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Aliases for TRA-AGC6-1 Gene

Subcategory (RNA class) for TRA-AGC6-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRA-AGC6-1 Gene

  • Transfer RNA-Ala (AGC) 6-1 2 3
  • Transfer RNA Alanine 6 (Anticodon AGC) 2 3
  • TRNA-Ala-AGC-6-1 3
  • TRNAA6 3

External Ids for TRA-AGC6-1 Gene

ORGUL Members for TRA-AGC6-1 Gene

Previous HGNC Symbols for TRA-AGC6-1 Gene

  • TRNAA6

Previous GeneCards Identifiers for TRA-AGC6-1 Gene

  • GC06M028814
  • GC06M028820
  • GC06M028839
  • GC06M028841

Summaries for TRA-AGC6-1 Gene

GeneCards Summary for TRA-AGC6-1 Gene

TRA-AGC6-1 (Transfer RNA-Ala (AGC) 6-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-AGC6-1 Gene

Genomics for TRA-AGC6-1 Gene

Regulatory Elements for TRA-AGC6-1 Gene

Enhancers for TRA-AGC6-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F028807 1.3 Ensembl ENCODE 0.8 +3.8 3846 1.4 PKNOX1 CREB3L1 ARNT ARID4B FEZF1 ZNF2 FOS JUNB REST KAT8 TRIM27 ZKSCAN3 ZFP57 ZKSCAN4 ZKSCAN8 LINC01556 ZNF602P OR2B7P GC06M028843 GC06M028879
GH06F028814 1 FANTOM5 0.8 -2.2 -2235 0.1 ATF1 PKNOX1 CREB3L1 ZNF2 KLF7 REST ZNF518A KAT8 ZNF610 PBX2 ZNF311 ZKSCAN3 ZFP57 ZBED9 ZNF602P OR14J1 GPX6 OR2W1 OR2J3 OR2B3
GH06F028810 0.9 ENCODE 0.8 +1.7 1665 0.2 ARNT ZNF76 ZNF48 ZNF2 ZEB1 ZNF366 ZNF391 SMARCA5 ZNF362 ELF1 GC06M028843 GC06M028879 TRA-AGC6-1 TRF-GAA3-1
GH06F028811 0.9 ENCODE 0.8 +2.0 1975 0.1 YBX3 ARNT ZNF76 ZNF48 ZBTB40 RAD21 ZNF2 ZEB1 ZNF366 ZNF391 ZNF603P GC06M028843 GC06M028879 TRA-AGC6-1 TRF-GAA3-1
GH06F028809 0.8 Ensembl 0.8 +2.2 2243 0.2 YBX3 TBP PKNOX1 ARNT ZBTB40 ZNF2 ZNF366 ZNF391 SMARCA5 ZNF362 ZFP57 GC06M028843 GC06M028879 TRA-AGC6-1 TRF-GAA3-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRA-AGC6-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRA-AGC6-1 Gene

Chromosome:
6
Start:
28,812,072 bp from pter
End:
28,812,143 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-AGC6-1 Gene

Genes around TRA-AGC6-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-AGC6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC6-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRA-AGC6-1 Gene

Post-translational modifications for TRA-AGC6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC6-1 Gene

Domains & Families for TRA-AGC6-1 Gene

Gene Families for TRA-AGC6-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-AGC6-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-AGC6-1 Gene

Function for TRA-AGC6-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC6-1 Gene

Localization for TRA-AGC6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRA-AGC6-1 Gene

Pathways & Interactions for TRA-AGC6-1 Gene

SuperPathways for TRA-AGC6-1 Gene

No Data Available

Interacting Proteins for TRA-AGC6-1 Gene

Gene Ontology (GO) - Biological Process for TRA-AGC6-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-AGC6-1 Gene

Transcripts for TRA-AGC6-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC6-1 Gene

No ASD Table

Relevant External Links for TRA-AGC6-1 Gene

GeneLoc Exon Structure for
TRA-AGC6-1
ECgene alternative splicing isoforms for
TRA-AGC6-1

No data available for mRNA/cDNA for TRA-AGC6-1 Gene

Expression for TRA-AGC6-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRA-AGC6-1 Gene

Orthologs for TRA-AGC6-1 Gene

No data available for Orthologs and Evolution for TRA-AGC6-1 Gene

Paralogs for TRA-AGC6-1 Gene

No data available for Paralogs for TRA-AGC6-1 Gene

Variants for TRA-AGC6-1 Gene

Relevant External Links for TRA-AGC6-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC6-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC6-1 Gene

Disorders for TRA-AGC6-1 Gene

No disorders were found for TRA-AGC6-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC6-1 Gene

Publications for TRA-AGC6-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRA-AGC6-1 Gene

Sources for TRA-AGC6-1 Gene

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