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Aliases for TPRG1-AS1 Gene

Subcategory (RNA class) for TPRG1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TPRG1-AS1 Gene

  • TPRG1 Antisense RNA 1 2 3 5
  • TPRG1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TPRG1-AS1 Gene

Previous GeneCards Identifiers for TPRG1-AS1 Gene

  • GC00U933570
  • GC03M188660

Summaries for TPRG1-AS1 Gene

GeneCards Summary for TPRG1-AS1 Gene

TPRG1-AS1 (TPRG1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRG1-AS1 Gene

Genomics for TPRG1-AS1 Gene

Regulatory Elements for TPRG1-AS1 Gene

Enhancers for TPRG1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G188899 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +46.6 46642 3.2 SOX13 FOXA2 JUN BHLHE40 HMG20A EP300 ZNF7 JUND GATA2 FOS TPRG1 TPRG1-AS1 GC03P188886
GH03G188914 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +32.9 32938 1.4 FOXA2 BHLHE40 MAX RAD21 NR2F2 FOXA1 JUND ATF3 GATA2 HNF4G TPRG1 TPRG1-AS1 GC03P188886
GH03G188916 1 Ensembl ENCODE 11.1 +30.1 30050 1.6 MAX RAD21 YY1 ZNF664 GATA2 FOS MAFK HLF JUNB CEBPB TPRG1 TPRG1-AS1 GC03P188886
GH03G188946 1.7 FANTOM5 ENCODE dbSUPER 5 -1.4 -1424 6.1 FOXA2 SIN3A ZNF2 YY1 ZNF121 GLIS2 GATA2 FOS ZNF263 SP3 TPRG1-AS1 GC03P188961
GH03G188163 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5 +781.9 781898 3.6 CTCF ESRRA MAX RAD21 RARA ZNF121 CTBP1 GATA3 GATA2 FOSL2 BCL6 ENSG00000223401 TPRG1-AS1 LPP-AS2 FLJ42393
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPRG1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TPRG1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000163603 -161 801 SIN3A ZNF76 KLF17 ZNF2 RAD21 RFX5 YY1 ZNF121 GLIS2 ZNF366

Genomic Location for TPRG1-AS1 Gene

Chromosome:
3
Start:
188,941,715 bp from pter
End:
188,947,639 bp from pter
Size:
5,925 bases
Orientation:
Minus strand

Genomic View for TPRG1-AS1 Gene

Genes around TPRG1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRG1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRG1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRG1-AS1 Gene

Proteins for TPRG1-AS1 Gene

Post-translational modifications for TPRG1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRG1-AS1 Gene

Domains & Families for TPRG1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPRG1-AS1 Gene

Function for TPRG1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPRG1-AS1 Gene

Localization for TPRG1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPRG1-AS1 Gene

Pathways & Interactions for TPRG1-AS1 Gene

SuperPathways for TPRG1-AS1 Gene

No Data Available

Interacting Proteins for TPRG1-AS1 Gene

Gene Ontology (GO) - Biological Process for TPRG1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRG1-AS1 Gene

Drugs & Compounds for TPRG1-AS1 Gene

No Compound Related Data Available

Transcripts for TPRG1-AS1 Gene

mRNA/cDNA for TPRG1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TPRG1-AS1 Gene

No ASD Table

Relevant External Links for TPRG1-AS1 Gene

GeneLoc Exon Structure for
TPRG1-AS1
ECgene alternative splicing isoforms for
TPRG1-AS1

Expression for TPRG1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPRG1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TPRG1-AS1 Gene

This gene is overexpressed in Liver (x15.1), Adipose - Visceral (Omentum) (x4.5), and Adrenal Gland (x4.0).
genes like me logo Genes that share expression patterns with TPRG1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPRG1-AS1 Gene

Orthologs for TPRG1-AS1 Gene

Evolution for TPRG1-AS1 Gene

ENSEMBL:
Gene Tree for TPRG1-AS1 (if available)
TreeFam:
Gene Tree for TPRG1-AS1 (if available)

No data available for Orthologs for TPRG1-AS1 Gene

Paralogs for TPRG1-AS1 Gene

No data available for Paralogs for TPRG1-AS1 Gene

Variants for TPRG1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TPRG1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1001156095 -- 188,945,343(+) CTCAC(G/T)GCAGC intron-variant
rs1001420764 -- 188,945,100(+) CCTGG(A/G)ACACC intron-variant
rs1001578169 -- 188,947,380(+) CCTGG(A/G)GATCT nc-transcript-variant
rs1001595698 -- 188,944,676(+) CTGTT(C/T)ACTGA intron-variant
rs1001914943 -- 188,945,923(+) TCCTG(C/G)CTCAG intron-variant, upstream-variant-2KB

Relevant External Links for TPRG1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRG1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPRG1-AS1 Gene

Disorders for TPRG1-AS1 Gene

Relevant External Links for TPRG1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPRG1-AS1

No disorders were found for TPRG1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPRG1-AS1 Gene

Publications for TPRG1-AS1 Gene

No publications were found for TPRG1-AS1 Gene.

Products for TPRG1-AS1 Gene

Sources for TPRG1-AS1 Gene

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