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Aliases for TPT1-AS1 Gene

Subcategory (RNA class) for TPT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TPT1-AS1 Gene

  • TPT1 Antisense RNA 1 2 3 5
  • TPT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TPT1-AS1 Gene

Previous GeneCards Identifiers for TPT1-AS1 Gene

  • GC13P045917
  • GC13P045926

Summaries for TPT1-AS1 Gene

GeneCards Summary for TPT1-AS1 Gene

TPT1-AS1 (TPT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPT1-AS1 Gene

Genomics for TPT1-AS1 Gene

Regulatory Elements for TPT1-AS1 Gene

Enhancers for TPT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F045372 1.1 Ensembl ENCODE 45.6 +31.8 31750 1.6 INSM2 FEZF1 ZNF2 ZNF391 ZNF202 ZNF362 ZNF280D OVOL3 ZEB2 TSHZ1 TPT1-AS1 SLC25A30 TPT1 SLC25A30-AS1 GC13P045378 GC13P045379 GC13P045380 PIR60049 ENSG00000228886
GH13F045324 1.4 Ensembl ENCODE 23 -7.4 -7417 18.2 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS TPT1-AS1 SLC25A30 PPIAP25 LOC105370188 ENSG00000225727 SLC25A30-AS1 ENSG00000253051 GC13P045300
GH13F045319 1 Ensembl ENCODE 25.4 -20.4 -20445 2.6 PKNOX1 MAX ZIC2 ZNF366 SCRT2 ETV6 FOS SCRT1 MTA2 BHLHE40 TPT1-AS1 KCTD4 SLC25A30 ENSG00000253051 GC13P045300
GH13F045366 1.5 FANTOM5 Ensembl ENCODE 9.6 +26.8 26790 2.7 HDGF INSM2 KLF17 EGR1 ZNF366 SCRT2 ZNF143 RCOR1 FOS CREM SLC25A30 TPT1-AS1 COG3 TPT1 GC13P045378 GC13P045379 GC13P045380 PIR60049 ENSG00000228886
GH13F045463 1.1 ENCODE 12.4 +123.8 123775 2.9 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 KLF13 SP3 RN7SL49P COG3 TPT1-AS1 GC13M045553
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPT1-AS1 Gene

45,341,345 bp from pter
45,393,413 bp from pter
52,069 bases
Plus strand

Genomic View for TPT1-AS1 Gene

Genes around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPT1-AS1 Gene

Proteins for TPT1-AS1 Gene

Post-translational modifications for TPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPT1-AS1 Gene

Domains & Families for TPT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPT1-AS1 Gene

Function for TPT1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPT1-AS1 Gene

Localization for TPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPT1-AS1 Gene

Pathways & Interactions for TPT1-AS1 Gene

SuperPathways for TPT1-AS1 Gene

No Data Available

Interacting Proteins for TPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPT1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TPT1-AS1 Gene

Transcripts for TPT1-AS1 Gene

mRNA/cDNA for TPT1-AS1 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPT1-AS1 Gene

TPT1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPT1-AS1 Gene

No ASD Table

Relevant External Links for TPT1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TPT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TPT1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TPT1-AS1 Gene:

genes like me logo Genes that share expression patterns with TPT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPT1-AS1 Gene

Orthologs for TPT1-AS1 Gene

Evolution for TPT1-AS1 Gene

Gene Tree for TPT1-AS1 (if available)
Gene Tree for TPT1-AS1 (if available)

No data available for Orthologs for TPT1-AS1 Gene

Paralogs for TPT1-AS1 Gene

No data available for Paralogs for TPT1-AS1 Gene

Variants for TPT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPT1-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10161660 -- 45,376,795(+) taaaa(G/T)tccag intron-variant
rs10161965 -- 45,383,345(+) tttgc(C/G)caaga intron-variant
rs10162203 -- 45,378,474(+) atgaa(C/G)agtct intron-variant
rs10548513 -- 45,349,826(+) CCCTC(-/TT)GTTTT intron-variant
rs1058093 -- 45,339,558(-) AAAAC(C/T)TTTTA upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TPT1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv977235 CNV duplication 23825009
nsv977234 CNV duplication 23825009
nsv951079 CNV deletion 24416366
nsv510579 CNV deletion 20534489
nsv1143589 CNV deletion 24896259
nsv1071098 CNV deletion 25765185
nsv1046200 CNV gain 25217958
nsv1023 CNV insertion 18451855
esv3631956 CNV loss 21293372
esv3631955 CNV loss 21293372
esv3631954 CNV gain 21293372
esv3631953 CNV loss 21293372
esv3631952 CNV loss 21293372
esv3631951 CNV loss 21293372
esv3580625 CNV loss 25503493
esv3550406 CNV deletion 23714750
esv3550405 CNV deletion 23714750
esv3403190 CNV duplication 20981092
esv3400068 CNV duplication 20981092
esv3334636 CNV duplication 20981092
esv29553 CNV gain 19812545
esv2747346 CNV deletion 23290073
esv2747345 CNV deletion 23290073
esv2677094 CNV deletion 23128226
esv2662623 CNV deletion 23128226
esv2662251 CNV deletion 23128226
esv2200003 CNV deletion 18987734
esv1002945 CNV deletion 20482838
dgv223e201 CNV deletion 23290073
dgv222e201 CNV deletion 23290073

Relevant External Links for TPT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPT1-AS1 Gene

Disorders for TPT1-AS1 Gene

Relevant External Links for TPT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TPT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPT1-AS1 Gene

Publications for TPT1-AS1 Gene

  1. LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas. (PMID: 27764782) Wang W. … Zhao J. (Oncotarget 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TPT1-AS1 Gene

Sources for TPT1-AS1 Gene

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