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Aliases for TPRX1 Gene

Aliases for TPRX1 Gene

  • Tetrapeptide Repeat Homeobox 1 2 3 5
  • Tetra-Peptide Repeat Homeobox Protein 1 3
  • Tetra-Peptide Repeat Homeobox 1 3
  • CRX Like Homeobox 2 3
  • TPRX 3

External Ids for TPRX1 Gene

Previous GeneCards Identifiers for TPRX1 Gene

  • GC19M052998
  • GC19M048304
  • GC19M044730

Summaries for TPRX1 Gene

Entrez Gene Summary for TPRX1 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This gene is a member of the TPRX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for TPRX1 Gene

TPRX1 (Tetrapeptide Repeat Homeobox 1) is a Protein Coding gene. Among its related pathways are Preimplantation Embryo. GO annotations related to this gene include sequence-specific DNA binding.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRX1 Gene

Genomics for TPRX1 Gene

Regulatory Elements for TPRX1 Gene

Enhancers for TPRX1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G047813 0.7 ENCODE 0.4 +5.2 5193 0.2 CTCF PKNOX1 SAP130 RAD21 FOSL1 GATA3 CTBP1 ZBTB48 SMC3 ZNF143 TPRX1 RPL23AP80
GH19G047809 0.6 ENCODE 0.4 +9.2 9193 0.2 CEBPB RARA ZFHX2 EGR1 FOS PRDM1 EGR2 ZNF18 SP7 TPRX1 RPL23AP80
GH19G047799 0.5 FANTOM5 0.4 +20.0 19961 0.2 ZNF366 YBX1 ZBTB17 CRX SNORD23 NOP53 SULT2A1 CABP5 RPL23AP80 TPRX1
GH19G047798 0.3 FANTOM5 0.3 +20.9 20899 0.2 CABP5 CRX SNORD23 NOP53 SULT2A1 RPL23AP80 TPRX1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPRX1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPRX1 Gene

Chromosome:
19
Start:
47,801,243 bp from pter
End:
47,819,051 bp from pter
Size:
17,809 bases
Orientation:
Minus strand

Genomic View for TPRX1 Gene

Genes around TPRX1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRX1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRX1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRX1 Gene

Proteins for TPRX1 Gene

  • Protein details for TPRX1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7U7-TPRX1_HUMAN
    Recommended name:
    Tetra-peptide repeat homeobox protein 1
    Protein Accession:
    Q8N7U7
    Secondary Accessions:
    • A5D8Y3
    • B2RPL5

    Protein attributes for TPRX1 Gene

    Size:
    411 amino acids
    Molecular mass:
    40603 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TPRX1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TPRX1 Gene

Post-translational modifications for TPRX1 Gene

No Post-translational modifications

Other Protein References for TPRX1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TPRX1 Gene

Domains & Families for TPRX1 Gene

Gene Families for TPRX1 Gene

Protein Domains for TPRX1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TPRX1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TPRX1: view

No data available for UniProtKB/Swiss-Prot for TPRX1 Gene

Function for TPRX1 Gene

Gene Ontology (GO) - Molecular Function for TPRX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with TPRX1: view
genes like me logo Genes that share phenotypes with TPRX1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRX1 Gene

Localization for TPRX1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TPRX1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TPRX1 gene
Compartment Confidence
nucleus 4
mitochondrion 2
cytosol 1

Gene Ontology (GO) - Cellular Components for TPRX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TPRX1: view

Pathways & Interactions for TPRX1 Gene

SuperPathways for TPRX1 Gene

SuperPathway Contained pathways
1 Preimplantation Embryo
genes like me logo Genes that share pathways with TPRX1: view

Pathways by source for TPRX1 Gene

1 BioSystems pathway for TPRX1 Gene

Interacting Proteins for TPRX1 Gene

Selected Interacting proteins: Q8N7U7-TPRX1_HUMAN for TPRX1 Gene via IID

Symbol External ID(s) Details
CRX

Gene Ontology (GO) - Biological Process for TPRX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with TPRX1: view

No data available for SIGNOR curated interactions for TPRX1 Gene

Drugs & Compounds for TPRX1 Gene

No Compound Related Data Available

Transcripts for TPRX1 Gene

mRNA/cDNA for TPRX1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPRX1 Gene

Tetra-peptide repeat homeobox 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPRX1 Gene

No ASD Table

Relevant External Links for TPRX1 Gene

GeneLoc Exon Structure for
TPRX1
ECgene alternative splicing isoforms for
TPRX1

Expression for TPRX1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPRX1 Gene

mRNA differential expression in normal tissues according to GTEx for TPRX1 Gene

This gene is overexpressed in Testis (x42.2).

NURSA nuclear receptor signaling pathways regulating expression of TPRX1 Gene:

TPRX1

SOURCE GeneReport for Unigene cluster for TPRX1 Gene:

Hs.629812
genes like me logo Genes that share expression patterns with TPRX1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPRX1 Gene

Orthologs for TPRX1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for TPRX1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TPRX1 35
  • 76 (a)
OneToOne
Species where no ortholog for TPRX1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TPRX1 Gene

ENSEMBL:
Gene Tree for TPRX1 (if available)
TreeFam:
Gene Tree for TPRX1 (if available)

Paralogs for TPRX1 Gene

(6) SIMAP similar genes for TPRX1 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for TPRX1 Gene

genes like me logo Genes that share paralogs with TPRX1: view

No data available for Paralogs for TPRX1 Gene

Variants for TPRX1 Gene

Sequence variations from dbSNP and Humsavar for TPRX1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000777598 -- 47,801,393(+) TGGAT(A/G)TTACA utr-variant-3-prime
rs1000862751 -- 47,805,122(+) AGCTT(A/G)GTACA upstream-variant-2KB
rs1001149556 -- 47,803,036(+) CCCAG(G/T)GAGCC intron-variant
rs1002481033 -- 47,804,329(+) GGATC(A/C)CAGGC upstream-variant-2KB
rs1002815081 -- 47,803,099(+) TCCCC(A/C)ACCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPRX1 Gene

Variant ID Type Subtype PubMed ID
dgv653e199 CNV deletion 23128226
esv2718667 CNV deletion 23290073
esv3644559 CNV gain 21293372
esv3644564 CNV loss 21293372
nsv1058622 CNV gain 25217958
nsv1062085 CNV gain 25217958
nsv1066097 CNV gain 25217958
nsv1066782 CNV loss 25217958
nsv1071543 CNV deletion 25765185
nsv428367 CNV gain+loss 18775914
nsv458715 CNV gain 19166990
nsv520073 CNV gain 19592680
nsv579897 CNV gain 21841781

Variation tolerance for TPRX1 Gene

Residual Variation Intolerance Score: 81.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.48; 85.81% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TPRX1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRX1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TPRX1 Gene

Disorders for TPRX1 Gene

Relevant External Links for TPRX1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPRX1

No disorders were found for TPRX1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPRX1 Gene

Publications for TPRX1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth H.A. … Holland P.W.H. (Gene 2007) 3 64
  3. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TPRX1 Gene

Sources for TPRX1 Gene

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