Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRAF6P1 Gene

Subcategory (RNA class) for TRAF6P1 Gene

lncRNA

Aliases for TRAF6P1 Gene

  • TNF Receptor Associated Factor 6 Pseudogene 1 2 3 5

External Ids for TRAF6P1 Gene

ORGUL Members for TRAF6P1 Gene

Previous GeneCards Identifiers for TRAF6P1 Gene

  • GC10M060899

Summaries for TRAF6P1 Gene

GeneCards Summary for TRAF6P1 Gene

TRAF6P1 (TNF Receptor Associated Factor 6 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAF6P1 Gene

Genomics for TRAF6P1 Gene

Regulatory Elements for TRAF6P1 Gene

Enhancers for TRAF6P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G059134 0.5 ENCODE 0.7 +3.3 3314 0.4 RFX1 RFX3 FOXJ2 BMI1 EP300 PHYHIPL TRAF6P1 RPLP1P10
GH10G059108 0.7 ENCODE 0.3 +29.1 29056 1.1 SOX13 HNRNPUL1 PKNOX1 TEAD1 HLF MAFG EBF1 HNF1A CEBPA TCF7 PHYHIPL RPLP1P10 TRAF6P1
GH10G059127 0.5 ENCODE 0.4 +11.0 11017 0.1 SOX5 SOX13 CEBPA HLF CEBPG PHYHIPL TRAF6P1 RPLP1P10
GH10G059125 0.5 ENCODE 0.4 +12.1 12089 1.3 BHLHE40 IKZF1 SPI1 PHYHIPL TRAF6P1 RPLP1P10
GH10G059098 0.6 ENCODE 0.3 +38.5 38529 2.6 NFIC POLR2A NFIA SMARCA4 NFIB RAD21 RPLP1P10 TRAF6P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRAF6P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRAF6P1 Gene

Chromosome:
10
Start:
59,136,625 bp from pter
End:
59,138,182 bp from pter
Size:
1,558 bases
Orientation:
Minus strand

Genomic View for TRAF6P1 Gene

Genes around TRAF6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAF6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAF6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAF6P1 Gene

Proteins for TRAF6P1 Gene

Post-translational modifications for TRAF6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAF6P1 Gene

Domains & Families for TRAF6P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAF6P1 Gene

Function for TRAF6P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAF6P1 Gene

Localization for TRAF6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAF6P1 Gene

Pathways & Interactions for TRAF6P1 Gene

SuperPathways for TRAF6P1 Gene

No Data Available

Interacting Proteins for TRAF6P1 Gene

Gene Ontology (GO) - Biological Process for TRAF6P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAF6P1 Gene

Drugs & Compounds for TRAF6P1 Gene

No Compound Related Data Available

Transcripts for TRAF6P1 Gene

mRNA/cDNA for TRAF6P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAF6P1 Gene

No ASD Table

Relevant External Links for TRAF6P1 Gene

GeneLoc Exon Structure for
TRAF6P1
ECgene alternative splicing isoforms for
TRAF6P1

Expression for TRAF6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAF6P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRAF6P1 Gene:

TRAF6P1
genes like me logo Genes that share expression patterns with TRAF6P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAF6P1 Gene

Orthologs for TRAF6P1 Gene

Evolution for TRAF6P1 Gene

ENSEMBL:
Gene Tree for TRAF6P1 (if available)
TreeFam:
Gene Tree for TRAF6P1 (if available)

No data available for Orthologs for TRAF6P1 Gene

Paralogs for TRAF6P1 Gene

No data available for Paralogs for TRAF6P1 Gene

Variants for TRAF6P1 Gene

Relevant External Links for TRAF6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAF6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAF6P1 Gene

Disorders for TRAF6P1 Gene

No disorders were found for TRAF6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAF6P1 Gene

Publications for TRAF6P1 Gene

No publications were found for TRAF6P1 Gene.

Products for TRAF6P1 Gene

Sources for TRAF6P1 Gene

Content
Loading form....