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Aliases for TPM4P1 Gene

Subcategory (RNA class) for TPM4P1 Gene

lncRNA

Aliases for TPM4P1 Gene

  • Tropomyosin 4 Pseudogene 1 2 3 5

External Ids for TPM4P1 Gene

ORGUL Members for TPM4P1 Gene

Previous GeneCards Identifiers for TPM4P1 Gene

  • GC10M101875

Summaries for TPM4P1 Gene

GeneCards Summary for TPM4P1 Gene

TPM4P1 (Tropomyosin 4 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPM4P1 Gene

Genomics for TPM4P1 Gene

Regulatory Elements for TPM4P1 Gene

Enhancers for TPM4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F100369 1 FANTOM5 ENCODE 16.2 -257.2 -257221 6.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 ENSG00000231188 PHBP9 SEC31B HIF1AN SPCS2P2 TPM4P1 SCD ENSG00000272572 CHUK NDUFB8
GH10F100986 1 ENCODE 16.2 -872.4 -872424 2.5 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF416 ZNF143 ENSG00000272572 PHBP9 CHUK ENSG00000231188 TPM4P1 SPCS2P2 MRPL43 ENSG00000236308 PDZD7 PIR47631
GH10F100995 1 ENCODE 16.2 -884.1 -884082 7.4 HDGF ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ENSG00000231188 TPM4P1 SPCS2P2 MRPL43 SEMA4G MIR608 ENSG00000272572 KCNIP2 LZTS2 PDZD7
GH10F099617 0.2 ENCODE 16.2 +495.3 495289 5.6 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 TPM4P1 SPCS2P2 ENSG00000231188 NKX2-3 CHUK CUTC ENTPD7 ABCC2 EBAG9P1 CWF19L1
GH10F099519 0.2 ENCODE 16.2 +593.0 593015 5.9 PKNOX1 ZFP64 FEZF1 ZNF48 ZNF2 ZNF121 GLIS2 KLF7 ZNF263 SP3 TPM4P1 SPCS2P2 ENSG00000231188 LINC01475 BLOC1S2 ENSG00000228778 GC10P099494
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TPM4P1 on UCSC Golden Path with GeneCards custom track

Promoters for TPM4P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001763490 22 399 ZNF202 ZNF140 ZXDB ZNF558

Genomic Location for TPM4P1 Gene

Chromosome:
10
Start:
100,114,417 bp from pter
End:
100,115,223 bp from pter
Size:
807 bases
Orientation:
Minus strand

Genomic View for TPM4P1 Gene

Genes around TPM4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM4P1 Gene

Proteins for TPM4P1 Gene

Post-translational modifications for TPM4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPM4P1 Gene

Domains & Families for TPM4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPM4P1 Gene

Function for TPM4P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPM4P1 Gene

Localization for TPM4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPM4P1 Gene

Pathways & Interactions for TPM4P1 Gene

SuperPathways for TPM4P1 Gene

No Data Available

Interacting Proteins for TPM4P1 Gene

Gene Ontology (GO) - Biological Process for TPM4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPM4P1 Gene

Transcripts for TPM4P1 Gene

mRNA/cDNA for TPM4P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TPM4P1 Gene

No ASD Table

Relevant External Links for TPM4P1 Gene

GeneLoc Exon Structure for
TPM4P1
ECgene alternative splicing isoforms for
TPM4P1

Expression for TPM4P1 Gene

mRNA expression in normal human tissues for TPM4P1 Gene

mRNA differential expression in normal tissues according to GTEx for TPM4P1 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of TPM4P1 Gene:

TPM4P1
genes like me logo Genes that share expression patterns with TPM4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPM4P1 Gene

Orthologs for TPM4P1 Gene

Evolution for TPM4P1 Gene

ENSEMBL:
Gene Tree for TPM4P1 (if available)
TreeFam:
Gene Tree for TPM4P1 (if available)

No data available for Orthologs for TPM4P1 Gene

Paralogs for TPM4P1 Gene

No data available for Paralogs for TPM4P1 Gene

Variants for TPM4P1 Gene

Relevant External Links for TPM4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPM4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPM4P1 Gene

Disorders for TPM4P1 Gene

No disorders were found for TPM4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TPM4P1 Gene

Publications for TPM4P1 Gene

No publications were found for TPM4P1 Gene.

Products for TPM4P1 Gene

Sources for TPM4P1 Gene

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