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Aliases for TRAF3IP2-AS1 Gene

Subcategory (RNA class) for TRAF3IP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRAF3IP2-AS1 Gene

  • TRAF3IP2 Antisense RNA 1 2 3 5
  • TRAF3IP2 Antisense RNA 2 (Non-Protein Coding) 2 3
  • TRAF3IP2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 6 Open Reading Frame 3 2
  • Non-Protein Coding RNA 248 2
  • TRAF3IP2-AS2 3
  • NCRNA00248 3
  • C6orf3 3
  • C6UAS 3

External Ids for TRAF3IP2-AS1 Gene

Previous HGNC Symbols for TRAF3IP2-AS1 Gene

  • TRAF3IP2-AS2
  • C6orf3
  • NCRNA00248

Previous GeneCards Identifiers for TRAF3IP2-AS1 Gene

  • GC06P111807
  • GC06P111808

Summaries for TRAF3IP2-AS1 Gene

GeneCards Summary for TRAF3IP2-AS1 Gene

TRAF3IP2-AS1 (TRAF3IP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAF3IP2-AS1 Gene

Genomics for TRAF3IP2-AS1 Gene

Regulatory Elements for TRAF3IP2-AS1 Gene

Enhancers for TRAF3IP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F111549 2.2 VISTA FANTOM5 Ensembl ENCODE 11.5 +69.6 69645 6.6 HDGF PKNOX1 ARID4B SIN3A FEZF1 YBX1 ZNF2 ZNF143 FOS ZNF263 ENSG00000255389 REV3L TRAF3IP2 TRAF3IP2-AS1 MFSD4B GC06M111521 GC06M111495
GH06F111563 1.6 FANTOM5 Ensembl ENCODE 12.5 +82.9 82913 6.3 PKNOX1 ZNF133 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF416 FOS KLF7 MFSD4B ENSG00000220506 ENSG00000255389 TRAF3IP2 REV3L BRD7P4 FCF1P5 ENSG00000231046 FEM1AP3 TRAF3IP2-AS1
GH06F111405 1.5 FANTOM5 Ensembl ENCODE 11.2 -76.7 -76742 2.0 HDGF TBP PKNOX1 WRNIP1 BMI1 RAD21 RARA CBX5 ETV6 CREM REV3L TRAF3IP2-AS1 ENSG00000230177 SLC16A10 ENSG00000255389 TRAF3IP2 MFSD4B BRD7P4 REV3L-IT1
GH06F112026 1.4 FANTOM5 Ensembl ENCODE 11.1 +545.0 545006 3.4 PKNOX1 CBX3 NFRKB ZNF2 RAD21 YY1 ZNF143 MIXL1 ZNF654 YY2 FYN TRAF3IP2-AS1 WISP3 GC06M111982
GH06F110553 1.5 FANTOM5 ENCODE 9.8 -928.9 -928864 2.5 HDGF PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 MFSD4B FCF1P5 RN7SL617P ENSG00000231046 ENSG00000220506 WASF1 RPF2 BRD7P4 TRAF3IP2-AS1 CDK19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRAF3IP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRAF3IP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001224508 -771 5000 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 TBX21 MEF2D

Genomic Location for TRAF3IP2-AS1 Gene

Chromosome:
6
Start:
111,483,472 bp from pter
End:
111,602,295 bp from pter
Size:
118,824 bases
Orientation:
Plus strand

Genomic View for TRAF3IP2-AS1 Gene

Genes around TRAF3IP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAF3IP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAF3IP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAF3IP2-AS1 Gene

Proteins for TRAF3IP2-AS1 Gene

Post-translational modifications for TRAF3IP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAF3IP2-AS1 Gene

Domains & Families for TRAF3IP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAF3IP2-AS1 Gene

Function for TRAF3IP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAF3IP2-AS1 Gene

Localization for TRAF3IP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAF3IP2-AS1 Gene

Pathways & Interactions for TRAF3IP2-AS1 Gene

SuperPathways for TRAF3IP2-AS1 Gene

No Data Available

Interacting Proteins for TRAF3IP2-AS1 Gene

Gene Ontology (GO) - Biological Process for TRAF3IP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAF3IP2-AS1 Gene

Transcripts for TRAF3IP2-AS1 Gene

mRNA/cDNA for TRAF3IP2-AS1 Gene

(8) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRAF3IP2-AS1 Gene

TRAF3IP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRAF3IP2-AS1 Gene

No ASD Table

Relevant External Links for TRAF3IP2-AS1 Gene

GeneLoc Exon Structure for
TRAF3IP2-AS1
ECgene alternative splicing isoforms for
TRAF3IP2-AS1

Expression for TRAF3IP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRAF3IP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for TRAF3IP2-AS1 Gene:

Hs.486228
genes like me logo Genes that share expression patterns with TRAF3IP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRAF3IP2-AS1 Gene

Orthologs for TRAF3IP2-AS1 Gene

Evolution for TRAF3IP2-AS1 Gene

ENSEMBL:
Gene Tree for TRAF3IP2-AS1 (if available)
TreeFam:
Gene Tree for TRAF3IP2-AS1 (if available)

No data available for Orthologs for TRAF3IP2-AS1 Gene

Paralogs for TRAF3IP2-AS1 Gene

No data available for Paralogs for TRAF3IP2-AS1 Gene

Variants for TRAF3IP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRAF3IP2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs397518485 Pathogenic 111,559,523(-) GAACA(C/T)TCATG intron-variant, reference, missense
rs33980500 other 111,592,059(+) TTCAT(C/T)AACCT intron-variant, reference, missense
rs1040382 -- 111,580,876(+) CACAC(C/G)CCACT intron-variant
rs1040383 -- 111,580,985(+) TGCTA(C/G)AGCCT intron-variant
rs1043730 -- 111,580,250(-) GACCA(A/C)GAAGA intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TRAF3IP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2732577 CNV deletion 23290073
esv2732578 CNV deletion 23290073
nsv950494 CNV duplication 24416366

Relevant External Links for TRAF3IP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAF3IP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRAF3IP2-AS1 Gene

Disorders for TRAF3IP2-AS1 Gene

Relevant External Links for TRAF3IP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRAF3IP2-AS1

No disorders were found for TRAF3IP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAF3IP2-AS1 Gene

Publications for TRAF3IP2-AS1 Gene

  1. Genetics of long-term treatment outcome in bipolar disorder. (PMID: 26297903) Fabbri C. … Serretti A. (Prog. Neuropsychopharmacol. Biol. Psychiatry 2016) 3 64
  2. Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers. (PMID: 26222413) Bannon M.J. … Kapatos G. (J. Neurochem. 2015) 3 64
  3. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L. … Cho J.H. (Nature 2012) 3 64
  4. Common variants at TRAF3IP2 are associated with susceptibility to psoriatic arthritis and psoriasis. (PMID: 20953186) Huffmeier U. … Reis A. (Nat. Genet. 2010) 3 64
  5. Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2. (PMID: 20953188) Ellinghaus E. … Franke A. (Nat. Genet. 2010) 3 64

Products for TRAF3IP2-AS1 Gene

Sources for TRAF3IP2-AS1 Gene

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