Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TPRX1P1 Gene

Aliases for TPRX1P1 Gene

  • Tetrapeptide Repeat Homeobox 1 Pseudogene 1 2 3 5
  • Tetra-Peptide Repeat Homeobox 1 Pseudogene 1 3
  • Tetra-Peptide Repeat Homeobox Pseudogene 2 3
  • TPRXP2 3

External Ids for TPRX1P1 Gene

Previous GeneCards Identifiers for TPRX1P1 Gene

  • GC10U900625
  • GC10M080928
  • GC10M081258

Summaries for TPRX1P1 Gene

Entrez Gene Summary for TPRX1P1 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the TPRX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for TPRX1P1 Gene

TPRX1P1 (Tetrapeptide Repeat Homeobox 1 Pseudogene 1) is a Pseudogene.

Additional gene information for TPRX1P1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRX1P1 Gene

Genomics for TPRX1P1 Gene

GeneHancer (GH) Regulatory Elements for TPRX1P1 Gene

Promoters and enhancers for TPRX1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I079487 Enhancer 1 Ensembl ENCODE 0.4 +11.7 11687 2.2 HDAC1 PKNOX1 ATF1 RB1 ZFP64 SIN3A RAD21 ZNF143 RCOR1 FOS ENSG00000224886 MBL1P LOC642361 ENSG00000235705 TPRX1P1 LOC105378383
GH10I079489 Enhancer 0.9 Ensembl ENCODE 0.4 +9.2 9188 1.8 HDAC1 CTCF L3MBTL2 MLX MAX EBF1 MNT ZIC2 RAD21 FOSL1 ENSG00000272489 ENSG00000224886 NUTM2B-AS1 ENSG00000235705 TPRX1P1 LOC105378383
GH10I079466 Enhancer 1 Ensembl ENCODE 0.3 +32.5 32532 2.1 PKNOX1 ATF1 ZNF2 RAD21 YY1 ZNF121 ZNF766 ARID2 ZNF143 ZNF654 ENSG00000224886 ZCCHC24 ENSG00000235426 ENSG00000235705 LOC105378383 TPRX1P1
GH10I079482 Enhancer 0.7 ENCODE 0.4 +16.3 16303 2.4 PKNOX1 ZSCAN4 KLF17 ZIC2 ZFHX2 GATA3 POLR2A RCOR1 EGR2 GFI1B ENSG00000224886 ENSG00000235426 ENSG00000235705 NUTM2B TPRX1P1 LOC105378383
GH10I079449 Enhancer 0.8 ENCODE dbSUPER 0.2 +50.6 50632 0.2 SIX4 ZNF639 FOXA2 ZNF10 MAFG FEZF1 ZBTB40 FOXA1 ZNF217 MAFK LOC105378383 TPRX1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPRX1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPRX1P1 Gene

Genomic Locations for TPRX1P1 Gene
chr10:79,499,088-79,500,012
(GRCh38/hg38)
Size:
925 bases
Orientation:
Minus strand
chr10:81,258,844-81,259,768
(GRCh37/hg19)

Genomic View for TPRX1P1 Gene

Genes around TPRX1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRX1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRX1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRX1P1 Gene

Proteins for TPRX1P1 Gene

Post-translational modifications for TPRX1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRX1P1 Gene

Domains & Families for TPRX1P1 Gene

Gene Families for TPRX1P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TPRX1P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPRX1P1 Gene

Function for TPRX1P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRX1P1 Gene

Localization for TPRX1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPRX1P1 Gene

Pathways & Interactions for TPRX1P1 Gene

SuperPathways for TPRX1P1 Gene

No Data Available

Interacting Proteins for TPRX1P1 Gene

Gene Ontology (GO) - Biological Process for TPRX1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRX1P1 Gene

Drugs & Compounds for TPRX1P1 Gene

No Compound Related Data Available

Transcripts for TPRX1P1 Gene

mRNA/cDNA for TPRX1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPRX1P1 Gene

No ASD Table

Relevant External Links for TPRX1P1 Gene

GeneLoc Exon Structure for
TPRX1P1
ECgene alternative splicing isoforms for
TPRX1P1

Expression for TPRX1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPRX1P1 Gene

mRNA differential expression in normal tissues according to GTEx for TPRX1P1 Gene

This gene is overexpressed in Testis (x18.6), Brain - Frontal Cortex (BA9) (x6.2), Brain - Cortex (x6.1), Brain - Cerebellum (x5.8), and Brain - Putamen (basal ganglia) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of TPRX1P1 Gene:

TPRX1P1
genes like me logo Genes that share expression patterns with TPRX1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPRX1P1 Gene

Orthologs for TPRX1P1 Gene

Evolution for TPRX1P1 Gene

ENSEMBL:
Gene Tree for TPRX1P1 (if available)
TreeFam:
Gene Tree for TPRX1P1 (if available)

No data available for Orthologs for TPRX1P1 Gene

Paralogs for TPRX1P1 Gene

No data available for Paralogs for TPRX1P1 Gene

Variants for TPRX1P1 Gene

Additional Variant Information for TPRX1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRX1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPRX1P1 Gene

Disorders for TPRX1P1 Gene

No disorders were found for TPRX1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TPRX1P1 Gene

Publications for TPRX1P1 Gene

No publications were found for TPRX1P1 Gene.

Products for TPRX1P1 Gene

Sources for TPRX1P1 Gene

Content
Loading form....