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TPRG1L Gene

protein-coding   GIFtS: 47
GCID: GC01P003532

Tumor Protein P63 Regulated 1-Like

(Previous names: family with sequence similarity 79, member A)
(Previous symbol: FAM79A)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Tumor Protein P63 Regulated 1-Like1 2     h-mover2
FAM79A1 2 3     mover2
Family With Sequence Similarity 79, Member A1 2     Tumor Protein P63-Regulated Gene 1-Like Protein2
Mossy Fiber Terminal-Associated Vertebrate-Specific Presynaptic Protein2 3     MOVER3
RP11-46F15.32     Protein FAM79A3

External Ids:    HGNC: 270071   Entrez Gene: 1272622   Ensembl: ENSG000001581097   OMIM: 6114605   UniProtKB: Q5T0D93   

Export aliases for TPRG1L gene to outside databases

Previous GC identifer: GC01P002837


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TPRG1L Gene:
TPRG1L (tumor protein p63 regulated 1-like) is a protein-coding gene. GO annotations related to this gene include identical protein binding. An important paralog of this gene is TPRG1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NC_018912.2  NT_032977.10  
Regulatory elements:
   Regulatory transcription factor binding sites in the TPRG1L gene promoter:
         HOXA9   HOXA9B   p53   NRSF form 1   NRSF form 2   Meis-1b   AREB6   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTPRG1L promoter sequence
   Search Chromatin IP Primers for TPRG1L

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TPRG1L


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.32   Ensembl cytogenetic band:  1p36.32   HGNC cytogenetic band: 1p36.32

TPRG1L Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TPRG1L gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P003532:  view genomic region     (about GC identifiers)

Start:
3,541,556 bp from pter      End:
3,546,695 bp from pter
Size:
5,140 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: TPRGL_HUMAN, Q5T0D9 (See protein sequence)
Recommended Name: Tumor protein p63-regulated gene 1-like protein  
Size: 272 amino acids; 30212 Da
Subunit: Interacts with BSN (By similarity)
Secondary accessions: A8K1K4 Q8WV04
Alternative splicing: 2 isoforms:  Q5T0D9-1   Q5T0D9-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TPRG1L: NX_Q5T0D9

Explore proteomics data for TPRG1L at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See TPRG1L Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_877429.2  
    ENSEMBL proteins: 
     ENSP00000367595   ENSP00000339714  

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    antibodies-online proteins for TPRG1L (4 products) 

     
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR022158 Inositol_phosphatase

    Graphical View of Domain Structure for InterPro Entry Q5T0D9

    ProtoNet protein and cluster: Q5T0D9

    UniProtKB/Swiss-Prot: TPRGL_HUMAN, Q5T0D9
    Similarity: Belongs to the TPRG1 family


    Find genes that share domains with TPRG1L           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0042802identical protein binding IEA--
         
    Find genes that share ontologies with TPRG1L           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for TPRG1L:
     Increased gamma-H2AX phosphory 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for TPRG1L

    miRNA
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    miRTarBase miRNAs that target TPRG1L:
    hsa-mir-375 (MIRT019669), hsa-mir-183-5p (MIRT047125), hsa-mir-21-5p (MIRT030667), hsa-mir-93-3p (MIRT038824)

    Block miRNA regulation of human, mouse, rat TPRG1L using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate TPRG1L (see all 27):
    hsa-miR-623 hsa-miR-30c hsa-miR-3938 hsa-miR-106a hsa-miR-30d hsa-miR-519a hsa-miR-3133 hsa-miR-511
    SwitchGear 3'UTR luciferase reporter plasmidTPRG1L 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TPRG1L


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    TPRGL_HUMAN, Q5T0D9: Cytoplasmic vesicle, secretory vesicle, synaptic vesicle (By similarity). Note=Localized to
    presynaptic nerve terminals (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton2
    cytosol2
    nucleus1
    peroxisome1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008021synaptic vesicle ISS17869247
    GO:0030054cell junction IEA--
    GO:0070062extracellular vesicular exosome IDA19199708

    Find genes that share ontologies with TPRG1L           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TPRG1L
    Interactions:

        Search GeneGlobe Interaction Network for TPRG1L

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    Selected Interacting proteins for TPRG1L (Q5T0D93 ENSP000003675954) via UniProtKB, MINT, STRING, and/or I2D (see all 7)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MED6O755863I2D: score=1 
    MLH1P406923I2D: score=1 
    ENSG00000227317ENSP000004031544STRING: ENSP00000403154
    HSD3B1ENSP000003584214STRING: ENSP00000358421
    PRUNEENSP000002716204STRING: ENSP00000271620
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for TPRG1L (TPRGL)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for TPRG1L gene: 
    NM_182752.3  

    Unigene Cluster for TPRG1L:

    Tumor protein p63 regulated 1-like
    Hs.20529  [show with all ESTs]
    Unigene Representative Sequence: NM_182752
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000378344(uc001akm.3 uc009vlj.3) ENST00000344579
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate TPRG1L (see all 27):
    hsa-miR-623 hsa-miR-30c hsa-miR-3938 hsa-miR-106a hsa-miR-30d hsa-miR-519a hsa-miR-3133 hsa-miR-511
    SwitchGear 3'UTR luciferase reporter plasmidTPRG1L 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat TPRG1L
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      QuantiTect SYBR Green Assays in human, mouse, rat TPRG1L
      QuantiFast Probe-based Assays in human, mouse, rat TPRG1L

    Additional mRNA sequence: 

    AK025409.1 AK025464.1 AK096427.1 AK289919.1 AK298343.1 BC019034.2 BC114609.1 

    7 DOTS entries:

    DT.40316374  DT.452291  DT.87015841  DT.100783784  DT.100783785  DT.97846026  DT.95188009 

    Selected AceView cDNA sequences (see all 202):

    AI684853 BI822189 CD244711 BE857132 AI357751 BG764620 NM_182752 BM476269 
    BX464752 BG945913 H20382 BG612339 AJ709939 AI423813 BM745410 AI720426 
    CF132275 AI686224 CA396871 AI084147 AA588719 AI783941 AA974056 AA854468 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    TPRG1L expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGTTGAGTGT
    TPRG1L Expression
    About this image


    TPRG1L expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Brain (Nervous System)
             Cerebral Cortex
     
     Esophagus (Gastrointestinal Tract)
     
     Kidney (Urinary System)
    TPRG1L Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    TPRG1L Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.20529
        Custom PCR Arrays for TPRG1L
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for TPRG1L gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tprgl1 , 5 transformation related protein 63 regulated like1, 5 87.09(n)1
    91.73(a)1
      4 (83.88 cM)5
    678081  NM_026388.21  NP_080664.11 
     1541574855 
    chicken
    (Gallus gallus)
    Aves TPRG1L1 tumor protein p63 regulated 1-like 77.35(n)
    83.98(a)
      419384  XM_417547.4  XP_417547.3 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.237482 Xenopus laevis transcribed sequences 74.23(n)    CA981787.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.152002 Transcribed sequences 73.68(n)    CK395596.1 


    ENSEMBL Gene Tree for TPRG1L (if available)
    TreeFam Gene Tree for TPRG1L (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for TPRG1L gene
    TPRG12  
    1 SIMAP similar gene for TPRG1L using alignment to 1 protein entry:     TPRGL_HUMAN:
    TPRG1

    Find genes that share paralogs with TPRG1L           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for TPRG1L
    PGOHUM00000234814


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for TPRG1L (see all 183)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs121281321,2
    C,F--3539603(+) CCCAGC/ACAGTG 1 -- us2k1 tfbs31Minor allele frequency- A:0.04NA 120
    rs740486831,2
    C,F--3539679(+) AACTTG/ACTCCT 1 -- us2k12Minor allele frequency- A:0.09WA 120
    rs120736181,2
    C,F--3539786(+) GGAATC/TTCTGG 1 -- us2k1 tfbs34Minor allele frequency- T:0.25WA CSA 123
    rs1930798141,2
    --3539823(+) CTTGCA/CGCTGT 1 -- us2k10--------
    rs802966151,2
    C,F--3539825(+) TGCAGC/TTGTCC 1 -- us2k12Minor allele frequency- T:0.05CSA WA 120
    rs1163623441,2
    C,F--3539980(+) TAAGAT/GAGCTG 1 -- us2k11Minor allele frequency- G:0.12WA 118
    rs127576201,2
    C,F,H--3540024(+) CTTGCT/GGGGCG 1 -- us2k110Minor allele frequency- G:0.40NS EA NA WA 770
    rs1495911851,2
    --3540029(+) TGGGCA/GTGCCA 1 -- us2k10--------
    rs792005051,2
    --3540078(+) CTCACC/GCCTGT 1 -- us2k10--------
    rs413153001,2
    C,F--3540146(+) TGGTCC/GACAGG 1 -- us2k15Minor allele frequency- G:0.23NA EA 246

    HapMap Linkage Disequilibrium report for TPRG1L (3541556 - 3546695 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for TPRG1L (see all 15):    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv103n71CNV Loss21882294
    nsv871942CNV Loss21882294
    dgv110n71CNV Loss21882294
    dgv111n71CNV Loss21882294
    nsv871581CNV Loss21882294
    nsv871823CNV Loss21882294
    nsv870859CNV Loss21882294
    dgv112n71CNV Loss21882294
    dgv109n71CNV Loss21882294
    dgv95n71CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 611460    OMIM disorders: --


    Find genes that share disorders with TPRG1L           About GenesLikeMe


    Export disorders for TPRG1L gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for TPRG1L gene integrated from 10 sources:
    (articles sorted by number of sources associating them with TPRG1L)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    5. Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). (PubMed id 19199708)1 Gonzalez-Begne M....Yates J.R. (J. Proteome Res. 2009)
    6. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    7. Mover is a novel vertebrate-specific presynaptic protein with differential distribution at subsets of CNS synapses. (PubMed id 17869247)1 Kremer T....Dresbach T. (FEBS Lett. 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 127262 HGNC: 27007 AceView: LOC127262 Ensembl:ENSG00000158109 euGenes: HUgn127262
    ECgene: TPRG1L H-InvDB: TPRG1L

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for TPRG1L Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for TPRG1L gene:
    Search GeneIP for patents involving TPRG1L

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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