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Aliases for TPT1-AS1 Gene

Subcategory (RNA class) for TPT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TPT1-AS1 Gene

  • TPT1 Antisense RNA 1 2 3 5
  • TPT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TPT1-AS1 Gene

Previous GeneCards Identifiers for TPT1-AS1 Gene

  • GC13P045917
  • GC13P045926

Summaries for TPT1-AS1 Gene

GeneCards Summary for TPT1-AS1 Gene

TPT1-AS1 (TPT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPT1-AS1 Gene

Genomics for TPT1-AS1 Gene

Regulatory Elements for TPT1-AS1 Gene

Promoters for TPT1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPT1-AS1 Gene

Chromosome:
13
Start:
45,341,345 bp from pter
End:
45,393,413 bp from pter
Size:
52,069 bases
Orientation:
Plus strand

Genomic View for TPT1-AS1 Gene

Genes around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPT1-AS1 Gene

Proteins for TPT1-AS1 Gene

Post-translational modifications for TPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPT1-AS1 Gene

Domains & Families for TPT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPT1-AS1 Gene

Function for TPT1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPT1-AS1 Gene

Localization for TPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPT1-AS1 Gene

Pathways & Interactions for TPT1-AS1 Gene

SuperPathways for TPT1-AS1 Gene

No Data Available

Interacting Proteins for TPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPT1-AS1 Gene

Drugs & Compounds for TPT1-AS1 Gene

No Compound Related Data Available

Transcripts for TPT1-AS1 Gene

mRNA/cDNA for TPT1-AS1 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPT1-AS1 Gene

TPT1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPT1-AS1 Gene

No ASD Table

Relevant External Links for TPT1-AS1 Gene

GeneLoc Exon Structure for
TPT1-AS1
ECgene alternative splicing isoforms for
TPT1-AS1

Expression for TPT1-AS1 Gene

mRNA expression in normal human tissues for TPT1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TPT1-AS1 Gene Hs.375766

genes like me logo Genes that share expression patterns with TPT1-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TPT1-AS1 Gene

Orthologs for TPT1-AS1 Gene

Evolution for TPT1-AS1 Gene

ENSEMBL:
Gene Tree for TPT1-AS1 (if available)
TreeFam:
Gene Tree for TPT1-AS1 (if available)

No data available for Orthologs for TPT1-AS1 Gene

Paralogs for TPT1-AS1 Gene

No data available for Paralogs for TPT1-AS1 Gene

Variants for TPT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPT1-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1138391 -- 45,391,410(+) TGGGG(A/G)CTCGG nc-transcript-variant
rs727799 -- 45,344,383(-) tcgct(C/T)gaacc nc-transcript-variant
rs1061137 -- 45,391,063(+) GCCAT(A/C)CCCAT nc-transcript-variant
rs1061143 -- 45,391,129(+) GAGCT(C/G/T)GTCGA nc-transcript-variant
rs1061183 -- 45,391,362(+) GGCCG(A/G)GAGGG nc-transcript-variant

Relevant External Links for TPT1-AS1 Gene

HapMap Linkage Disequilibrium report
TPT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPT1-AS1 Gene

Disorders for TPT1-AS1 Gene

Relevant External Links for TPT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPT1-AS1

No disorders were found for TPT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPT1-AS1 Gene

Publications for TPT1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 67

Products for TPT1-AS1 Gene

Sources for TPT1-AS1 Gene

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