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Aliases for TPT1-AS1 Gene

Subcategory (RNA class) for TPT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TPT1-AS1 Gene

  • TPT1 Antisense RNA 1 2 3 5
  • TPT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TPT1-AS1 Gene

Previous GeneCards Identifiers for TPT1-AS1 Gene

  • GC13P045917
  • GC13P045926

Summaries for TPT1-AS1 Gene

GeneCards Summary for TPT1-AS1 Gene

TPT1-AS1 (TPT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPT1-AS1 Gene

Genomics for TPT1-AS1 Gene

Regulatory Elements for TPT1-AS1 Gene

Enhancers for TPT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G045372 0.9 ENCODE 45.6 +31.8 31750 1.6 INSM2 FEZF1 ZNF2 ZSCAN5C ZNF391 ZNF202 ZNF280D ZNF362 OVOL3 TSHZ1 TPT1-AS1 SLC25A30 TPT1 SLC25A30-AS1 GC13P045378 GC13P045379 GC13P045380 PIR60049 ENSG00000228886
GH13G045338 1.1 ENCODE 23.4 -0.6 -576 4.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS SP3 TPT1-AS1 SLC25A30 SLC25A30-AS1 ENSG00000273149 GC13M045342 GC13M045341
GH13G045319 1 Ensembl ENCODE 21.9 -21.2 -21189 0.5 SCRT1 PKNOX1 MTA2 BHLHE40 TRIM22 DPF2 ZIC2 TBX21 ZNF366 IKZF1 TPT1-AS1 KCTD4 ENSG00000253051 GC13P045300
GH13G045463 1.4 ENCODE dbSUPER 12.4 +123.8 123775 2.9 PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 RN7SL49P TPT1-AS1 COG3 GC13M045553
GH13G045324 1.3 Ensembl ENCODE 13 -10.7 -10652 11.8 PKNOX1 ATF1 SIN3A FEZF1 ZNF2 YY1 ZNF121 GLIS2 GATA2 FOS SLC25A30 TPT1-AS1 SLC25A30-AS1 ENSG00000253051 GC13P045300
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TPT1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000062295 -345 2801 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS SP3

Genomic Location for TPT1-AS1 Gene

Chromosome:
13
Start:
45,341,345 bp from pter
End:
45,393,413 bp from pter
Size:
52,069 bases
Orientation:
Plus strand

Genomic View for TPT1-AS1 Gene

Genes around TPT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPT1-AS1 Gene

Proteins for TPT1-AS1 Gene

Post-translational modifications for TPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPT1-AS1 Gene

Domains & Families for TPT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPT1-AS1 Gene

Function for TPT1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPT1-AS1 Gene

Localization for TPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPT1-AS1 Gene

Pathways & Interactions for TPT1-AS1 Gene

SuperPathways for TPT1-AS1 Gene

No Data Available

Interacting Proteins for TPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPT1-AS1 Gene

Drugs & Compounds for TPT1-AS1 Gene

No Compound Related Data Available

Transcripts for TPT1-AS1 Gene

mRNA/cDNA for TPT1-AS1 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPT1-AS1 Gene

TPT1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPT1-AS1 Gene

No ASD Table

Relevant External Links for TPT1-AS1 Gene

GeneLoc Exon Structure for
TPT1-AS1
ECgene alternative splicing isoforms for
TPT1-AS1

Expression for TPT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPT1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TPT1-AS1 Gene:

Hs.375766
genes like me logo Genes that share expression patterns with TPT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPT1-AS1 Gene

Orthologs for TPT1-AS1 Gene

Evolution for TPT1-AS1 Gene

ENSEMBL:
Gene Tree for TPT1-AS1 (if available)
TreeFam:
Gene Tree for TPT1-AS1 (if available)

No data available for Orthologs for TPT1-AS1 Gene

Paralogs for TPT1-AS1 Gene

No data available for Paralogs for TPT1-AS1 Gene

Variants for TPT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPT1-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000018869 -- 45,368,601(+) TCTCA(C/T)GTCTC intron-variant
rs1000071759 -- 45,346,139(+) CAGAC(A/G)CGTGC intron-variant
rs1000135196 -- 45,362,712(+) TCTAG(A/G)ATAGT intron-variant
rs1000269515 -- 45,374,729(+) TGCAC(A/G)CTGGG intron-variant
rs1000322959 -- 45,349,331(+) GCTGT(C/T)TGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv222e201 CNV deletion 23290073
dgv223e201 CNV deletion 23290073
esv1002945 CNV deletion 20482838
esv2200003 CNV deletion 18987734
esv2662251 CNV deletion 23128226
esv2662623 CNV deletion 23128226
esv2677094 CNV deletion 23128226
esv2747345 CNV deletion 23290073
esv2747346 CNV deletion 23290073
esv29553 CNV gain 19812545
esv3334636 CNV duplication 20981092
esv3400068 CNV duplication 20981092
esv3403190 CNV duplication 20981092
esv3550405 CNV deletion 23714750
esv3550406 CNV deletion 23714750
esv3580625 CNV loss 25503493
esv3631951 CNV loss 21293372
esv3631952 CNV loss 21293372
esv3631953 CNV loss 21293372
esv3631954 CNV gain 21293372
esv3631955 CNV loss 21293372
esv3631956 CNV loss 21293372
nsv1023 CNV insertion 18451855
nsv1046200 CNV gain 25217958
nsv1071098 CNV deletion 25765185
nsv1143589 CNV deletion 24896259
nsv510579 CNV deletion 20534489
nsv951079 CNV deletion 24416366
nsv977234 CNV duplication 23825009
nsv977235 CNV duplication 23825009

Relevant External Links for TPT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPT1-AS1 Gene

Disorders for TPT1-AS1 Gene

Relevant External Links for TPT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPT1-AS1

No disorders were found for TPT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPT1-AS1 Gene

Publications for TPT1-AS1 Gene

  1. LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas. (PMID: 27764782) Wang W. … Zhao J. (Oncotarget 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TPT1-AS1 Gene

Sources for TPT1-AS1 Gene

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