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Aliases for TPTE2P5 Gene

Aliases for TPTE2P5 Gene

  • Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 5 2 3 5

External Ids for TPTE2P5 Gene

Previous GeneCards Identifiers for TPTE2P5 Gene

  • GC00U933134
  • GC13M041397

Summaries for TPTE2P5 Gene

GeneCards Summary for TPTE2P5 Gene

TPTE2P5 (Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPTE2P5 Gene

Genomics for TPTE2P5 Gene

Regulatory Elements for TPTE2P5 Gene

Enhancers for TPTE2P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F040894 0.7 ENCODE 13.3 +25.9 25901 2.8 SOX13 ELF3 TBP DRAP1 TFAP4 SAP130 CEBPG RARA TEAD3 FOXK2 SUGT1P3 TPTE2P5 MRPS31 GC13P040904 PIR47174
GH13F041056 0.9 Ensembl ENCODE 12 -139.5 -139543 9.7 CREB3L1 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 LINC00548 WBP4 TPTE2P5 MTRF1 NAA16 RNU6-57P CYCSP34 ELF1
GH13F040584 0.9 Ensembl ENCODE 12 +333.4 333379 7.3 PKNOX1 TBL1XR1 ARID4B BMI1 RAD21 CBX5 ETV6 JUNB TBX21 SMARCA4 TPTE2P5 FOXO1 SLC25A15 WBP4 RLIMP1 GC13P040543
GH13F040572 0.8 Ensembl 12 +348.2 348150 2.0 CBX3 ARNT INSM2 KLF17 GLI4 ZNF2 CHAMP1 ZNF121 ZNF416 ZNF391 LINC00548 TPTE2P5 FOXO1 WBP4 GC13P040543 RLIMP1
GH13F041456 0.5 ENCODE 11.9 -540.3 -540250 10.9 HDGF ARNT CREB3L1 SIN3A ZNF2 ZNF766 CBX5 ZNF143 ZNF207 FOS TPTE2P5 RGCC GC13P041459 GC13P041458 LOC105370174
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TPTE2P5 on UCSC Golden Path with GeneCards custom track

Promoters for TPTE2P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000514897 50 2201 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 GLIS2 ZNF143

Genomic Location for TPTE2P5 Gene

Chromosome:
13
Start:
40,796,985 bp from pter
End:
40,921,750 bp from pter
Size:
124,766 bases
Orientation:
Minus strand

Genomic View for TPTE2P5 Gene

Genes around TPTE2P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPTE2P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPTE2P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTE2P5 Gene

Proteins for TPTE2P5 Gene

Post-translational modifications for TPTE2P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTE2P5 Gene

Domains & Families for TPTE2P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPTE2P5 Gene

Function for TPTE2P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPTE2P5 Gene

Localization for TPTE2P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPTE2P5 Gene

Pathways & Interactions for TPTE2P5 Gene

SuperPathways for TPTE2P5 Gene

No Data Available

Interacting Proteins for TPTE2P5 Gene

Gene Ontology (GO) - Biological Process for TPTE2P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPTE2P5 Gene

Transcripts for TPTE2P5 Gene

mRNA/cDNA for TPTE2P5 Gene

(8) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPTE2P5 Gene

Transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPTE2P5 Gene

No ASD Table

Relevant External Links for TPTE2P5 Gene

GeneLoc Exon Structure for
TPTE2P5
ECgene alternative splicing isoforms for
TPTE2P5

Expression for TPTE2P5 Gene

mRNA expression in normal human tissues for TPTE2P5 Gene

mRNA differential expression in normal tissues according to GTEx for TPTE2P5 Gene

This gene is overexpressed in Thyroid (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of TPTE2P5 Gene:

TPTE2P5

SOURCE GeneReport for Unigene cluster for TPTE2P5 Gene:

Hs.660718
genes like me logo Genes that share expression patterns with TPTE2P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPTE2P5 Gene

Orthologs for TPTE2P5 Gene

Evolution for TPTE2P5 Gene

ENSEMBL:
Gene Tree for TPTE2P5 (if available)
TreeFam:
Gene Tree for TPTE2P5 (if available)

No data available for Orthologs for TPTE2P5 Gene

Paralogs for TPTE2P5 Gene

No data available for Paralogs for TPTE2P5 Gene

Variants for TPTE2P5 Gene

Sequence variations from dbSNP and Humsavar for TPTE2P5 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs104894424 Pathogenic 40,807,379(+) TTCGA(A/G)AAGTA intron-variant, reference, missense
rs104894429 Pathogenic 40,807,376(+) TACTT(C/T)GAGAA intron-variant, reference, stop-gained
rs104894430 Pathogenic 40,799,080(+) TGACC(A/G)GGCAG nc-transcript-variant, reference, missense
rs104894431 Pathogenic 40,809,585(+) GATTC(A/G)AGCAT intron-variant, upstream-variant-2KB, reference, missense
rs121908533 Pathogenic 40,799,111(+) GAAGA(G/T)GCAGA nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TPTE2P5 Gene

Variant ID Type Subtype PubMed ID
esv2747294 CNV deletion 23290073
esv2747295 CNV deletion 23290073
esv3892332 CNV gain 25118596
nsv1069747 CNV deletion 25765185
nsv1113561 CNV deletion 24896259
nsv1122811 CNV deletion 24896259
nsv974082 CNV duplication 23825009
nsv974083 CNV duplication 23825009

Relevant External Links for TPTE2P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPTE2P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPTE2P5 Gene

Disorders for TPTE2P5 Gene

Relevant External Links for TPTE2P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPTE2P5

No disorders were found for TPTE2P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPTE2P5 Gene

Publications for TPTE2P5 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TPTE2P5 Gene

Sources for TPTE2P5 Gene

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