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Aliases for TPTEP1 Gene

Aliases for TPTEP1 Gene

  • Transmembrane Phosphatase With Tensin Homology Pseudogene 1 2 3 5
  • Endogenous Retroviral Protease Pseudogene 3
  • TPTE Pseudogene 3
  • PsiTPTE22 3

External Ids for TPTEP1 Gene

Previous GeneCards Identifiers for TPTEP1 Gene

  • GC22P017085

Summaries for TPTEP1 Gene

GeneCards Summary for TPTEP1 Gene

TPTEP1 (Transmembrane Phosphatase With Tensin Homology Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPTEP1 Gene

Genomics for TPTEP1 Gene

Regulatory Elements for TPTEP1 Gene

Enhancers for TPTEP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TPTEP1 on UCSC Golden Path with GeneCards custom track

Promoters for TPTEP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TPTEP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPTEP1 Gene

Chromosome:
22
Start:
16,601,887 bp from pter
End:
16,698,742 bp from pter
Size:
96,856 bases
Orientation:
Plus strand

Genomic View for TPTEP1 Gene

Genes around TPTEP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPTEP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPTEP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTEP1 Gene

Proteins for TPTEP1 Gene

Post-translational modifications for TPTEP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTEP1 Gene

Domains & Families for TPTEP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPTEP1 Gene

Function for TPTEP1 Gene

Phenotypes for TPTEP1 Gene

GenomeRNAi human phenotypes for TPTEP1:
genes like me logo Genes that share phenotypes with TPTEP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPTEP1 Gene

Localization for TPTEP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPTEP1 Gene

Pathways & Interactions for TPTEP1 Gene

SuperPathways for TPTEP1 Gene

No Data Available

Interacting Proteins for TPTEP1 Gene

Gene Ontology (GO) - Biological Process for TPTEP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPTEP1 Gene

Drugs & Compounds for TPTEP1 Gene

No Compound Related Data Available

Transcripts for TPTEP1 Gene

Unigene Clusters for TPTEP1 Gene

Transmembrane phosphatase with tensin homology pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPTEP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18a · 18b · 18c ^
SP1:
SP2: - - -
SP3:
SP4: - - -
SP5: -
SP6:
SP7: - -
SP8:
SP9:
SP10:
SP11:

ExUns: 19a · 19b · 19c ^ 20a · 20b ^ 21 ^ 22
SP1:
SP2:
SP3:
SP4:
SP5:
SP6: - -
SP7:
SP8: -
SP9: - - -
SP10:
SP11:

Relevant External Links for TPTEP1 Gene

GeneLoc Exon Structure for
TPTEP1
ECgene alternative splicing isoforms for
TPTEP1

Expression for TPTEP1 Gene

mRNA expression in normal human tissues for TPTEP1 Gene

SOURCE GeneReport for Unigene cluster for TPTEP1 Gene Hs.474116

genes like me logo Genes that share expression patterns with TPTEP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TPTEP1 Gene

Orthologs for TPTEP1 Gene

Evolution for TPTEP1 Gene

ENSEMBL:
Gene Tree for TPTEP1 (if available)
TreeFam:
Gene Tree for TPTEP1 (if available)

No data available for Orthologs for TPTEP1 Gene

Paralogs for TPTEP1 Gene

No data available for Paralogs for TPTEP1 Gene

Variants for TPTEP1 Gene

Sequence variations from dbSNP and Humsavar for TPTEP1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs2096536 -- 16,613,780(+) atttc(G/T)gagtt intron-variant
rs2096537 -- 16,613,859(+) ctaag(A/C)cgcag intron-variant
rs2096538 -- 16,643,244(+) ttgtc(A/G)tagat intron-variant
rs2096539 -- 16,643,417(+) tgggt(A/G)tgttg intron-variant
rs2096540 -- 16,648,490(+) AAATA(G/T)GAAAA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for TPTEP1 Gene

Disorders for TPTEP1 Gene

Relevant External Links for TPTEP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPTEP1

No disorders were found for TPTEP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPTEP1 Gene

Publications for TPTEP1 Gene

  1. The TPTE gene family: cellular expression, subcellular localization and alternative splicing. (PMID: 14659893) Tapparel C. … Antonarakis S.E. (Gene 2003) 2 3 67
  2. The novel human endogenous retrovirus-related gene, psiTPTE22-HERV, is silenced by DNA methylation in cancers. (PMID: 20112338) Liang Q. … Zheng S. (Int. J. Cancer 2010) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Members of the RTVL-H family of human endogenous retrovirus-like elements are expressed in placenta. (PMID: 2551777) Johansen T. … Bjorklid E. (Gene 1989) 3

Products for TPTEP1 Gene

Sources for TPTEP1 Gene

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