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Aliases for TPTE2P5 Gene

Aliases for TPTE2P5 Gene

  • Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 5 2 3 5

External Ids for TPTE2P5 Gene

Previous GeneCards Identifiers for TPTE2P5 Gene

  • GC00U933134
  • GC13M041397

Summaries for TPTE2P5 Gene

GeneCards Summary for TPTE2P5 Gene

TPTE2P5 (Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 5) is a Pseudogene.

Additional gene information for TPTE2P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPTE2P5 Gene

Genomics for TPTE2P5 Gene

GeneHancer (GH) Regulatory Elements for TPTE2P5 Gene

Promoters and enhancers for TPTE2P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I040920 Promoter/Enhancer 1.7 Ensembl ENCODE 550.8 0.0 -8 3 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF207 SUGT1P3 TPTE2P5 NAA16 WBP4 CYCSP34 SLC25A15
GH13I041056 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 20.2 -139.5 -139543 9.7 MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC WBP4 TRE-TTC1-2 ELF1 NAA16 TPTE2P5 MTRF1 RNU6-57P CYCSP34
GH13I040661 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 11 +256.7 256735 7.2 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 IRF4 ZNF207 ZNF143 FOS FOXO1 PIR36841 NAA16 LINC00548 TPTE2P5 CYCSP34 SLC25A15 GC13P040667
GH13I041456 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.8 -540.2 -540249 10.9 HDGF ATF1 ARNT ZNF493 SIN3A IRF4 ZNF48 TCF12 ZNF766 GATA2 RGCC NAA16 TPTE2P5 GC13P041459 GC13P041458 LOC105370174
GH13I040584 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 +333.5 333539 6.9 PKNOX1 FOXA2 ARID4B BMI1 BATF IRF4 RAD21 ATF7 ETV6 BCLAF1 TPTE2P5 FOXO1 COG6 SLC25A15 WBP4 RLIMP1 GC13P040543
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPTE2P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPTE2P5 Gene

Genomic Locations for TPTE2P5 Gene
chr13:40,796,985-40,921,750
(GRCh38/hg38)
Size:
124,766 bases
Orientation:
Minus strand
chr13:41,371,121-41,495,890
(GRCh37/hg19)

Genomic View for TPTE2P5 Gene

Genes around TPTE2P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPTE2P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPTE2P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTE2P5 Gene

Proteins for TPTE2P5 Gene

Post-translational modifications for TPTE2P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTE2P5 Gene

Domains & Families for TPTE2P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPTE2P5 Gene

Function for TPTE2P5 Gene

Phenotypes From GWAS Catalog for TPTE2P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPTE2P5 Gene

Localization for TPTE2P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPTE2P5 Gene

Pathways & Interactions for TPTE2P5 Gene

SuperPathways for TPTE2P5 Gene

No Data Available

Interacting Proteins for TPTE2P5 Gene

Gene Ontology (GO) - Biological Process for TPTE2P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPTE2P5 Gene

Drugs & Compounds for TPTE2P5 Gene

No Compound Related Data Available

Transcripts for TPTE2P5 Gene

mRNA/cDNA for TPTE2P5 Gene

(8) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPTE2P5 Gene

Transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPTE2P5 Gene

No ASD Table

Relevant External Links for TPTE2P5 Gene

GeneLoc Exon Structure for
TPTE2P5
ECgene alternative splicing isoforms for
TPTE2P5

Expression for TPTE2P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPTE2P5 Gene

mRNA differential expression in normal tissues according to GTEx for TPTE2P5 Gene

This gene is overexpressed in Thyroid (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of TPTE2P5 Gene:

TPTE2P5

SOURCE GeneReport for Unigene cluster for TPTE2P5 Gene:

Hs.660718
genes like me logo Genes that share expression patterns with TPTE2P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPTE2P5 Gene

Orthologs for TPTE2P5 Gene

Evolution for TPTE2P5 Gene

ENSEMBL:
Gene Tree for TPTE2P5 (if available)
TreeFam:
Gene Tree for TPTE2P5 (if available)

No data available for Orthologs for TPTE2P5 Gene

Paralogs for TPTE2P5 Gene

No data available for Paralogs for TPTE2P5 Gene

Variants for TPTE2P5 Gene

Sequence variations from dbSNP and Humsavar for TPTE2P5 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs104894424 pathogenic, Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome, not provided 40,807,379(-) G/A intron_variant
rs104894429 pathogenic, Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome 40,807,376(-) C/T intron_variant
rs104894430 pathogenic, Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome 40,799,080(-) G/A non_coding_transcript_variant
rs104894431 pathogenic, Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome 40,809,585(-) G/A/T intron_variant
rs111782657 likely-benign, Hyperornithinemia-hyperammonemia-homocitrullinuria syndrome 40,810,351(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TPTE2P5 Gene

Variant ID Type Subtype PubMed ID
esv2747294 CNV deletion 23290073
esv2747295 CNV deletion 23290073
esv3892332 CNV gain 25118596
nsv1069747 CNV deletion 25765185
nsv1113561 CNV deletion 24896259
nsv1122811 CNV deletion 24896259
nsv974082 CNV duplication 23825009
nsv974083 CNV duplication 23825009

Additional Variant Information for TPTE2P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPTE2P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPTE2P5 Gene

Disorders for TPTE2P5 Gene

Additional Disease Information for TPTE2P5

No disorders were found for TPTE2P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPTE2P5 Gene

Publications for TPTE2P5 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TPTE2P5 Gene

Sources for TPTE2P5 Gene

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