Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRAF3IP2-AS1 Gene

Subcategory (RNA class) for TRAF3IP2-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TRAF3IP2-AS1 Gene

  • TRAF3IP2 Antisense RNA 1 2 3
  • TRAF3IP2 Antisense RNA 2 (Non-Protein Coding) 2 3
  • TRAF3IP2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 6 Open Reading Frame 3 2
  • Non-Protein Coding RNA 248 2
  • TRAF3IP2-AS2 3
  • NCRNA00248 3
  • C6orf3 3
  • C6UAS 3

External Ids for TRAF3IP2-AS1 Gene

ORGUL Members for TRAF3IP2-AS1 Gene

Previous HGNC Symbols for TRAF3IP2-AS1 Gene

  • TRAF3IP2-AS2
  • C6orf3
  • NCRNA00248

Previous GeneCards Identifiers for TRAF3IP2-AS1 Gene

  • GC06P111807
  • GC06P111808

Summaries for TRAF3IP2-AS1 Gene

GeneCards Summary for TRAF3IP2-AS1 Gene

TRAF3IP2-AS1 (TRAF3IP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for TRAF3IP2-AS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRAF3IP2-AS1 Gene

Genomics for TRAF3IP2-AS1 Gene

Genomic Location for TRAF3IP2-AS1 Gene

Start:
111,483,472 bp from pter
End:
111,602,295 bp from pter
Size:
118,824 bases
Orientation:
Plus strand

Genomic View for TRAF3IP2-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAF3IP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAF3IP2-AS1 Gene

No data available for Regulatory Elements for TRAF3IP2-AS1 Gene

Proteins for TRAF3IP2-AS1 Gene

Post-translational modifications for TRAF3IP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAF3IP2-AS1 Gene

Domains for TRAF3IP2-AS1 Gene

Gene Families for TRAF3IP2-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAF3IP2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAF3IP2-AS1 Gene

Function for TRAF3IP2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRAF3IP2-AS1 Gene

Localization for TRAF3IP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAF3IP2-AS1 Gene

Pathways for TRAF3IP2-AS1 Gene

SuperPathways for TRAF3IP2-AS1 Gene

No Data Available

Interacting Proteins for TRAF3IP2-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAF3IP2-AS1 Gene

None

No data available for Pathways by source for TRAF3IP2-AS1 Gene

Transcripts for TRAF3IP2-AS1 Gene

mRNA/cDNA for TRAF3IP2-AS1 Gene

(8) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRAF3IP2-AS1 Gene

TRAF3IP2 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TRAF3IP2-AS1
    • Block miRNA regulation of TRAF3IP2-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for TRAF3IP2-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for TRAF3IP2-AS1 Gene

    No ASD Table

    Relevant External Links for TRAF3IP2-AS1 Gene

    GeneLoc Exon Structure for
    TRAF3IP2-AS1
    ECgene alternative splicing isoforms for
    TRAF3IP2-AS1

    Expression for TRAF3IP2-AS1 Gene

    mRNA expression in normal human tissues for TRAF3IP2-AS1 Gene

    SOURCE GeneReport for Unigene cluster for TRAF3IP2-AS1 Gene Hs.486228

    genes like me logo Genes that share expressions with TRAF3IP2-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for TRAF3IP2-AS1 Gene

    Orthologs for TRAF3IP2-AS1 Gene

    Evolution for TRAF3IP2-AS1 Gene

    ENSEMBL:
    Gene Tree for TRAF3IP2-AS1 (if available)
    TreeFam:
    Gene Tree for TRAF3IP2-AS1 (if available)

    No data available for Orthologs for TRAF3IP2-AS1 Gene

    Paralogs for TRAF3IP2-AS1 Gene

    No data available for Paralogs for TRAF3IP2-AS1 Gene

    Variants for TRAF3IP2-AS1 Gene

    Sequence variations from dbSNP and Humsavar for TRAF3IP2-AS1 Gene

    SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
    rs1923751 -- 111,489,275(+) ataag(A/C)caaac intron-variant
    rs2025268 -- 111,486,137(+) CACCA(C/T)GCCTG intron-variant
    rs2025269 -- 111,489,237(+) TATGA(A/G)GTGCG intron-variant
    rs2146459 -- 111,494,760(+) GACTA(C/T)GGGCT intron-variant
    rs2181356 -- 111,494,401(+) AATAA(A/G)CTGTA intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for TRAF3IP2-AS1 Gene

    Variant ID Type Subtype PubMed ID
    esv2732577 CNV Deletion 23290073
    esv2732578 CNV Deletion 23290073

    Relevant External Links for TRAF3IP2-AS1 Gene

    HapMap Linkage Disequilibrium report
    TRAF3IP2-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRAF3IP2-AS1 Gene

    Disorders for TRAF3IP2-AS1 Gene

    No disorders were found for TRAF3IP2-AS1 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for TRAF3IP2-AS1 Gene

    Publications for TRAF3IP2-AS1 Gene

    1. Cloning and characterization of two overlapping genes in a subregion at 6q21 involved in replicative senescence and schizophrenia. (PMID: 10903453) Morelli C. … Barbanti-Brodano G. (Gene 2000) 3
    2. Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis. (PMID: 20953186) Huffmeier U. … Reis A. (Nat. Genet. 2010) 3
    3. Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2. (PMID: 20953188) Ellinghaus E. … Franke A. (Nat. Genet. 2010) 3
    4. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L. … Cho J.H. (Nature 2012) 3

    Products for TRAF3IP2-AS1 Gene

    Sources for TRAF3IP2-AS1 Gene

    Back to Top

    Content