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Aliases for TRAJ49 Gene

Aliases for TRAJ49 Gene

  • T Cell Receptor Alpha Joining 49 2 3 5

External Ids for TRAJ49 Gene

Previous GeneCards Identifiers for TRAJ49 Gene

  • GC14U990342
  • GC14P020948
  • GC14P022028
  • GC14P023017
  • GC14P023082
  • GC14P023143
  • GC14P023196
  • GC14P023257
  • GC14P023320
  • GC14P023397
  • GC14P023487
  • GC14P023578
  • GC14P023719
  • GC14P022492
  • GC14P022568
  • GC14P022755
  • GC14P022840

Summaries for TRAJ49 Gene

Entrez Gene Summary for TRAJ49 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAJ49 Gene

TRAJ49 (T Cell Receptor Alpha Joining 49) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAJ49 Gene

Genomics for TRAJ49 Gene

Regulatory Elements for TRAJ49 Gene


Promoters for TRAJ49 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001787807 1812 1001 HDAC1 TBP TBL1XR1 WRNIP1 BMI1 GATA2 CREM HMG20B JUNB TBX21

Genomic Location for TRAJ49 Gene

Chromosome:
14
Start:
22,489,488 bp from pter
End:
22,489,543 bp from pter
Size:
56 bases
Orientation:
Plus strand

Genomic View for TRAJ49 Gene

Genes around TRAJ49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAJ49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAJ49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAJ49 Gene

Proteins for TRAJ49 Gene

  • Protein details for TRAJ49 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B6Y0
    Recommended name:
    Protein TRAJ49
    Protein Accession:
    A0A075B6Y0

    Protein attributes for TRAJ49 Gene

    Size:
    19 amino acids
    Molecular mass:
    2028 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAJ49 Gene

Post-translational modifications for TRAJ49 Gene

No Post-translational modifications

Other Protein References for TRAJ49 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAJ49 Gene

Domains & Families for TRAJ49 Gene

Gene Families for TRAJ49 Gene

Protein Domains for TRAJ49 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAJ49: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAJ49 Gene

Function for TRAJ49 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAJ49 Gene

Localization for TRAJ49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAJ49 Gene

Pathways & Interactions for TRAJ49 Gene

SuperPathways for TRAJ49 Gene

No Data Available

Interacting Proteins for TRAJ49 Gene

Gene Ontology (GO) - Biological Process for TRAJ49 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAJ49 Gene

Transcripts for TRAJ49 Gene

mRNA/cDNA for TRAJ49 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAJ49 Gene

No ASD Table

Relevant External Links for TRAJ49 Gene

GeneLoc Exon Structure for
TRAJ49
ECgene alternative splicing isoforms for
TRAJ49

Expression for TRAJ49 Gene

mRNA expression in normal human tissues for TRAJ49 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRAJ49 Gene:

TRAJ49
genes like me logo Genes that share expression patterns with TRAJ49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRAJ49 Gene

Orthologs for TRAJ49 Gene

Evolution for TRAJ49 Gene

ENSEMBL:
Gene Tree for TRAJ49 (if available)
TreeFam:
Gene Tree for TRAJ49 (if available)

No data available for Orthologs for TRAJ49 Gene

Paralogs for TRAJ49 Gene

No data available for Paralogs for TRAJ49 Gene

Variants for TRAJ49 Gene

Relevant External Links for TRAJ49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAJ49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAJ49 Gene

Disorders for TRAJ49 Gene

No disorders were found for TRAJ49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAJ49 Gene

Publications for TRAJ49 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3 64

Products for TRAJ49 Gene

Sources for TRAJ49 Gene

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