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Aliases for TPRG1 Gene

Aliases for TPRG1 Gene

  • Tumor Protein P63 Regulated 1 2 3 5
  • Family With Sequence Similarity 79, Member B 2 3
  • FAM79B 3 4
  • Tumor Protein P63-Regulated Gene 1 Protein 3
  • Protein FAM79B 4

External Ids for TPRG1 Gene

Previous HGNC Symbols for TPRG1 Gene

  • FAM79B

Previous GeneCards Identifiers for TPRG1 Gene

  • GC03P190375
  • GC03P188665
  • GC03P186294

Summaries for TPRG1 Gene

GeneCards Summary for TPRG1 Gene

TPRG1 (Tumor Protein P63 Regulated 1) is a Protein Coding gene. An important paralog of this gene is TPRG1L.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPRG1 Gene

Genomics for TPRG1 Gene

Regulatory Elements for TPRG1 Gene

Enhancers for TPRG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F188899 1.2 FANTOM5 Ensembl ENCODE 11.6 -46.2 -46209 3.2 SOX13 JUN BHLHE40 HMG20A EP300 ZNF7 JUND FOXP2 CREM MAFK TPRG1 TPRG1-AS1 GC03P188886
GH03F188916 1 Ensembl ENCODE 11.3 -29.7 -29714 2.2 HLF CEBPB JUNB RAD21 ZNF664 MAFF ATF3 CEBPA MAFK ZNF558 TPRG1 TPRG1-AS1 GC03P188886
GH03F188911 0.7 Ensembl 11.1 -36.0 -36014 0.4 ATF2 TPRG1 TPRG1-AS1 GC03P188886
GH03F188914 1.2 FANTOM5 Ensembl ENCODE 11.1 -32.4 -32414 1.6 BHLHE40 HLF RAD21 NR2F2 JUND ATF3 HNF4G FOS MAFK NFE2L2 TPRG1 TPRG1-AS1 GC03P188886
GH03F188890 0.2 ENCODE 10.2 -56.6 -56569 0.9 ZNF280D JUND FOS RCOR1 KDM1A TPRG1 TPRG1-AS1 GC03P188886
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TPRG1 on UCSC Golden Path with GeneCards custom track

Promoters for TPRG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001382386 486 1401 ZNF76 SIN3A KLF17 ZNF2 RAD21 RFX5 YY1 ZNF121 GLIS2 ZNF366

Genomic Location for TPRG1 Gene

Chromosome:
3
Start:
188,947,214 bp from pter
End:
189,325,304 bp from pter
Size:
378,091 bases
Orientation:
Plus strand

Genomic View for TPRG1 Gene

Genes around TPRG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPRG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPRG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPRG1 Gene

Proteins for TPRG1 Gene

  • Protein details for TPRG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUI0-TPRG1_HUMAN
    Recommended name:
    Tumor protein p63-regulated gene 1 protein
    Protein Accession:
    Q6ZUI0

    Protein attributes for TPRG1 Gene

    Size:
    275 amino acids
    Molecular mass:
    31230 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TPRG1 Gene

Post-translational modifications for TPRG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPRG1 Gene

Domains & Families for TPRG1 Gene

Protein Domains for TPRG1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TPRG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZUI0

UniProtKB/Swiss-Prot:

TPRG1_HUMAN :
  • Contains 1 hSac2 domain.
  • Belongs to the TPRG1 family.
Domain:
  • Contains 1 hSac2 domain.
Family:
  • Belongs to the TPRG1 family.
genes like me logo Genes that share domains with TPRG1: view

No data available for Gene Families for TPRG1 Gene

Function for TPRG1 Gene

Phenotypes for TPRG1 Gene

GenomeRNAi human phenotypes for TPRG1:
genes like me logo Genes that share phenotypes with TPRG1: view

Animal Model Products

miRNA for TPRG1 Gene

miRTarBase miRNAs that target TPRG1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TPRG1 Gene

Localization for TPRG1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TPRG1 Gene COMPARTMENTS Subcellular localization image for TPRG1 gene
Compartment Confidence
cytoskeleton 2
cytosol 2
extracellular 1
golgi apparatus 1
mitochondrion 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TPRG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TPRG1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TPRG1 Gene

Pathways & Interactions for TPRG1 Gene

SuperPathways for TPRG1 Gene

No Data Available

Interacting Proteins for TPRG1 Gene

Gene Ontology (GO) - Biological Process for TPRG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPRG1 Gene

Transcripts for TPRG1 Gene

Unigene Clusters for TPRG1 Gene

Tumor protein p63 regulated 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPRG1 Gene

No ASD Table

Relevant External Links for TPRG1 Gene

GeneLoc Exon Structure for
TPRG1
ECgene alternative splicing isoforms for
TPRG1

Expression for TPRG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TPRG1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TPRG1 Gene

This gene is overexpressed in Esophagus - Mucosa (x9.8), Vagina (x6.7), Skin - Sun Exposed (Lower leg) (x5.9), Skin - Not Sun Exposed (Suprapubic) (x5.4), and Cervix - Ectocervix (x4.7).

Protein differential expression in normal tissues from HIPED for TPRG1 Gene

This gene is overexpressed in Cervix (66.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TPRG1 Gene



Protein tissue co-expression partners for TPRG1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TPRG1 Gene:

TPRG1

SOURCE GeneReport for Unigene cluster for TPRG1 Gene:

Hs.729544
genes like me logo Genes that share expression patterns with TPRG1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for TPRG1 Gene

Orthologs for TPRG1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TPRG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TPRG1 34 35
  • 99.52 (n)
dog
(Canis familiaris)
Mammalia TPRG1 34 35
  • 90.18 (n)
cow
(Bos Taurus)
Mammalia TPRG1 34 35
  • 87.52 (n)
rat
(Rattus norvegicus)
Mammalia Tprg1 34
  • 84.91 (n)
mouse
(Mus musculus)
Mammalia Tprg 34 16 35
  • 84.73 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TPRG1 35
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TPRG1 35
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TPRG1 35
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tprg1 34
  • 60.49 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC68514 34
zebrafish
(Danio rerio)
Actinopterygii tprg1 34 35
  • 57.05 (n)
Species where no ortholog for TPRG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TPRG1 Gene

ENSEMBL:
Gene Tree for TPRG1 (if available)
TreeFam:
Gene Tree for TPRG1 (if available)

Paralogs for TPRG1 Gene

Paralogs for TPRG1 Gene

(1) SIMAP similar genes for TPRG1 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for TPRG1 Gene

genes like me logo Genes that share paralogs with TPRG1: view

Variants for TPRG1 Gene

Sequence variations from dbSNP and Humsavar for TPRG1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000291 -- 189,265,019(-) ACTTT(C/T)CTCAC intron-variant
rs10084750 -- 189,069,468(+) ttgta(C/T)gatag intron-variant
rs1009267 -- 189,265,663(+) GGACT(C/G)CTTAA intron-variant
rs1020492 -- 189,188,576(-) CAGAA(A/G)TTCTA intron-variant, utr-variant-5-prime
rs1020493 -- 189,176,238(-) GAGGC(A/G)CAGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPRG1 Gene

Variant ID Type Subtype PubMed ID
esv2726358 CNV deletion 23290073
nsv236710 CNV deletion 16902084
nsv829819 CNV gain 17160897

Variation tolerance for TPRG1 Gene

Residual Variation Intolerance Score: 45.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.54; 29.83% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TPRG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPRG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TPRG1 Gene

Disorders for TPRG1 Gene

Relevant External Links for TPRG1

Genetic Association Database (GAD)
TPRG1
Human Genome Epidemiology (HuGE) Navigator
TPRG1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPRG1

No disorders were found for TPRG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPRG1 Gene

Publications for TPRG1 Gene

  1. Non-replication of association for six polymorphisms from meta-analysis of genome-wide association studies of Parkinson's disease: large-scale collaborative study. (PMID: 19475631) Evangelou E. … Ioannidis J.P. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2010) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. (PMID: 24144296) Cheng C.Y. … Baird P.N. (Am. J. Hum. Genet. 2013) 3 64
  5. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 46 64

Products for TPRG1 Gene

Sources for TPRG1 Gene

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