paralogs for TRAJ55 Gene

Variants for TRAJ55 Gene

Additional Variant Information for TRAJ55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAJ55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAJ55 Gene

Disorders for TRAJ55 Gene

No disorders were found for TRAJ55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAJ55 Gene

Publications for TRAJ55 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop BF … Hood L (Genomics 1994) 2 3 58

Products for TRAJ55 Gene

Sources for TRAJ55 Gene

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