Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TPTE2P3 Gene

Aliases for TPTE2P3 Gene

  • Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 3 2 3 5
  • TPTE And PTEN Homologous Inositol Lipid Phosphatase Pseudogene 3
  • TPTEps1 3

External Ids for TPTE2P3 Gene

Previous GeneCards Identifiers for TPTE2P3 Gene

  • GC13P053065
  • GC13P033801

Summaries for TPTE2P3 Gene

GeneCards Summary for TPTE2P3 Gene

TPTE2P3 (Transmembrane Phosphoinositide 3-Phosphatase And Tensin Homolog 2 Pseudogene 3) is a Pseudogene.

Additional gene information for TPTE2P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPTE2P3 Gene

Genomics for TPTE2P3 Gene

GeneHancer (GH) Regulatory Elements for TPTE2P3 Gene

Promoters and enhancers for TPTE2P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I052347 Enhancer 1.2 FANTOM5 Ensembl ENCODE 6.7 -140.3 -140321 3 PKNOX1 KLF17 BATF IRF4 ZEB1 ZNF121 ZNF366 ZSCAN5C SCRT2 FOS LOC105370207 TPTE2P2 ENSG00000244471 TPTE2P3 CKAP2 THSD1 GC13P052401
GH13I052210 Enhancer 0.7 ENCODE 7.4 -277.6 -277579 1.4 SMARCE1 NCOA3 PKNOX1 CLOCK SIN3A DPF2 MNT ZNF217 CTBP1 JUND CKAP2 TPTE2P2 CCDC70 TPTE2P3 ENSG00000244471 PIR51896 MRPS31P5 ENSG00000217576
GH13I052514 Enhancer 0.7 Ensembl 0.3 +25.2 25208 0.4 MEIS2 CHAMP1 ZNF316 BRD9 NFE2 ATF7 TRIM24 ZNF362 SOX6 L3MBTL2 ENSG00000280296 TPTE2P3 PIR31837
GH13I052569 Enhancer 0.4 Ensembl 0.2 +81.3 81286 0.6 CTCF ZNF654 RAD21 PIR31837 LINC00345 ENSG00000280296 TPTE2P3
GH13I052509 Enhancer 0.2 ENCODE 0.3 +21.6 21562 1.3 CKAP2 ENSG00000280296 TPTE2P3 PIR31837
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPTE2P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPTE2P3 Gene

Genomic Locations for TPTE2P3 Gene
chr13:52,488,993-52,587,090
(GRCh38/hg38)
Size:
98,098 bases
Orientation:
Plus strand
chr13:53,063,128-53,161,225
(GRCh37/hg19)

Genomic View for TPTE2P3 Gene

Genes around TPTE2P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPTE2P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPTE2P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPTE2P3 Gene

Proteins for TPTE2P3 Gene

Post-translational modifications for TPTE2P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPTE2P3 Gene

Domains & Families for TPTE2P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPTE2P3 Gene

Function for TPTE2P3 Gene

Phenotypes for TPTE2P3 Gene

GenomeRNAi human phenotypes for TPTE2P3:
genes like me logo Genes that share phenotypes with TPTE2P3: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPTE2P3 Gene

Localization for TPTE2P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPTE2P3 Gene

Pathways & Interactions for TPTE2P3 Gene

SuperPathways for TPTE2P3 Gene

No Data Available

Interacting Proteins for TPTE2P3 Gene

Gene Ontology (GO) - Biological Process for TPTE2P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPTE2P3 Gene

Drugs & Compounds for TPTE2P3 Gene

No Compound Related Data Available

Transcripts for TPTE2P3 Gene

mRNA/cDNA for TPTE2P3 Gene

(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPTE2P3 Gene

Transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPTE2P3 Gene

No ASD Table

Relevant External Links for TPTE2P3 Gene

GeneLoc Exon Structure for
TPTE2P3
ECgene alternative splicing isoforms for
TPTE2P3

Expression for TPTE2P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPTE2P3 Gene

mRNA differential expression in normal tissues according to GTEx for TPTE2P3 Gene

This gene is overexpressed in Testis (x22.3).

NURSA nuclear receptor signaling pathways regulating expression of TPTE2P3 Gene:

TPTE2P3

SOURCE GeneReport for Unigene cluster for TPTE2P3 Gene:

Hs.528448
genes like me logo Genes that share expression patterns with TPTE2P3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPTE2P3 Gene

Orthologs for TPTE2P3 Gene

Evolution for TPTE2P3 Gene

ENSEMBL:
Gene Tree for TPTE2P3 (if available)
TreeFam:
Gene Tree for TPTE2P3 (if available)

No data available for Orthologs for TPTE2P3 Gene

Paralogs for TPTE2P3 Gene

No data available for Paralogs for TPTE2P3 Gene

Variants for TPTE2P3 Gene

Sequence variations from dbSNP and Humsavar for TPTE2P3 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000042052 -- 52,519,173(+) A/T intron_variant
rs1000098303 -- 52,580,451(+) C/G intron_variant
rs1000239982 -- 52,556,449(+) G/A intron_variant
rs1000260272 -- 52,487,280(+) A/G upstream_transcript_variant
rs1000289176 -- 52,532,645(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TPTE2P3 Gene

Variant ID Type Subtype PubMed ID
dgv1653n100 CNV gain 25217958
dgv353e199 CNV deletion 23128226
esv21819 CNV gain 19812545
esv22786 CNV loss 19812545
esv2421964 CNV deletion 20811451
esv2665837 CNV deletion 23128226
esv2760295 CNV loss 21179565
esv2761790 CNV loss 21179565
esv3632095 CNV loss 21293372
esv3632096 CNV gain 21293372
esv3632098 CNV loss 21293372
esv3632099 CNV gain 21293372
esv3632101 CNV loss 21293372
esv3632102 CNV loss 21293372
esv3892344 CNV loss 25118596
esv3892345 CNV gain 25118596
nsv1038132 CNV loss 25217958
nsv1044 CNV insertion 18451855
nsv1044949 CNV gain 25217958
nsv1110855 OTHER inversion 24896259
nsv1118266 CNV deletion 24896259
nsv1118267 CNV deletion 24896259
nsv1118268 CNV deletion 24896259
nsv1126343 CNV deletion 24896259
nsv1126344 CNV deletion 24896259
nsv1139585 CNV duplication 24896259
nsv1143591 CNV deletion 24896259
nsv1143592 CNV deletion 24896259
nsv1143594 CNV deletion 24896259
nsv1143730 CNV deletion 24896259
nsv1143731 CNV deletion 24896259
nsv428288 CNV loss 18775914
nsv442670 CNV loss 18776908
nsv7242 OTHER inversion 18451855
nsv819201 CNV gain 19587683
nsv820041 CNV gain 19587683
nsv821105 CNV deletion 20802225
nsv976118 CNV duplication 23825009
nsv977245 CNV duplication 23825009

Additional Variant Information for TPTE2P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPTE2P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPTE2P3 Gene

Disorders for TPTE2P3 Gene

Additional Disease Information for TPTE2P3

No disorders were found for TPTE2P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPTE2P3 Gene

Publications for TPTE2P3 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. The murine orthologue of the Golgi-localized TPTE protein provides clues to the evolutionary history of the human TPTE gene family. (PMID: 11810268) Guipponi M … Antonarakis SE (Human genetics 2001) 3 58

Products for TPTE2P3 Gene

Sources for TPTE2P3 Gene

Content
Loading form....