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Aliases for TRA-CGC2-1 Gene

Subcategory (RNA class) for TRA-CGC2-1 Gene


Quality Score for this RNA gene is


Aliases for TRA-CGC2-1 Gene

  • Transfer RNA-Ala (CGC) 2-1 2 3
  • Transfer RNA Alanine 40 (Anticodon CGC) 2 3
  • TRNA-Ala-CGC-2-1 3
  • TRNAA40 3

External Ids for TRA-CGC2-1 Gene

ORGUL Members for TRA-CGC2-1 Gene

Previous HGNC Symbols for TRA-CGC2-1 Gene

  • TRNAA40

Summaries for TRA-CGC2-1 Gene

GeneCards Summary for TRA-CGC2-1 Gene

TRA-CGC2-1 (Transfer RNA-Ala (CGC) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-CGC2-1 Gene

Genomics for TRA-CGC2-1 Gene

Regulatory Elements for TRA-CGC2-1 Gene

Enhancers for TRA-CGC2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028673 1.3 Ensembl ENCODE 0.7 -0.3 -342 1.1 ATF1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 GTF3C2 FOS ZKSCAN3 ZNF603P ZKSCAN4 ZKSCAN8 GPX5 GPX6 ZBED9 TRA-CGC2-1 GC06M028676 PIR43008
GH06G028657 1.3 Ensembl ENCODE 0.4 +15.5 15506 2.0 HDGF HNRNPUL1 PKNOX1 ARNT ZFP64 ARID4B ZNF2 CBX5 FOS SP3 ZKSCAN3 ZKSCAN4 ZKSCAN8 TRA-AGC4-1 GC06M028666 GC06M028676 TRA-CGC2-1
GH06G028686 1 Ensembl ENCODE 0.4 -12.5 -12510 0.6 TBP CTCF RB1 TAF1 JUN TEAD4 BCL11B RAD21 ZNF507 HIC1 GPX6 PIR43008 GC06M028676 TRA-CGC2-1
GH06G028687 0.9 ENCODE 0.4 -14.0 -14012 0.2 HDAC1 ATF1 CBX3 RB1 TBL1XR1 ARNT ZBTB40 CHAMP1 TCF12 ELK1 GPX6 PIR43008 TRA-CGC2-1 GC06M028676
GH06G028688 0.9 ENCODE 0.4 -13.7 -13692 0.2 ATF1 FOXA2 ARNT TCF12 ELK1 CAVIN1 NCOA1 REST ZNF592 CREB3 ZNF603P GPX6 ZNF602P PIR43008 TRA-CGC2-1 GC06M028676
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRA-CGC2-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRA-CGC2-1 Gene

28,673,836 bp from pter
28,673,907 bp from pter
72 bases
Minus strand

Genomic View for TRA-CGC2-1 Gene

Genes around TRA-CGC2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-CGC2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-CGC2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRA-CGC2-1 Gene

Proteins for TRA-CGC2-1 Gene

Post-translational modifications for TRA-CGC2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-CGC2-1 Gene

Domains & Families for TRA-CGC2-1 Gene

Gene Families for TRA-CGC2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-CGC2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-CGC2-1 Gene

Function for TRA-CGC2-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-CGC2-1 Gene

Localization for TRA-CGC2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRA-CGC2-1 Gene

Pathways & Interactions for TRA-CGC2-1 Gene

SuperPathways for TRA-CGC2-1 Gene

No Data Available

Interacting Proteins for TRA-CGC2-1 Gene

Gene Ontology (GO) - Biological Process for TRA-CGC2-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRA-CGC2-1 Gene

Drugs & Compounds for TRA-CGC2-1 Gene

No Compound Related Data Available

Transcripts for TRA-CGC2-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-CGC2-1 Gene

No ASD Table

Relevant External Links for TRA-CGC2-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for TRA-CGC2-1 Gene

Expression for TRA-CGC2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-CGC2-1 Gene

Orthologs for TRA-CGC2-1 Gene

No data available for Orthologs and Evolution for TRA-CGC2-1 Gene

Paralogs for TRA-CGC2-1 Gene

No data available for Paralogs for TRA-CGC2-1 Gene

Variants for TRA-CGC2-1 Gene

Relevant External Links for TRA-CGC2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-CGC2-1 Gene

Disorders for TRA-CGC2-1 Gene

No disorders were found for TRA-CGC2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-CGC2-1 Gene

Publications for TRA-CGC2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRA-CGC2-1 Gene

Sources for TRA-CGC2-1 Gene

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