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Aliases for TPRG1-AS1 Gene

Subcategory (RNA class) for TPRG1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TPRG1-AS1 Gene

  • TPRG1 Antisense RNA 1 2 3 5
  • TPRG1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TPRG1-AS1 Gene

Previous GeneCards Identifiers for TPRG1-AS1 Gene

  • GC00U933570
  • GC03M188660

Summaries for TPRG1-AS1 Gene

GeneCards Summary for TPRG1-AS1 Gene

TPRG1-AS1 (TPRG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRG1-AS1 Gene

Genomics for TPRG1-AS1 Gene

Regulatory Elements for TPRG1-AS1 Gene

Enhancers for TPRG1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F188899 1.2 FANTOM5 Ensembl ENCODE 11.6 +46.6 46634 3.2 SOX13 JUN BHLHE40 HMG20A EP300 ZNF7 JUND FOXP2 CREM MAFK TPRG1 TPRG1-AS1 GC03P188886
GH03F188916 1 Ensembl ENCODE 11.3 +30.1 30139 2.2 HLF CEBPB JUNB RAD21 ZNF664 MAFF ATF3 CEBPA MAFK ZNF558 TPRG1 TPRG1-AS1 GC03P188886
GH03F188911 0.7 Ensembl 11.1 +36.4 36439 0.4 ATF2 TPRG1 TPRG1-AS1 GC03P188886
GH03F188914 1.2 FANTOM5 Ensembl ENCODE 11.1 +32.8 32839 1.6 BHLHE40 HLF RAD21 NR2F2 JUND ATF3 HNF4G FOS MAFK NFE2L2 TPRG1 TPRG1-AS1 GC03P188886
GH03F188890 0.2 ENCODE 10.2 +57.0 56994 0.9 ZNF280D JUND FOS RCOR1 KDM1A TPRG1 TPRG1-AS1 GC03P188886
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TPRG1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TPRG1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001382386 -61 1401 ZNF76 SIN3A KLF17 ZNF2 RAD21 RFX5 YY1 ZNF121 GLIS2 ZNF366

Genomic Location for TPRG1-AS1 Gene

Chromosome:
3
Start:
188,941,715 bp from pter
End:
188,947,639 bp from pter
Size:
5,925 bases
Orientation:
Minus strand

Genomic View for TPRG1-AS1 Gene

Genes around TPRG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRG1-AS1 Gene

Proteins for TPRG1-AS1 Gene

Post-translational modifications for TPRG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRG1-AS1 Gene

Domains & Families for TPRG1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPRG1-AS1 Gene

Function for TPRG1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRG1-AS1 Gene

Localization for TPRG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPRG1-AS1 Gene

Pathways & Interactions for TPRG1-AS1 Gene

SuperPathways for TPRG1-AS1 Gene

No Data Available

Interacting Proteins for TPRG1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPRG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRG1-AS1 Gene

Transcripts for TPRG1-AS1 Gene

mRNA/cDNA for TPRG1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TPRG1-AS1 Gene

No ASD Table

Relevant External Links for TPRG1-AS1 Gene

GeneLoc Exon Structure for
TPRG1-AS1
ECgene alternative splicing isoforms for
TPRG1-AS1

Expression for TPRG1-AS1 Gene

mRNA expression in normal human tissues for TPRG1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TPRG1-AS1 Gene

This gene is overexpressed in Liver (x15.1), Adipose - Visceral (Omentum) (x4.5), and Adrenal Gland (x4.0).
genes like me logo Genes that share expression patterns with TPRG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPRG1-AS1 Gene

Orthologs for TPRG1-AS1 Gene

Evolution for TPRG1-AS1 Gene

ENSEMBL:
Gene Tree for TPRG1-AS1 (if available)
TreeFam:
Gene Tree for TPRG1-AS1 (if available)

No data available for Orthologs for TPRG1-AS1 Gene

Paralogs for TPRG1-AS1 Gene

No data available for Paralogs for TPRG1-AS1 Gene

Variants for TPRG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPRG1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10490878 -- 188,944,162(+) AATTG(C/T)CTTTC intron-variant
rs10706463 -- 188,947,287(+) AGCTA(-/T)TGCAC nc-transcript-variant, upstream-variant-2KB
rs112079957 -- 188,943,291(+) CCTCA(A/G)CATTC intron-variant
rs112093298 -- 188,947,250(+) AAATG(C/G)AGAGG intron-variant, upstream-variant-2KB
rs11279519 -- 188,946,792(+) AAGAC(-/TCCATT)TCTAC intron-variant, upstream-variant-2KB

Relevant External Links for TPRG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPRG1-AS1 Gene

Disorders for TPRG1-AS1 Gene

Relevant External Links for TPRG1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPRG1-AS1

No disorders were found for TPRG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPRG1-AS1 Gene

Publications for TPRG1-AS1 Gene

No publications were found for TPRG1-AS1 Gene.

Products for TPRG1-AS1 Gene

Sources for TPRG1-AS1 Gene

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