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Aliases for TRA-CGC5-1 Gene

Subcategory (RNA class) for TRA-CGC5-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRA-CGC5-1 Gene

  • Transfer RNA-Ala (CGC) 5-1 2 3
  • Transfer RNA Alanine 38 (Anticodon CGC) 2 3
  • TRNA-Ala-CGC-5-1 3
  • TRNAA38 3

External Ids for TRA-CGC5-1 Gene

ORGUL Members for TRA-CGC5-1 Gene

Previous HGNC Symbols for TRA-CGC5-1 Gene

  • TRNAA38

Previous GeneCards Identifiers for TRA-CGC5-1 Gene

  • GC06M028696
  • GC06M028698
  • GC06M028699
  • GC06M028700
  • GC06M028701
  • GC06M028702

Summaries for TRA-CGC5-1 Gene

GeneCards Summary for TRA-CGC5-1 Gene

TRA-CGC5-1 (Transfer RNA-Ala (CGC) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRA-CGC5-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-CGC5-1 Gene

Genomics for TRA-CGC5-1 Gene

Regulatory Elements for TRA-CGC5-1 Gene

Enhancers for TRA-CGC5-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H028709 1.3 Ensembl ENCODE 0.4 -14.1 -14059 2 HDGF PKNOX1 ARNT SIN3A ZNF2 ZNF766 SP3 MCM5 REST ZNF592 ZKSCAN4 ZKSCAN8 ZKSCAN3 ZSCAN12 ZSCAN9 ZSCAN23 GABBR1 TRIM27 PGBD1 SUMO2P1
GH06H028694 0.4 ENCODE 0.7 +1.7 1685 0 EZH2 GPX6 TRA-CGC5-1 TRK-TTT13-1 GC06M028706 GC06M028697
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRA-CGC5-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRA-CGC5-1 Gene

Chromosome:
6
Start:
28,695,932 bp from pter
End:
28,696,003 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-CGC5-1 Gene

Genes around TRA-CGC5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-CGC5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-CGC5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRA-CGC5-1 Gene

Proteins for TRA-CGC5-1 Gene

Post-translational modifications for TRA-CGC5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-CGC5-1 Gene

Domains & Families for TRA-CGC5-1 Gene

Gene Families for TRA-CGC5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-CGC5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-CGC5-1 Gene

Function for TRA-CGC5-1 Gene

Phenotypes From GWAS Catalog for TRA-CGC5-1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRA-CGC5-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-CGC5-1 Gene

Localization for TRA-CGC5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRA-CGC5-1 Gene

Pathways & Interactions for TRA-CGC5-1 Gene

SuperPathways for TRA-CGC5-1 Gene

No Data Available

Interacting Proteins for TRA-CGC5-1 Gene

Gene Ontology (GO) - Biological Process for TRA-CGC5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-CGC5-1 Gene

Drugs & Compounds for TRA-CGC5-1 Gene

No Compound Related Data Available

Transcripts for TRA-CGC5-1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRA-CGC5-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-CGC5-1 Gene

No ASD Table

Relevant External Links for TRA-CGC5-1 Gene

GeneLoc Exon Structure for
TRA-CGC5-1
ECgene alternative splicing isoforms for
TRA-CGC5-1

No data available for mRNA/cDNA for TRA-CGC5-1 Gene

Expression for TRA-CGC5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-CGC5-1 Gene

Orthologs for TRA-CGC5-1 Gene

No data available for Orthologs and Evolution for TRA-CGC5-1 Gene

Paralogs for TRA-CGC5-1 Gene

No data available for Paralogs for TRA-CGC5-1 Gene

Variants for TRA-CGC5-1 Gene

Relevant External Links for TRA-CGC5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-CGC5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-CGC5-1 Gene

Disorders for TRA-CGC5-1 Gene

No disorders were found for TRA-CGC5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-CGC5-1 Gene

Publications for TRA-CGC5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRA-CGC5-1 Gene

Sources for TRA-CGC5-1 Gene

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