Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRABD Gene

Aliases for TRABD Gene

  • TraB Domain Containing 2 3
  • TraB Domain-Containing Protein 3
  • Protein TTG2 4
  • TRABD2A 6
  • LP6054 3
  • PP2447 3
  • TIKI1 6
  • TTG2 4

External Ids for TRABD Gene

Previous GeneCards Identifiers for TRABD Gene

  • GC22P048966
  • GC22P050624
  • GC22P033529

Summaries for TRABD Gene

GeneCards Summary for TRABD Gene

TRABD (TraB Domain Containing) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRABD Gene

Genomics for TRABD Gene

Regulatory Elements for TRABD Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TRABD Gene

Start:
50,185,915 bp from pter
End:
50,199,598 bp from pter
Size:
13,684 bases
Orientation:
Plus strand

Genomic View for TRABD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRABD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRABD Gene

Proteins for TRABD Gene

  • Protein details for TRABD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4I3-TRABD_HUMAN
    Recommended name:
    TraB domain-containing protein
    Protein Accession:
    Q9H4I3
    Secondary Accessions:
    • Q19CC5
    • Q96ED8
    • Q9H7N1
    • Q9UGX6
    • Q9UGX7

    Protein attributes for TRABD Gene

    Size:
    376 amino acids
    Molecular mass:
    42321 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15737.1; Type=Frameshift; Positions=224, 282; Evidence={ECO:0000305};

    Alternative splice isoforms for TRABD Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRABD Gene

Proteomics data for TRABD Gene at MOPED

Post-translational modifications for TRABD Gene

  • Ubiquitination at Lys50, Lys116, and Lys209
  • Modification sites at PhosphoSitePlus

Other Protein References for TRABD Gene

No data available for DME Specific Peptides for TRABD Gene

Domains for TRABD Gene

Protein Domains for TRABD Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TRABD Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRABD: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TRABD Gene

Function for TRABD Gene

Animal Model Products

CRISPR Products

miRNA for TRABD Gene

miRTarBase miRNAs that target TRABD

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TRABD Gene

Localization for TRABD Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRABD Gene COMPARTMENTS Subcellular localization image for TRABD gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TRABD Gene

Pathways for TRABD Gene

SuperPathways for TRABD Gene

No Data Available

Interacting Proteins for TRABD Gene

Gene Ontology (GO) - Biological Process for TRABD Gene

None

No data available for Pathways by source for TRABD Gene

Transcripts for TRABD Gene

Unigene Clusters for TRABD Gene

TraB domain containing:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRABD

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TRABD

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRABD Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ·
SP1: - - - -
SP2: - - - - - - -
SP3: - - - -
SP4: - - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - -
SP8: - - -
SP9: - -
SP10: - - - -
SP11: -
SP12: -
SP13: -
SP14:

ExUns: 11c · 11d · 11e ^ 12a · 12b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11: - - -
SP12:
SP13:
SP14:

Relevant External Links for TRABD Gene

GeneLoc Exon Structure for
TRABD
ECgene alternative splicing isoforms for
TRABD

Expression for TRABD Gene

mRNA expression in normal human tissues for TRABD Gene

mRNA differential expression in normal tissues according to GTEx for TRABD Gene

This gene is overexpressed in Whole Blood (6.0).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for TRABD Gene

SOURCE GeneReport for Unigene cluster for TRABD Gene Hs.517731

genes like me logo Genes that share expressions with TRABD: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TRABD Gene

Orthologs for TRABD Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TRABD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRABD 35
  • 94.29 (n)
  • 94.29 (a)
TRABD 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TRABD 35
  • 88.21 (n)
  • 90.33 (a)
TRABD 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRABD 35
  • 90.79 (n)
  • 93.39 (a)
TRABD 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trabd 35
  • 86.33 (n)
  • 93.83 (a)
Trabd 16
Trabd 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TRABD 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRABD 36
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Trabd 35
  • 86.86 (n)
  • 93.57 (a)
chicken
(Gallus gallus)
Aves TRABD 35
  • 68.55 (n)
  • 75.47 (a)
TRABD 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TRABD 36
  • 65 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.32087 35
tropical clawed frog
(Silurana tropicalis)
Amphibia trabd 35
  • 67.4 (n)
  • 75.69 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.26717 35
trabd 35
  • 68.07 (n)
  • 70.48 (a)
trabd 36
  • 66 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004340 35
  • 57.99 (n)
  • 48.26 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG12360 35
  • 56.92 (n)
  • 49.65 (a)
CG12360 36
  • 29 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F38A5.2 36
  • 32 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G05270 35
  • 46.84 (n)
  • 40.08 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8533 36
  • 40 (a)
OneToOne
Species with no ortholog for TRABD:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TRABD Gene

ENSEMBL:
Gene Tree for TRABD (if available)
TreeFam:
Gene Tree for TRABD (if available)

Paralogs for TRABD Gene

No data available for Paralogs for TRABD Gene

Variants for TRABD Gene

Sequence variations from dbSNP and Humsavar for TRABD Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs730559 -- 50,194,619(+) AGGCC(G/T)CCTGC intron-variant
rs732405 -- 50,190,863(+) AAGGG(G/T)CCGGG intron-variant, upstream-variant-2KB
rs732710 -- 50,194,076(+) ACCCC(C/T)AAGGT intron-variant
rs735119 -- 50,190,317(+) TGCCC(A/G/T)CCCTG intron-variant, upstream-variant-2KB
rs738338 -- 50,187,371(+) GGCCA(A/G)AGGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRABD Gene

Variant ID Type Subtype PubMed ID
nsv915495 CNV Loss 21882294
dgv5051n71 CNV Loss 21882294
nsv915519 CNV Loss 21882294
dgv5054n71 CNV Loss 21882294
nsv915525 CNV Loss 21882294
dgv781n67 CNV Gain 20364138
dgv5055n71 CNV Loss 21882294
nsv829333 CNV Gain 20364138
dgv5056n71 CNV Loss 21882294
dgv5057n71 CNV Loss 21882294
nsv914511 CNV Loss 21882294
nsv914515 CNV Gain 21882294
esv2724755 CNV Deletion 23290073
esv2724756 CNV Deletion 23290073
esv2724757 CNV Deletion 23290073
nsv191327 CNV Loss 16902084
nsv471223 CNV Loss 18288195

Relevant External Links for TRABD Gene

HapMap Linkage Disequilibrium report
TRABD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRABD Gene

Disorders for TRABD Gene

No disorders were found for TRABD Gene.

No data available for UniProtKB/Swiss-Prot for TRABD Gene

Publications for TRABD Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3 4
  3. Characterization of long cDNA clones from human adult spleen. (PMID: 11214971) Hattori A. … Ohara O. (DNA Res. 2000) 3 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  5. Reevaluating human gene annotation: a second-generation analysis of chromosome 22. (PMID: 12529303) Collins J.E. … Dunham I. (Genome Res. 2003) 3 4

Products for TRABD Gene

Sources for TRABD Gene

Back to Top

Content