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Aliases for TPTEP1 Gene

Aliases for TPTEP1 Gene

  • Transmembrane Phosphatase With Tensin Homology Pseudogene 1 2 3
  • Endogenous Retroviral Protease Pseudogene 3
  • TPTE Pseudogene 3
  • PsiTPTE22 3

External Ids for TPTEP1 Gene

Summaries for TPTEP1 Gene

GeneCards Summary for TPTEP1 Gene

TPTEP1 (Transmembrane Phosphatase With Tensin Homology Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPTEP1 Gene

Genomics for TPTEP1 Gene

Genomic Location for TPTEP1 Gene

Start:
16,601,887 bp from pter
End:
16,698,742 bp from pter
Size:
96,856 bases
Orientation:
Plus strand

Genomic View for TPTEP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TPTEP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTEP1 Gene

No data available for Regulatory Elements for TPTEP1 Gene

Proteins for TPTEP1 Gene

Post-translational modifications for TPTEP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTEP1 Gene

Domains for TPTEP1 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TPTEP1 Gene

Function for TPTEP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TPTEP1 Gene

Localization for TPTEP1 Gene

No data available for Gene Ontology (GO) - Cellular Components for TPTEP1 Gene

Pathways for TPTEP1 Gene

SuperPathways for TPTEP1 Gene

No Data Available

Interacting Proteins for TPTEP1 Gene

Gene Ontology (GO) - Biological Process for TPTEP1 Gene

None

No data available for Pathways by source for TPTEP1 Gene

Transcripts for TPTEP1 Gene

Unigene Clusters for TPTEP1 Gene

Transmembrane phosphatase with tensin homology pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPTEP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18a · 18b · 18c ^
SP1:
SP2: - - -
SP3:
SP4: - - -
SP5: -
SP6:
SP7: - -
SP8:
SP9:
SP10:
SP11:

ExUns: 19a · 19b · 19c ^ 20a · 20b ^ 21 ^ 22
SP1:
SP2:
SP3:
SP4:
SP5:
SP6: - -
SP7:
SP8: -
SP9: - - -
SP10:
SP11:

Relevant External Links for TPTEP1 Gene

GeneLoc Exon Structure for
TPTEP1
ECgene alternative splicing isoforms for
TPTEP1

Expression for TPTEP1 Gene

mRNA expression in normal human tissues for TPTEP1 Gene

SOURCE GeneReport for Unigene cluster for TPTEP1 Gene Hs.474116

genes like me logo Genes that share expressions with TPTEP1: view

Orthologs for TPTEP1 Gene

Evolution for TPTEP1 Gene

ENSEMBL:
Gene Tree for TPTEP1 (if available)
TreeFam:
Gene Tree for TPTEP1 (if available)

No data available for Orthologs for TPTEP1 Gene

Paralogs for TPTEP1 Gene

No data available for Paralogs for TPTEP1 Gene

Variants for TPTEP1 Gene

Sequence variations from dbSNP and Humsavar for TPTEP1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs303316 -- 16,644,445(+) atttc(A/T)atttt intron-variant
rs303318 -- 16,644,746(+) tgtag(A/G)ccaag intron-variant
rs303321 -- 16,645,138(+) ctgca(C/T)cactg intron-variant
rs558497 -- 16,647,105(-) TTCTT(A/G)CCATC intron-variant
rs602828 -- 16,647,223(-) AGGTG(G/T)AGCCA nc-transcript-variant

Relevant External Links for TPTEP1 Gene

HapMap Linkage Disequilibrium report
TPTEP1

No data available for Structural Variations from Database of Genomic Variants (DGV) for TPTEP1 Gene

Disorders for TPTEP1 Gene

No disorders were found for TPTEP1 Gene.

No data available for UniProtKB/Swiss-Prot for TPTEP1 Gene

Publications for TPTEP1 Gene

  1. The TPTE gene family: cellular expression, subcellular localization and alternative splicing. (PMID: 14659893) Tapparel C. … Antonarakis S.E. (Gene 2003) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. The novel human endogenous retrovirus-related gene, psiTPTE22-HERV, is silenced by DNA methylation in cancers. (PMID: 20112338) Liang Q. … Zheng S. (Int. J. Cancer 2010) 3
  4. Members of the RTVL-H family of human endogenous retrovirus-like elements are expressed in placenta. (PMID: 2551777) Johansen T. … Bjorklid E. (Gene 1989) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TPTEP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TPTEP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TPTEP1
    • Block miRNA regulation of TPTEP1 using miScript Target Protectors

    Sources for TPTEP1 Gene

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