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Aliases for TRA-AGC2-1 Gene

Subcategory (RNA class) for TRA-AGC2-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRA-AGC2-1 Gene

  • Transfer RNA-Ala (AGC) 2-1 2 3
  • Transfer RNA Alanine 13 (Anticodon AGC) 2 3
  • TRNA-Ala-AGC-2-1 3
  • TRNAA13 3

External Ids for TRA-AGC2-1 Gene

ORGUL Members for TRA-AGC2-1 Gene

Previous HGNC Symbols for TRA-AGC2-1 Gene

  • TRNAA13

Summaries for TRA-AGC2-1 Gene

GeneCards Summary for TRA-AGC2-1 Gene

TRA-AGC2-1 (Transfer RNA-Ala (AGC) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRA-AGC2-1 Gene

Genomics for TRA-AGC2-1 Gene

Regulatory Elements for TRA-AGC2-1 Gene

Enhancers for TRA-AGC2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028838 1.2 ENCODE 0.7 +0.0 36 2.2 CREB3L1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC GLIS1 RCOR2 NBN TRIM27 ZKSCAN3 ZKSCAN4 LINC01556 RPL23AP1 IFITM4P ZFP57 HCG14 ZKSCAN8 HLA-F-AS1
GH06G028836 0.7 ENCODE 0.7 +1.7 1667 0.1 TBP KLF1 ZNF362 CEBPB ZNF384 CEBPG ZSCAN23 MTA1 ZNF341 ADNP LINC01556 HCG14 TRIM27 GABBR1 SUMO2P1 GC06M028875 TRA-AGC2-1 GC06M028886
GH06G028837 0.7 ENCODE 0.7 +1.5 1547 0.0 TBP KLF1 ZNF362 CEBPB ZNF384 CEBPG ZSCAN23 MTA1 ZNF341 ADNP LINC01556 HCG14 TRIM27 SUMO2P1 GABBR1 GC06M028875 TRA-AGC2-1 GC06M028886
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRA-AGC2-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRA-AGC2-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195279 15 2600 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 NFYC GLIS1 RCOR2 NBN

Genomic Location for TRA-AGC2-1 Gene

Chromosome:
6
Start:
28,838,444 bp from pter
End:
28,838,515 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRA-AGC2-1 Gene

Genes around TRA-AGC2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRA-AGC2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRA-AGC2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRA-AGC2-1 Gene

Post-translational modifications for TRA-AGC2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRA-AGC2-1 Gene

Domains & Families for TRA-AGC2-1 Gene

Gene Families for TRA-AGC2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRA-AGC2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRA-AGC2-1 Gene

Function for TRA-AGC2-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRA-AGC2-1 Gene

Localization for TRA-AGC2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRA-AGC2-1 Gene

Pathways & Interactions for TRA-AGC2-1 Gene

SuperPathways for TRA-AGC2-1 Gene

No Data Available

Interacting Proteins for TRA-AGC2-1 Gene

Gene Ontology (GO) - Biological Process for TRA-AGC2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRA-AGC2-1 Gene

Drugs & Compounds for TRA-AGC2-1 Gene

No Compound Related Data Available

Transcripts for TRA-AGC2-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRA-AGC2-1 Gene

No ASD Table

Relevant External Links for TRA-AGC2-1 Gene

GeneLoc Exon Structure for
TRA-AGC2-1
ECgene alternative splicing isoforms for
TRA-AGC2-1

No data available for mRNA/cDNA for TRA-AGC2-1 Gene

Expression for TRA-AGC2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRA-AGC2-1 Gene

Orthologs for TRA-AGC2-1 Gene

No data available for Orthologs and Evolution for TRA-AGC2-1 Gene

Paralogs for TRA-AGC2-1 Gene

No data available for Paralogs for TRA-AGC2-1 Gene

Variants for TRA-AGC2-1 Gene

Relevant External Links for TRA-AGC2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRA-AGC2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRA-AGC2-1 Gene

Disorders for TRA-AGC2-1 Gene

No disorders were found for TRA-AGC2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRA-AGC2-1 Gene

Publications for TRA-AGC2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRA-AGC2-1 Gene

Sources for TRA-AGC2-1 Gene

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