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TRA2B Gene

protein-coding GIFtS: 55
GCID: GC03M185632

Transformer 2 Beta Homolog (Drosophila)

(Previous names: splicing factor, arginine/serine-rich 10 (transformer 2...)
(Previous symbol: SFRS10)

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Aliases
Transformer 2 Beta Homolog (Drosophila)¹ ²		TRA2-BETA²
SFRS10¹ ² ³ ⁵		TRAN2B²
Splicing Factor, Arginine/Serine-Rich 10 (Transformer 2 Homolog, Drosophila)¹ ²		Transformer-2 Protein Homolog Beta²
Transformer-2 Protein Homolog B² ³		TRA2-beta³
TRA-2 Beta² ³		hTRA2-beta³
Htra2-beta²		Splicing Factor, Arginine/Serine-Rich 10³
SRFS10²

External Ids:	HGNC: 10781¹	Entrez Gene: 6434²	Ensembl: ENSG00000136527⁷	OMIM: 602719⁵	UniProtKB: P62995³

Export aliases for TRA2B gene to outside databases

Previous GC identifers: GC03M187110 GC03M183042

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for TRA2B Gene:

This gene encodes a nuclear protein which functions as sequence-specific serine/arginine splicing factor which

plays a role in mRNA processing, splicing patterns, and gene expression. Alternative splicing results in multiple

transcript variants. (provided by RefSeq, Aug 2011)

GeneCards Summary for TRA2B Gene:

TRA2B (transformer 2 beta homolog (Drosophila)) is a protein-coding gene. Diseases associated with TRA2B include tauopathy, and frontotemporal dementia. GO annotations related to this gene include mRNA binding and nucleotide binding. An important paralog of this gene is RBMY1J.

UniProtKB/Swiss-Prot: TRA2B_HUMAN, P62995

Function: Sequence-specific RNA-binding protein which participates in the control of pre-mRNA splicing. Can either

activate or suppress exon inclusion. Acts additively with RBMX to promote exon 7 inclusion of the survival motor

neuron SMN2. Activates the splicing of MAPT/Tau exon 10. Alters pre-mRNA splicing patterns by antagonizing the

effects of splicing regulators, like RBMX. Binds to the AG-rich SE2 domain in the SMN exon 7 RNA. Binds to

pre-mRNA

Gene Wiki entry for TRA2B Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:

NC_000003.12 NT_005612.17 NC_018914.2

Regulatory elements:

Regulatory transcription factor binding sites in the TRA2B gene promoter:
HFH-3 p53 ATF-2 Bach2 CUTL1 POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) POU3F2 FOXI1 MRF-2
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: TRA2B promoter sequence

Search Chromatin IP Primers for TRA2B

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRA2B

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q26.2-q27 Ensembl cytogenetic band: 3q27.2 HGNC cytogenetic band: 3q26.2-q27

TRA2B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRA2B gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M185632: view genomic region (about GC identifiers)

Start:	185,632,356 bp from pter	End:	185,655,924 bp from pter
Size:	23,569 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: TRA2B_HUMAN, P62995 (See protein sequence)

Recommended Name: Transformer-2 protein homolog beta

Size: 288 amino acids; 33666 Da

Subunit: Interacts with SAFB/SAFB1 (By similarity). Found in a pre-mRNA exonic splicing enhancer (ESE) complex

with TRA2B/SFRS10, SNRNP70, SNRPA1 and SRRM1. Binds to A3 enhancer proteins SFRS4, SFRS5, SFRS6 and SFRS9.

Interacts with CPSF6, RBMY1A1, RBMX, RNPS1 and phosphorylated SFRS13A

4 PDB 3D structures from and Proteopedia for TRA2B:

2CQC (3D)

2KXN (3D)

2RRA (3D)

2RRB (3D)

Secondary accessions: B4DVK2 D3DNU3 O15449 Q15815 Q64283

Alternative splicing: 3 isoforms: P62995-1, Q15815-1 P62995-2, Q15815-2 P62995-3, Q15815-3

Explore the universe of human proteins at neXtProt for TRA2B: NX_P62995

Explore proteomics data for TRA2B at MOPED

Post-translational modifications:

Phosphorylated in the RS domains¹

Dimethylation at Arg-241 is probably asymmetric¹

Ubiquitination² at Lys140, Lys197

Modification sites at PhosphoSitePlus

See TRA2B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts):

NP_001230808.1 NP_004584.1

ENSEMBL proteins:

ENSP00000416959 ENSP00000259043 ENSP00000406561 ENSP00000416887 ENSP00000371626

ENSP00000343857

TRA2B Human Recombinant Protein Products:

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	Novus Biologicals TRA2B Proteins Novus Biologicals TRA2B Lysate
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TRA2B Antibody Products:

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	Novus Biologicals TRA2B Antibodies
	Search for Antibodies for TRA2B at Abcam
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	ThermoFisher Antibodies for TRA2B
	LSBio Antibodies in human, mouse, rat for TRA2B

TRA2B Assay Products:

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	Browse ELISAs at Cloud-Clone Corp. Browse CLIAs at Cloud-Clone Corp.

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:

RBM: RNA binding motif (RRM) containing

2 InterPro protein domains:

IPR000504 RRM_dom

IPR012677 Nucleotide-bd_a/b_plait

Graphical View of Domain Structure for InterPro Entry P62995

ProtoNet protein and cluster: P62995

UniProtKB/Swiss-Prot: TRA2B_HUMAN, P62995

Similarity: Belongs to the splicing factor SR family

Similarity: Contains 1 RRM (RNA recognition motif) domain

TRA2B for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: TRA2B_HUMAN, P62995

Function: Sequence-specific RNA-binding protein which participates in the control of pre-mRNA splicing. Can either

activate or suppress exon inclusion. Acts additively with RBMX to promote exon 7 inclusion of the survival motor

neuron SMN2. Activates the splicing of MAPT/Tau exon 10. Alters pre-mRNA splicing patterns by antagonizing the

effects of splicing regulators, like RBMX. Binds to the AG-rich SE2 domain in the SMN exon 7 RNA. Binds to

pre-mRNA

Gene Ontology (GO): 5 molecular function terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000166	nucleotide binding	IEA	--
GO:0003676	nucleic acid binding	--	--
GO:0003729	mRNA binding	IDA	12165565
GO:0005515	protein binding	IPI	10749975
GO:0044822	poly(A) RNA binding	IDA	--

TRA2B for ontologies About GeneDecksing

Phenotypes:
6 MGI mutant phenotypes (inferred from 4 alleles) (MGI details for Tra2b):

cardiovascular system	embryogenesis	growth/size/body	homeostasis/metabolism	mortality/aging
normal

TRA2B for phenotypes About GeneDecksing

Animal Models:
MGI mouse knock-out Tra2b^tm1.2Bwir for TRA2B

inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TRA2B

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genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for TRA2B

miRNA Products:		miRTarBase miRNAs that target TRA2B: hsa-mir-378a-3p (MIRT043884), hsa-mir-17-5p (MIRT050923), hsa-mir-1 (MIRT024099), hsa-mir-30c-5p (MIRT047840), hsa-mir-10a-5p (MIRT006537), hsa-mir-196a-5p (MIRT048194), hsa-mir-10b-5p (MIRT006538)

		Block miRNA regulation of human, mouse, rat TRA2B using miScript Target Protectors
		Selected qRT-PCR Assays for microRNAs that regulate TRA2B (see all 102):
		hsa-miR-579 hsa-miR-548j hsa-miR-3607-3p hsa-miR-199a-3p hsa-miR-3653 hsa-miR-371-5p hsa-miR-4267 hsa-miR-4274

		SwitchGear 3'UTR luciferase reporter plasmid: TRA2B 3' UTR sequence

Inhib. RNA Products:		OriGene RNAi products in human, mouse, rat for TRA2B
		Predesigned siRNA for gene silencing in human, mouse, rat TRA2B

Gene Editing
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		Browse ESI BIO Cell Lines and PureStem Progenitors for TRA2B

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRA2B

(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

TRA2B_HUMAN, P62995: Nucleus

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
nucleus	5
cytosol	3

About this image

Gene Ontology (GO): 1 cellular component term: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	9546399

TRA2B for ontologies About GeneDecksing

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for TRA2B About

See pathways by source

SuperPath

Contained pathways About

mRNA Splicing - Major Pathway

mRNA processing

0.44

Spliceosome

Spliceosome

Pathways by source See SuperPaths
Show all pathways

1 BioSystems Pathway for TRA2B

mRNA processing

1 Kegg Pathway (Kegg details for TRA2B):

Spliceosome

TRA2B for pathways About GeneDecksing

Custom Pathway & Disease-focused RT² Profiler PCR Arrays for TRA2B
Interactions:

Search GeneGlobe Interaction Network for TRA2B

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for TRA2B (P62995^{2, 3} ENSP00000416959⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 116)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
SF3A2	Q15428²^,³, ENSP00000221494⁴	MINT-5205773 I2D: score=1 STRING: ENSP00000221494
ENSG00000235068	Q01860³, ENSP00000405041⁴	I2D: score=1 STRING: ENSP00000405041
ENSG00000206454	Q01860³	I2D: score=1
ENSG00000229094	Q01860³	I2D: score=1
ENSG00000230336	Q01860³	I2D: score=1

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Gene Ontology (GO): 5 biological process terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000302	response to reactive oxygen species	--	--
GO:0000375	RNA splicing, via transesterification reactions	TAS	9546399
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IDA	12165565
GO:0000398	mRNA splicing, via spliceosome	IDA	9546399
GO:0048026	positive regulation of mRNA splicing, via spliceosome	IDA	15009664

TRA2B for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse compounds at ApexBio

Browse Tocris compounds for TRA2B

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for TRA2B gene (2 alternative transcripts):

NM_001243879.1 NM_004593.2

Unigene Cluster for TRA2B:

Transformer 2 beta homolog (Drosophila)

Hs.533122 [show with all ESTs]

Unigene Representative Sequence: AB209208

16 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000453386(uc010hym.3 uc003fpv.3) ENST00000492417 ENST00000463328(uc003fpt.3)

ENST00000259043 ENST00000414862 ENST00000466832 ENST00000487615(uc003fpu.3)

ENST00000456380(uc003fpx.2) ENST00000382191 ENST00000465245 ENST00000485530

ENST00000493864 ENST00000477939 ENST00000471134 ENST00000480461 ENST00000342294

miRNA Products:		Block miRNA regulation of human, mouse, rat TRA2B using miScript Target Protectors
		Selected qRT-PCR Assays for microRNAs that regulate TRA2B (see all 102):
		hsa-miR-579 hsa-miR-548j hsa-miR-3607-3p hsa-miR-199a-3p hsa-miR-3653 hsa-miR-371-5p hsa-miR-4267 hsa-miR-4274

		SwitchGear 3'UTR luciferase reporter plasmid: TRA2B 3' UTR sequence

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		GenScript: all cDNA clones in your preferred vector: TRA2B (NM_004593)
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Primer Products:		OriGene qPCR primer pairs and template standards for TRA2B OriGene qSTAR qPCR primer pairs in human, mouse for TRA2B
		Pre-validated RT² qPCR Primer Assay in human, mouse, rat TRA2B
		QuantiTect SYBR Green Assays in human, mouse, rat TRA2B
		QuantiFast Probe-based Assays in human, mouse, rat TRA2B

Additional mRNA sequence:

AB209208.1 AK091863.1 AK094495.1 AK098191.1 AK125610.1 AK301118.1 AK308267.1 AK315632.1

BC000160.2 BC000451.2 BC005898.1 CR749214.1 U61267.1 U68063.1 U87836.1

Selected DOTS entries (see all 35):

DT.91761815 DT.92360269 DT.100730598 DT.95233361 DT.100878524 DT.91761814 DT.100878535 DT.100878527

DT.97860426 DT.120855947 DT.100878536 DT.91761807 DT.120855962 DT.120855932 DT.75100088 DT.95310595

DT.120855981 DT.430536 DT.102833833 DT.120855959 DT.65287722 DT.91761810 DT.100673868 DT.121641868

Selected AceView cDNA sequences (see all 562):

AA766721 AA605141 H06499 BQ679910 AW188678 BC000451 AA256984 AA905040

AU135676 BE379157 BQ224286 BU192145 BQ939898 CR608950 BU170962 BM455262

BI963879 AI468719 BF436526 BC000160 BQ679347 AW272537 CR603112 AA946661

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for TRA2B (see all 11) About this scheme

ExUns:	1a	·	1b	·	1c	^	2	^	3	^	4a	·	4b	^	5	^	6a	·	6b	^	7a	·	7b	·	7c	·	7d	^	8a	·	8b	^	9	^	10a	·	10b	^	11	^	12	^	13a	·	13b	·	13c
SP1:							-		-		-		-		-										-		-		-
SP2:							-		-		-		-		-				-		-				-		-		-
SP3:																									-		-		-										-
SP4:
SP5:

ECgene alternative splicing isoforms for TRA2B

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TRA2B expression in normal human tissues (normalized intensities) TRA2B embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: GATGAACTGA

About this image

TRA2B expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database
selected tissues (see all 21) fully expand


Brain (Nervous System) fully expand to see all 4 entries
Cerebral Cortex

Ovary (Reproductive System) fully expand to see all 2 entries
Ovarian Mesenchymal Stroma Cells Ovary Interstitium
Oviduct

Testis (Reproductive System)
Leydig Cells Testis Interstitium

Neural Tube (Nervous System)
Telencephalon

Trophoblast (Extraembryonic Tissues)
Trophoblast Cells Trophoblast

TRA2B Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

TRA2B Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.533122

UniProtKB/Swiss-Prot: TRA2B_HUMAN, P62995

Tissue specificity: Highest expression in heart, skeletal muscle and pancreas. Less abundant in kidney, placenta

and brain. Lowest expression in kidney and liver

Custom PCR Arrays for TRA2B

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		QuantiFast Probe-based Assays in human, mouse, rat TRA2B

In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRA2B

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for TRA2B gene from Selected species (see all 14) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Tra2b^{1 , 5}	transformer 2 beta homolog (Drosophila)^{1, 5}	91.67(n)¹ 100(a)¹		16 (13.18 cM)⁵ 20462¹ NM_009186.4¹ NP_033212.1¹ 22244549⁵
chicken (Gallus gallus)	Aves	TRA2B¹	transformer 2 beta homolog (Drosophila)	83.9(n) 98.13(a)		395403 NM_204678.1 NP_990009.1
lizard (Anolis carolinensis)	Reptilia	TRA2B⁶	transformer 2 beta homolog (Drosophila)	95(a)	1 ↔ 1	3(34282799-34312952)
African clawed frog (Xenopus laevis)	Amphibia	LOC398448²	similar to splicing factor, arginine/serine-rich (transformer more	75.63(n)		BC044695.1
zebrafish (Danio rerio)	Actinopterygii	zgc56612²	similar to splicing factor, arginine/serine-rich 1 more	75.65(n)		394172 BC049051.1
fruit fly (Drosophila melanogaster)	Insecta	tra2⁶	transformer 2	44(a)	1 → many	2R(10489509-10491857)
worm (Caenorhabditis elegans)	Secernentea	rsp-8⁶	Protein RSP-8, isoform a	35(a)	1 → many	III(11826215-11831475) WBGene00004705

ENSEMBL Gene Tree for TRA2B (if available)
TreeFam Gene Tree for TRA2B (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for TRA2B gene

RBMY1J² RBMY1E² RBMY1F² RBMXL2² RBMXL3² RBMY1B² RBMXL1² RBMY1A1²

CIRBP² RBM3² RBMX² TRA2A² RBMY1D²

6 SIMAP similar genes for TRA2B using alignment to 3 protein entries: TRA2B_HUMAN (see all proteins):

DKFZp686F18120 HSU53209 TRA2A RBMY1A1 CIRBP SRSF10

TRA2B for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs61543617^1,2	C	--	183042746(+)	`CACAC-/AC/CC CAACG`	2	--	ds500¹		0	--	--	--	--
rs144598833^1,2	C	--	183045281(+)	`CCATG-/ACACAGG`	2	--	ut3¹		0	--	--	--	--
rs71694444^1,2	C	--	183045283(+)	`CATGA-/AC/CA CAGGT`	4	--	ut3¹		0	--	--	--	--
rs148354847^1,2	C	--	183063745(+)	`CCTTT-/GAGAGGG`	2	--	int¹		0	--	--	--	--
rs141499630^1,2	C	--	183065114(+)	`TTCCC-/ACAACAGC`	2	--	cds¹		0	--	--	--	--
rs200753986^1,2		--	183065116(+)	`CCCAC-/AATAGCCT`	2	--	cds¹		0	--	--	--	--
rs377719167^1,2	C	--	183065116(+)	`TCCCA-/ACACAGCC`	2	--	cds¹		0	--	--	--	--
rs146693894^1,2		--	185500396(+)	`TAGTTC/TGAGAC`	2	--	ds500¹		0	--	--	--	--
rs192028032^1,2		--	185500425(+)	`CAAACC/GCTGTC`	2	--	ds500¹		0	--	--	--	--
rs10656633^1,2	C	--	185500426(+)	`aaccc-/TGtgtct`	2	--	ds500¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for TRA2B (185632356 - 185655924 bp)

Structural Variations
Database of Genomic Variants (DGV) 2 variations for TRA2B: About this table

Variant ID	Type	Subtype	PubMed ID
esv2660289	CNV	Deletion	23128226
nsv461035	CNV	Loss	19166990

Human Gene Mutation Database (HGMD): TRA2B

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 602719 OMIM disorders: --

20 diseases for TRA2B: About MalaCards

tauopathy frontotemporal dementia spinal muscular atrophy muscular atrophy

dementia cervical cancer obesity cervicitis

hypoxia asthma tonsillitis ovarian cancer

alzheimer's disease hiv-1 thyroiditis breast cancer

neuronitis cerebritis prostatitis endotheliitis

TRA2B for disorders About GeneDecksing

Congresses - knowledge worth sharing:
Alzheimer's & Parkinson's Diseases Congress (ADPD) 18 - 22 March 2015

1 Novoseek inferred disease relationship for TRA2B gene About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
tauopathies	68.6	1	12649279 (1)

Genetic Association Database (GAD): TRA2B
Human Genome Epidemiology (HuGE) Navigator: TRA2B (3 documents)

Export disorders for TRA2B gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for TRA2B gene, integrated from 10 sources (see all 81):
(articles sorted by number of sources associating them with TRA2B)

Utopia: connect your pdf to the dynamic
world of online information

Human transformer-2-beta gene (SFRS10): complete nucleotide sequence, chromosomal localization, and generation of a tissue-specific isoform. (PubMed id 9790768)^{1, 2, 3, 9} Nayler O.... Stamm S. (Genomics 1998)
Human RNPS1 and its associated factors: a versatile alternative pre- mRNA splicing regulator in vivo. (PubMed id 14729963)^{1, 2, 9} Sakashita E.... Mayeda A. (Mol. Cell. Biol. 2004)
Molecular cloning of htra2-beta-1 and htra2-beta-2, two human homologs of tra-2 generated by alternative splicing. (PubMed id 9212162)^{1, 2, 9} Beil B.... Stamm S. (DNA Cell Biol. 1997)
Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. (PubMed id 21102462)^{1, 4} Elks C.E....Murray A. (Nat. Genet. 2010)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{1, 2} Olsen J.V....Mann M. (Cell 2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (Nat. Genet. 2004)
Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization. (PubMed id 15169763)^{1, 2} Dettwiler S.... Barabino S.M. (J. Biol. Chem. 2004)
Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors. (PubMed id 15009664)^{1, 2} Wang J.... Andreadis A. (J. Neurochem. 2004)
Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock. (PubMed id 14765198)^{1, 2} Shin C.... Manley J.L. (Nature 2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 6434	HGNC: 10781	AceView: SFRS10	Ensembl:ENSG00000136527	euGenes: HUgn6434
ECgene: TRA2B	Kegg: 6434	H-InvDB: TRA2B

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for TRA2B	Pharmacogenomics, SNPs, Pathways

Intellectual Property for TRA2B gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for TRA2B gene:
Search GeneIP for patents involving TRA2B

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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Transformer 2 Beta Homolog (Drosophila)

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Transformer 2 Beta Homolog (Drosophila)

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