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Aliases for TRA-TGC10-1 Gene

Subcategory (RNA class) for TRA-TGC10-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRA-TGC10-1 Gene

  • Transfer RNA-Ala (TGC) 10-1 2 3
  • Transfer RNA Alanine 45 (Anticodon UGC) Pseudogene 2 3
  • TRNA-Ala-TGC-10-1 3
  • TRNAA45P 3

External Ids for TRA-TGC10-1 Gene

Previous HGNC Symbols for TRA-TGC10-1 Gene

  • TRNAA45P

Summaries for TRA-TGC10-1 Gene

GeneCards Summary for TRA-TGC10-1 Gene

TRA-TGC10-1 (Transfer RNA-Ala (TGC) 10-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-TGC10-1 Gene

Genomics for TRA-TGC10-1 Gene

Regulatory Elements for TRA-TGC10-1 Gene

Enhancers for TRA-TGC10-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F060995 0.5 Ensembl ENCODE 0.8 +0.6 557 1.3 CTCF HDGF ASH2L POLR2A EED ZNF143 FOS CREM GATAD2A NFIA CD6 GC11M060996 TRA-TGC10-1
GH11F060993 0.8 ENCODE 0.8 -1.1 -1116 1.8 HDGF CTCF ASH2L IRF3 RAD21 POLR2A EED ZNF143 NR2F6 CREM CD6 TRA-TGC10-1 RNU6-933P
GH11F060992 0.2 ENCODE 0.8 -2.7 -2734 0.8 SCRT1 ZNF316 RFX1 TAL1 GLIS1 MYNN CD6 CPSF7 TRA-TGC10-1 RNU6-933P
GH11F060988 1.1 Ensembl ENCODE 0.4 -6.7 -6686 1.1 MITF CTCF CBFB ZNF133 RAD21 RNU6-933P TRA-TGC10-1
GH11F060984 1.2 FANTOM5 Ensembl ENCODE 0.4 -9.7 -9734 3.8 USF1 ZBTB40 ZNF316 ZNF766 FOXK2 NFE2 MAFK TCF7L2 RFX1 RNF2 CD5 CD6 SLC15A3 TMEM132A VPS37C FTH1 SDHAF2 RNU6-933P TRA-TGC10-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRA-TGC10-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRA-TGC10-1 Gene

Chromosome:
11
Start:
60,996,036 bp from pter
End:
60,996,105 bp from pter
Size:
70 bases
Orientation:
Plus strand

Genomic View for TRA-TGC10-1 Gene

Genes around TRA-TGC10-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-TGC10-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-TGC10-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRA-TGC10-1 Gene

Proteins for TRA-TGC10-1 Gene

Post-translational modifications for TRA-TGC10-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-TGC10-1 Gene

Domains & Families for TRA-TGC10-1 Gene

Gene Families for TRA-TGC10-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-TGC10-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-TGC10-1 Gene

Function for TRA-TGC10-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-TGC10-1 Gene

Localization for TRA-TGC10-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRA-TGC10-1 Gene

Pathways & Interactions for TRA-TGC10-1 Gene

SuperPathways for TRA-TGC10-1 Gene

No Data Available

Interacting Proteins for TRA-TGC10-1 Gene

Gene Ontology (GO) - Biological Process for TRA-TGC10-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-TGC10-1 Gene

Transcripts for TRA-TGC10-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-TGC10-1 Gene

No ASD Table

Relevant External Links for TRA-TGC10-1 Gene

GeneLoc Exon Structure for
TRA-TGC10-1
ECgene alternative splicing isoforms for
TRA-TGC10-1

No data available for mRNA/cDNA for TRA-TGC10-1 Gene

Expression for TRA-TGC10-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRA-TGC10-1 Gene

Orthologs for TRA-TGC10-1 Gene

No data available for Orthologs and Evolution for TRA-TGC10-1 Gene

Paralogs for TRA-TGC10-1 Gene

No data available for Paralogs for TRA-TGC10-1 Gene

Variants for TRA-TGC10-1 Gene

Relevant External Links for TRA-TGC10-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-TGC10-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-TGC10-1 Gene

Disorders for TRA-TGC10-1 Gene

No disorders were found for TRA-TGC10-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-TGC10-1 Gene

Publications for TRA-TGC10-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRA-TGC10-1 Gene

Sources for TRA-TGC10-1 Gene

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