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Aliases for TPTE2P6 Gene

Aliases for TPTE2P6 Gene

  • Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 6 2 3 5

External Ids for TPTE2P6 Gene

Previous GeneCards Identifiers for TPTE2P6 Gene

  • GC13P025155
  • GC13P024984

Summaries for TPTE2P6 Gene

GeneCards Summary for TPTE2P6 Gene

TPTE2P6 (Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPTE2P6 Gene

Genomics for TPTE2P6 Gene

Regulatory Elements for TPTE2P6 Gene

Enhancers for TPTE2P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G024540 1.3 FANTOM5 Ensembl ENCODE 17.9 +133.4 133366 1.6 CTCF ZNF687 L3MBTL2 DPF2 KLF4 MNT RAD21 ZNF592 FOXA1 GATA3 TPTE2P6 PARP4 RNF17 LOC101927375
GH13G024624 1.1 Ensembl ENCODE 14.7 +217.9 217888 2.7 HDAC1 RAD21 TCF12 ZNF766 ZNF143 ETV6 ZNF263 CAVIN1 CEBPB HDAC8 TPTE2P6 ATP12A PARP4 RNF17 GC13P024570
GH13G024617 1 Ensembl ENCODE 11.3 +210.8 210834 2.3 CTCF MAX ZNF7 POLR2A ETV6 MAFK CREM ZNF263 HLF BHLHE40 TPTE2P6 GC13P024570 ATP12A
GH13G024580 0.6 Ensembl 18.3 +172.6 172580 0.9 CTCF ZNF654 TRIM22 ZNF143 RAD21 FOXA1 TPTE2P6 GC13P024570 ATP12A
GH13G024629 1 Ensembl ENCODE 4.9 +222.4 222422 1.8 PKNOX1 PYGO2 IRF9 EGR1 FOS NFE2 CAVIN1 NR4A1 TEAD2 PTTG1 ATP12A PARP4 TPTE2P6 GC13P024570
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPTE2P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPTE2P6 Gene

Chromosome:
13
Start:
24,408,157 bp from pter
End:
24,597,676 bp from pter
Size:
189,520 bases
Orientation:
Plus strand

Genomic View for TPTE2P6 Gene

Genes around TPTE2P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPTE2P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPTE2P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTE2P6 Gene

Proteins for TPTE2P6 Gene

Post-translational modifications for TPTE2P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTE2P6 Gene

Domains & Families for TPTE2P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPTE2P6 Gene

Function for TPTE2P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPTE2P6 Gene

Localization for TPTE2P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPTE2P6 Gene

Pathways & Interactions for TPTE2P6 Gene

SuperPathways for TPTE2P6 Gene

No Data Available

Interacting Proteins for TPTE2P6 Gene

Gene Ontology (GO) - Biological Process for TPTE2P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPTE2P6 Gene

Drugs & Compounds for TPTE2P6 Gene

No Compound Related Data Available

Transcripts for TPTE2P6 Gene

mRNA/cDNA for TPTE2P6 Gene

(4) Additional mRNA sequences :
(16) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPTE2P6 Gene

Transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPTE2P6 Gene

No ASD Table

Relevant External Links for TPTE2P6 Gene

GeneLoc Exon Structure for
TPTE2P6
ECgene alternative splicing isoforms for
TPTE2P6

Expression for TPTE2P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPTE2P6 Gene

mRNA differential expression in normal tissues according to GTEx for TPTE2P6 Gene

This gene is overexpressed in Testis (x23.0).

NURSA nuclear receptor signaling pathways regulating expression of TPTE2P6 Gene:

TPTE2P6

SOURCE GeneReport for Unigene cluster for TPTE2P6 Gene:

Hs.406779
genes like me logo Genes that share expression patterns with TPTE2P6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPTE2P6 Gene

Orthologs for TPTE2P6 Gene

Evolution for TPTE2P6 Gene

ENSEMBL:
Gene Tree for TPTE2P6 (if available)
TreeFam:
Gene Tree for TPTE2P6 (if available)

No data available for Orthologs for TPTE2P6 Gene

Paralogs for TPTE2P6 Gene

No data available for Paralogs for TPTE2P6 Gene

Variants for TPTE2P6 Gene

Sequence variations from dbSNP and Humsavar for TPTE2P6 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000040514 -- 24,579,085(+) ATGGT(C/T)TCGAT upstream-variant-2KB
rs1000220633 -- 24,589,608(+) CAAAT(A/G)CTGAG intron-variant
rs1000430864 -- 24,585,028(+) AATTC(C/T)GAAAT intron-variant
rs1000483224 -- 24,585,541(+) CTTGC(-/T)TTTTT intron-variant
rs1000607477 -- 24,593,874(+) CTCTA(C/T)TAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPTE2P6 Gene

Variant ID Type Subtype PubMed ID
esv23860 CNV loss 19812545
esv2678880 CNV deletion 23128226
esv2751139 CNV gain 17911159
esv2761200 CNV gain+loss 21179565
esv3631560 CNV loss 21293372
esv3631561 CNV loss 21293372
esv3631562 CNV gain 21293372
nsv1116459 OTHER inversion 24896259
nsv1153497 OTHER inversion 26484159
nsv433523 CNV loss 18776910
nsv436164 CNV deletion 17901297
nsv561344 CNV gain 21841781
nsv832568 CNV gain 17160897
nsv963 CNV deletion 18451855
nsv974062 CNV duplication 23825009

Relevant External Links for TPTE2P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPTE2P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPTE2P6 Gene

Disorders for TPTE2P6 Gene

Relevant External Links for TPTE2P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPTE2P6

No disorders were found for TPTE2P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPTE2P6 Gene

Publications for TPTE2P6 Gene

  1. Predicting which children are at risk for ependymoma relapse. (PMID: 16575538) Sowar K. … Foreman N.K. (J. Neurooncol. 2006) 22 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TPTE2P6 Gene

Sources for TPTE2P6 Gene

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