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Aliases for TRA-AGC23-1 Gene

Subcategory (RNA class) for TRA-AGC23-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRA-AGC23-1 Gene

  • Transfer RNA-Ala (AGC) 23-1 2 3
  • Transfer RNA Alanine 44 (Anticodon AGC) Pseudogene 2 3
  • TRNA-Ala-AGC-23-1 3
  • TRNAA44P 3

External Ids for TRA-AGC23-1 Gene

ORGUL Members for TRA-AGC23-1 Gene

Previous HGNC Symbols for TRA-AGC23-1 Gene

  • TRNAA44P

Summaries for TRA-AGC23-1 Gene

GeneCards Summary for TRA-AGC23-1 Gene

TRA-AGC23-1 (Transfer RNA-Ala (AGC) 23-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-AGC23-1 Gene

Genomics for TRA-AGC23-1 Gene

Regulatory Elements for TRA-AGC23-1 Gene

Enhancers for TRA-AGC23-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028775 1.3 ENCODE dbSUPER 0.7 +2.3 2309 1.3 HDGF ATF1 ARNT SIN3A FEZF1 ZNF2 ETS1 TCF12 ZNF766 GATA2 TRIM27 ZNF603P TRA-AGC23-1 TRF-GAA5-1
GH06G028777 1.1 ENCODE dbSUPER 0.7 +1.6 1560 0.2 HDAC1 ZNF133 ZNF2 ZNF23 ZNF766 GATA2 ZSCAN5C SCRT2 KLF7 ZBTB11 TRIM27 TRA-AGC23-1 TRF-GAA5-1
GH06G028781 0.9 dbSUPER 0.7 -3.2 -3220 1.3 HDGF PKNOX1 ATF1 ARNT YY1 TCF12 MCM5 ZNF592 KAT8 SREBF1 ZFP57 ZNF603P TRIM27 GC06M028781 TRA-AGC23-1
GH06G028776 0.9 ENCODE 0.7 +3.1 3100 0.2 HDAC1 ATF1 NFRKB SIN3A ZNF335 SCRT2 CREM SMARCA5 ZNF362 MIER1 LINC01556 TRA-AGC23-1 TRF-GAA5-1
GH06G028772 1.1 ENCODE dbSUPER 0.4 +6.1 6080 0.2 PKNOX1 TBL1XR1 ARNT EGR1 FOS CREM JUNB ZEB2 REST ELF1 ZNF603P TRA-AGC23-1 TRF-GAA5-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRA-AGC23-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRA-AGC23-1 Gene

Chromosome:
6
Start:
28,778,767 bp from pter
End:
28,778,838 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-AGC23-1 Gene

Genes around TRA-AGC23-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-AGC23-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC23-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRA-AGC23-1 Gene

Post-translational modifications for TRA-AGC23-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC23-1 Gene

Domains & Families for TRA-AGC23-1 Gene

Gene Families for TRA-AGC23-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-AGC23-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-AGC23-1 Gene

Function for TRA-AGC23-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC23-1 Gene

Localization for TRA-AGC23-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRA-AGC23-1 Gene

Pathways & Interactions for TRA-AGC23-1 Gene

SuperPathways for TRA-AGC23-1 Gene

No Data Available

Interacting Proteins for TRA-AGC23-1 Gene

Gene Ontology (GO) - Biological Process for TRA-AGC23-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-AGC23-1 Gene

Drugs & Compounds for TRA-AGC23-1 Gene

No Compound Related Data Available

Transcripts for TRA-AGC23-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC23-1 Gene

No ASD Table

Relevant External Links for TRA-AGC23-1 Gene

GeneLoc Exon Structure for
TRA-AGC23-1
ECgene alternative splicing isoforms for
TRA-AGC23-1

No data available for mRNA/cDNA for TRA-AGC23-1 Gene

Expression for TRA-AGC23-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-AGC23-1 Gene

Orthologs for TRA-AGC23-1 Gene

No data available for Orthologs and Evolution for TRA-AGC23-1 Gene

Paralogs for TRA-AGC23-1 Gene

No data available for Paralogs for TRA-AGC23-1 Gene

Variants for TRA-AGC23-1 Gene

Relevant External Links for TRA-AGC23-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC23-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC23-1 Gene

Disorders for TRA-AGC23-1 Gene

No disorders were found for TRA-AGC23-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC23-1 Gene

Publications for TRA-AGC23-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRA-AGC23-1 Gene

Sources for TRA-AGC23-1 Gene

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