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Aliases & Descriptions for TPT1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ27337 2 | | Fortilin 3 | | HRF 2, 3, 5 | | OTTHUMP00000018344 2 | | TCTP 1, 2, 3 | | fortilin 1, 2 | | p02 2 | | p23 3 |
| | | Descriptions |
|---|
| Histamine-releasing factor 2, 3 | | tumor protein, translationally-controlled 1 2 |
|
| | Search outside databases for aliases for TPT1 genePrevious GC identifers: GC13M043911 GC13M039897 GC13M044847 GC13M043709 GC13M044810 GC13M044673 GC13M044815 GC13M044818 GC13M044821 GC13M044824 GC13M044827 |
Summaries for TPT1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: TCTP_HUMAN, P13693Function: Involved in calcium binding and microtubule stabilizationGene Wiki entry for TPT1 |
Genomic Location for TPT1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TPT1 gene 
Entrez Gene cytogenetic band: 13q12-q14 Ensembl cytogenetic band: 13q14.12 HGNC cytogenetic band: 13q14TPT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13M044830:
(about GC identifiers)
Start:
|
44,809,008 bp from pter |
End:
|
44,813,347 bp from pter |
Size:
|
4,340 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000013.9 NT_024524.13
| Proteins for TPT1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TCTP_HUMAN, P13693 (See
protein sequence)Recommended Name: Translationally-controlled tumor protein Size: 172 amino acids; 19595 Da
Subunit: Interacts with STEAP3
Subcellular location: Cytoplasm
PDB structure from and Proteopedia :1YZ1 (3D)
 2HR9 (3D)
 
Secondary accessions: Q6YLS2 Q7Z4J4 Q96EE2 Q9UC70Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003286.1
ENSEMBL proteins: ENSP00000339051 ENSP00000368344 ENSP00000368350 ENSP00000368345
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: TPT1 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TPT1: Assays for TPT1: | Protein
Domains/ Families for TPT1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P13693
ProtoNet protein and cluster: P13693 1 Blocks protein family: IPB001983 Translationally controlled tumor protein
UniProtKB/Swiss-Prot: TCTP_HUMAN, P13693Similarity: Belongs to the TCTP family | Gene Function for TPT1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC022436
Applied Biosystems Silencer® siRNAs for TPT1
Sigma-Aldrich siRNA for TPT1  Sigma-Aldrich shRNA for TPT1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003295                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003295                                  untagged cDNA clones in CMV expression vector (see all 3): BC022436 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003295
UniProtKB/Swiss-Prot: TCTP_HUMAN, P13693Function: Involved in calcium binding and microtubule stabilizationGenatlas biochemistry entry for TPT1:tumor protein,translationally controlled 16 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Tpt1):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TPT1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for TPT1 
5/28 Interacting proteins for TPT1 (P136931, 2 ENSP000003390513) via UniProtKB, MINT, and/or STRING (see all 28
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for TPT1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TPT1 6 Novoseek chemical compound relationships for TPT1 gene
About this table
|
Transcripts for TPT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): BC022436
Sigma-Aldrich siRNA for TPT1  Sigma-Aldrich shRNA for TPT1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003295 REFSEQ mRNAs for TPT1 gene: NM_003295.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003295               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003295                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003295                                  untagged cDNA clones in CMV expression vector (see all 3): BC022436  Additional cDNA sequence: AK130847.1 AK296587.1 AK296952.1 AK312951.1 AY117678.1 AY334563.1 AY952884.2 BC003352.2 BC012431.1 BC022436.1 BC040008.1 BC052333.1 CR457036.1 CR590628.1 CR591807.1 CR596782.1 CR600220.1 CR603315.1 CR606684.1 CR607344.1 CR609479.1 CR615436.1 CR617312.1 CR618209.1 CR619808.1 CR620037.1 CR623434.1 CR624492.1 CR624864.1 CR626086.1 CR626131.1 L13806.1 X16064.1 X64899.1 24/145 DOTS entries (see all 145
): DT.91781826 DT.100733394 DT.100733431 DT.100733370 DT.91781857 DT.100733383 DT.100733424 DT.100733358 DT.87018221 DT.91781818 DT.97869274 DT.91781854 DT.100733416 DT.120768188 DT.100733395 DT.120768288 DT.95371615 DT.100733363 DT.91679216 DT.100875372 DT.100733356 DT.120768190 DT.120768345 DT.100733380 24/4717 AceView cDNA sequences (see all 4717
):BE773374 AA384881 CB111802 BG032149 CB110614 BM790901 CA950607 BM558218 BM772601 BM768449 BM686214 BG402975 BU507430 BQ788018 CA412757 BM831639 BM784550 CB164588 BU581521 BM994614 BQ948938 BE811663 BF037351 AI751451
highest scoring ESTs for TPT1:X16064 AA082090 AA091100 AA176676 AA249276 AA307370 AA308528 AA315877 AA316712 AA320747 Unigene Cluster for TPT1: Tumor protein, translationally-controlled 1 Hs.374596 [show with all ESTs]Unigene Representative Sequence: BG033621
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for TPT1 (see all 9
)
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | · | 3c | · | 3d | · | 3e | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | · | 7c | |
| SP1: | |   | - |   | |   | - |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TPT1
4 Ensembl transcripts including schematic representations: ENST00000309246
ENST00000379055
ENST00000379060
ENST00000379056
|
Expression for TPT1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TPT1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TPT1
1 / 2 / 3 13 probe-sets matching TPT1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAGGTTGTCT
SOURCE GeneReport for Unigene cluster: Hs.374596
Expression variation in blood from EXPOLDB for TPT1 UniProtKB/Swiss-Prot: TCTP_HUMAN, P13693Tissue specificity: Found in several healthy and tumoral cells including erythrocytes, hepatocytes, macrophages, platelets, keratinocytes, erythroleukemia cells, gliomas, melanomas, hepatoblastomas, and lymphomas. It cannot be detected in kidney and renal cell carcinoma (RCC). Expressed in placenta and prostate |
Orthologs for TPT1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TPT1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for TPT1
ENSEMBL Gene Tree for TPT1 | Paralogs for TPT1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Pseudogenes
- 12 related pseudogenes
|
SNPs/Variants for TPT1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TPT1 (up to first 250kb)
|
Disorders & Mutations for TPT1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600763
10/24 Novoseek disease relationships for TPT1 gene (see all 24
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| urticaria chronic |
76.28 |
3 |
8970437 (1), 17509061 (1), 16076300 (1) |
| idiopathic urticaria |
75.16 |
10 |
8970437 (5), 8842556 (2), 12877454 (1), 7687607 (1) |
| urticaria |
56.73 |
3 |
7600377 (1), 15725248 (1) |
| asthma |
50.21 |
25 |
7522854 (2), 1702128 (2), 8711735 (1), 7581067 (1) (see all 18) |
| allergic rhinitis |
47.67 |
3 |
1375820 (1), 7508179 (1), 7687607 (1) |
| allergy |
45.49 |
2 |
16491843 (1), 10200014 (1) |
| allergy drug |
42.18 |
2 |
12876410 (1), 17460952 (1) |
| bronchial hyperreactivity |
40.00 |
2 |
8814942 (1) |
| allergic reaction |
35.88 |
2 |
12487227 (2) |
| tumors |
33.10 |
85 |
15489264 (4), 10880768 (3), 18630514 (2), 9588028 (2) (see all 45) |
About this table
Human Genome Epidemiology Navigator: TPT1 (1 document)
|
Medical News for TPT1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TPT1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/169 PubMed articles for TPT1 gene (see all 169
):- cDNA sequence coding for a translationally controlled human tumor protein. (PubMed id 2813067)2, 3, 4 Gross B.... Bielka H. (1989)
- The translationally controlled tumor protein is a novel calcium binding protein of the human placenta and regulates calcium handling in trophoblast cells. (PubMed id 15958728)1, 3, 4 Arcuri F.... Cintorino M. (2005)
- Translationally controlled tumor protein (TCTP) in the human prostate and prostate cancer cells: expression, distribution, and calcium binding activity. (PubMed id 15162379)1, 3, 4 Arcuri F.... del Vecchio M.T. (2004)
- Plk phosphorylation regulates the microtubule-stabilizing protein TCTP. (PubMed id 12167714)1, 3, 4 Yarm F.R. (2002)
- Translationally controlled tumor protein: a protein identified in several nontumoral cells including erythrocytes. (PubMed id 9059837)1, 3, 4 Sanchez J.-C.... Hochstrasser D.F. (1997)
- Chromosomal localization of tumor protein, translationally-controlled 1 (TPT1) encoding the human histamine releasing factor (HRF) to 13q12-->q14. (PubMed id 10343127)1, 2, 3 MacDonald S.M....Jabs E.W. (1999)
- Molecular identification of an IgE-dependent histamine-releasing factor. (PubMed id 7542803)1, 3, 4 MacDonald S.M.... Lichtenstein L.M. (1995)
- The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)3, 4 Dunham A.... Ross M.T. (2004)
- TSAP6 facilitates the secretion of translationally controlled tumor protein/histamine-releasing factor via a nonclassical pathway. (PubMed id 15319436)3, 4 Amzallag N.... Telerman A. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
|
Search for TPT1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TPT1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TPT1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TPT1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TPT1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TPT1:

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Incremental update: 13 Oct 2009
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