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Aliases for TRAJ5 Gene

Aliases for TRAJ5 Gene

  • T Cell Receptor Alpha Joining 5 2 3 5

External Ids for TRAJ5 Gene

Previous GeneCards Identifiers for TRAJ5 Gene

  • GC14U990386
  • GC14P020999
  • GC14P022080
  • GC14P023064
  • GC14P023128
  • GC14P023190
  • GC14P023241
  • GC14P023303
  • GC14P023381
  • GC14P023453
  • GC14P023536
  • GC14P023627
  • GC14P023772
  • GC14P022560
  • GC14P022663
  • GC14P022748
  • GC14P022813

Summaries for TRAJ5 Gene

Entrez Gene Summary for TRAJ5 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAJ5 Gene

TRAJ5 (T Cell Receptor Alpha Joining 5) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAJ5 Gene

Genomics for TRAJ5 Gene

Genomic Location for TRAJ5 Gene

22,540,247 bp from pter
22,540,306 bp from pter
60 bases
Plus strand

Genomic View for TRAJ5 Gene

Genes around TRAJ5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAJ5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAJ5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAJ5 Gene

No data available for Regulatory Elements for TRAJ5 Gene

Proteins for TRAJ5 Gene

  • Protein details for TRAJ5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein TRAJ5
    Protein Accession:

    Protein attributes for TRAJ5 Gene

    20 amino acids
    Molecular mass:
    2172 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAJ5 Gene

Post-translational modifications for TRAJ5 Gene

No Post-translational modifications

Other Protein References for TRAJ5 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAJ5 Gene

Domains & Families for TRAJ5 Gene

Gene Families for TRAJ5 Gene

Protein Domains for TRAJ5 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAJ5: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAJ5 Gene

Function for TRAJ5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAJ5 Gene

Localization for TRAJ5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAJ5 Gene

Pathways & Interactions for TRAJ5 Gene

SuperPathways for TRAJ5 Gene

No Data Available

Interacting Proteins for TRAJ5 Gene

Gene Ontology (GO) - Biological Process for TRAJ5 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRAJ5 Gene

Transcripts for TRAJ5 Gene

mRNA/cDNA for TRAJ5 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAJ5 Gene

No ASD Table

Relevant External Links for TRAJ5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRAJ5 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRAJ5 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRAJ5 Gene

Orthologs for TRAJ5 Gene

Evolution for TRAJ5 Gene

Gene Tree for TRAJ5 (if available)
Gene Tree for TRAJ5 (if available)

No data available for Orthologs for TRAJ5 Gene

Paralogs for TRAJ5 Gene

No data available for Paralogs for TRAJ5 Gene

Variants for TRAJ5 Gene

Relevant External Links for TRAJ5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAJ5 Gene

Disorders for TRAJ5 Gene

No disorders were found for TRAJ5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAJ5 Gene

Publications for TRAJ5 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3 64

Products for TRAJ5 Gene

Sources for TRAJ5 Gene

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