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Aliases for TPM4 Gene

Aliases for TPM4 Gene

  • Tropomyosin 4 2 3 5
  • TM30p1 3 4
  • Epididymis Secretory Protein Li 108 3
  • Tropomyosin Alpha-4 Chain 3
  • Tropomyosin-4 4
  • HEL-S-108 3

External Ids for TPM4 Gene

Previous GeneCards Identifiers for TPM4 Gene

  • GC19P016682
  • GC19P016571
  • GC19P016023
  • GC19P016048
  • GC19P016039
  • GC19P016178
  • GC19P015749
  • GC19P017060
  • GC19P017322
  • GC19P017852
  • GC19P016069
  • GC19P016765
  • GC19P017020
  • GC19P018205
  • GC19P018599
  • GC19P018916

Summaries for TPM4 Gene

Entrez Gene Summary for TPM4 Gene

  • This gene encodes a member of the tropomyosin family of actin-binding proteins involved in the contractile system of striated and smooth muscles and the cytoskeleton of non-muscle cells. Tropomyosins are dimers of coiled-coil proteins that polymerize end-to-end along the major groove in most actin filaments. They provide stability to the filaments and regulate access of other actin-binding proteins. In muscle cells, they regulate muscle contraction by controlling the binding of myosin heads to the actin filament. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2009]

GeneCards Summary for TPM4 Gene

TPM4 (Tropomyosin 4) is a Protein Coding gene. Diseases associated with TPM4 include Inflammatory Myofibroblastic Tumor and Autosomal Dominant Macrothrombocytopenia. Among its related pathways are Striated Muscle Contraction and Dilated cardiomyopathy (DCM). GO annotations related to this gene include calcium ion binding and structural constituent of muscle. An important paralog of this gene is TPM2.

UniProtKB/Swiss-Prot for TPM4 Gene

  • Binds to actin filaments in muscle and non-muscle cells. Plays a central role, in association with the troponin complex, in the calcium dependent regulation of vertebrate striated muscle contraction. Smooth muscle contraction is regulated by interaction with caldesmon. In non-muscle cells is implicated in stabilizing cytoskeleton actin filaments. Binds calcium.

Gene Wiki entry for TPM4 Gene

Additional gene information for TPM4 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPM4 Gene

Genomics for TPM4 Gene

Regulatory Elements for TPM4 Gene

Enhancers for TPM4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H016063 1.9 FANTOM5 ENCODE dbSUPER 27.2 +5.9 5893 18 FEZF1 DMAP1 ZNF143 SP3 MCM3 MEF2D SSRP1 GLIS1 RCOR2 NBN AKAP8 CHERP ENSG00000269578 BRD4 C19orf44 ENSG00000267904 ENSG00000268087 TPM4 SMIM7 OR10H5
GH19H015123 1.4 ENCODE dbSUPER 20.2 -941.8 -941770 3 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 AKAP8 BRD4 ZNF333 TPM4 AKAP8L OR10H2 OR1AB1P LINC01855 OR10H5 LINC00905
GH19H015416 1.4 ENCODE dbSUPER 19.5 -648.6 -648610 3 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 AKAP8 ZNF333 TPM4 BRD4 OR10H2 OR10H5 LINC00905 LINC01855 OR1AB1P DDX39A
GH19H016256 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14 +193.4 193415 7 HDGF PKNOX1 ATF1 FOXA2 ARNT ZFP64 ARID4B ZBTB7B TCF12 ZNF766 AKAP8 TPM4 AP1M1 HAUS8 BRD4 LINC01835 CHERP ENSG00000269578 GC19M016240 PIR54763
GH19H016282 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14 +217.8 217784 5 BCOR TAF1 ZMYM3 MAX CEBPG NFXL1 ZNF2 EGR1 POLR2A ZNF366 AKAP8 KLF2 TPM4 HAUS8 BRD4 LINC01835 CHERP ENSG00000269578 NWD1 PIR54763
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPM4 on UCSC Golden Path with GeneCards custom track

Promoters for TPM4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000287657 779 401 BCOR SMARCC1 SREBF2 ZSCAN4 TSC22D4 MAX SMARCB1 ZKSCAN1 POLR2A GLIS1

Genomic Location for TPM4 Gene

Chromosome:
19
Start:
16,067,021 bp from pter
End:
16,103,005 bp from pter
Size:
35,985 bases
Orientation:
Plus strand

Genomic View for TPM4 Gene

Genes around TPM4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM4 Gene

Proteins for TPM4 Gene

  • Protein details for TPM4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P67936-TPM4_HUMAN
    Recommended name:
    Tropomyosin alpha-4 chain
    Protein Accession:
    P67936
    Secondary Accessions:
    • P07226
    • Q15659
    • Q5U0D9
    • Q9BU85
    • Q9H8Q3
    • Q9UCS1
    • Q9UCS2
    • Q9UCS3
    • Q9UCS4

    Protein attributes for TPM4 Gene

    Size:
    248 amino acids
    Molecular mass:
    28522 Da
    Quaternary structure:
    • Heterodimer of an alpha and a beta chain.

    Alternative splice isoforms for TPM4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TPM4 Gene

Post-translational modifications for TPM4 Gene

  • Ubiquitination at Lys13, Lys190, and posLast=228228
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TPM4 Gene

Domains & Families for TPM4 Gene

Gene Families for TPM4 Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for TPM4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TPM4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P67936

UniProtKB/Swiss-Prot:

TPM4_HUMAN :
  • The molecule is in a coiled coil structure that is formed by 2 polypeptide chains. The sequence exhibits a prominent seven-residues periodicity.
  • Belongs to the tropomyosin family.
Domain:
  • The molecule is in a coiled coil structure that is formed by 2 polypeptide chains. The sequence exhibits a prominent seven-residues periodicity.
Family:
  • Belongs to the tropomyosin family.
genes like me logo Genes that share domains with TPM4: view

Function for TPM4 Gene

Molecular function for TPM4 Gene

GENATLAS Biochemistry:
tropomyosin 4,alpha,skeletal muscle and non muscle isoforms,dimerizing to form a helical coiled coil binding to actin in the troponin complex (thin filamant) that regulates calcium-dependent binding of actin and myosin and muscle contraction
UniProtKB/Swiss-Prot Function:
Binds to actin filaments in muscle and non-muscle cells. Plays a central role, in association with the troponin complex, in the calcium dependent regulation of vertebrate striated muscle contraction. Smooth muscle contraction is regulated by interaction with caldesmon. In non-muscle cells is implicated in stabilizing cytoskeleton actin filaments. Binds calcium.

Phenotypes From GWAS Catalog for TPM4 Gene

Gene Ontology (GO) - Molecular Function for TPM4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding IEA --
GO:0005509 calcium ion binding NAS 1836432
GO:0005515 protein binding IPI 24407287
GO:0008307 structural constituent of muscle TAS 8641132
GO:0042802 identical protein binding ISS --
genes like me logo Genes that share ontologies with TPM4: view
genes like me logo Genes that share phenotypes with TPM4: view

Animal Model Products

CRISPR Products

miRNA for TPM4 Gene

miRTarBase miRNAs that target TPM4

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TPM4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TPM4 Gene

Localization for TPM4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TPM4 Gene

Cytoplasm, cytoskeleton.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TPM4 gene
Compartment Confidence
extracellular 5
cytoskeleton 5
cytosol 5

Subcellular locations from the

Human Protein Atlas (HPA)
  • Actin filaments (2)
  • Cytosol (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TPM4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001725 stress fiber IDA 16236705
GO:0002102 podosome IEA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
GO:0005856 cytoskeleton TAS 16130169
genes like me logo Genes that share ontologies with TPM4: view

Pathways & Interactions for TPM4 Gene

genes like me logo Genes that share pathways with TPM4: view

Gene Ontology (GO) - Biological Process for TPM4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001649 osteoblast differentiation IDA 16210410
GO:0006928 movement of cell or subcellular component TAS 16130169
GO:0006936 muscle contraction IBA,TAS --
GO:0007015 actin filament organization IBA --
GO:0030049 muscle filament sliding TAS --
genes like me logo Genes that share ontologies with TPM4: view

No data available for SIGNOR curated interactions for TPM4 Gene

Drugs & Compounds for TPM4 Gene

(2) Drugs for TPM4 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phenethyl isothiocyanate Investigational Pharma Target 12
calcium Nutra 0
genes like me logo Genes that share compounds with TPM4: view

Transcripts for TPM4 Gene

Unigene Clusters for TPM4 Gene

Tropomyosin 4:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TPM4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TPM4 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b
SP1: - - - - - -
SP2: - - - -
SP3: -
SP4: -
SP5: - - -
SP6: - - - -
SP7: -

Relevant External Links for TPM4 Gene

GeneLoc Exon Structure for
TPM4
ECgene alternative splicing isoforms for
TPM4

Expression for TPM4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPM4 Gene

Protein differential expression in normal tissues from HIPED for TPM4 Gene

This gene is overexpressed in Platelet (9.0) and Bone marrow stromal cell (8.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TPM4 Gene



Protein tissue co-expression partners for TPM4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TPM4 Gene:

TPM4

SOURCE GeneReport for Unigene cluster for TPM4 Gene:

Hs.631618

mRNA Expression by UniProt/SwissProt for TPM4 Gene:

P67936-TPM4_HUMAN
Tissue specificity: Detected in cardiac tissue and platelets, the form found in cardiac tissue is a higher molecular weight than the form found in platelets. Expressed at higher levels in the platelets of hypertensive patients with cardiac hypertrophy than in the platelets of hypertensive patients without cardiac hypertrophy (at protein level).

Evidence on tissue expression from TISSUES for TPM4 Gene

  • Nervous system(4.7)
  • Skin(4.4)
  • Blood(4.3)
  • Liver(4.3)
  • Eye(4.2)
  • Heart(2.8)
  • Muscle(2.7)
  • Spleen(2.7)
  • Lung(2.5)
  • Intestine(2.4)
  • Gall bladder(2.3)
  • Kidney(2.1)
  • Stomach(2.1)
  • Lymph node(2)
genes like me logo Genes that share expression patterns with TPM4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPM4 Gene

Orthologs for TPM4 Gene

This gene was present in the common ancestor of animals.

Orthologs for TPM4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TPM4 33 34
  • 93.78 (n)
dog
(Canis familiaris)
Mammalia TPM4 33 34
  • 92.72 (n)
oppossum
(Monodelphis domestica)
Mammalia TPM4 34
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TPM4 34
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TPM4 34
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tpm4 34
  • 85 (a)
OneToOne
chicken
(Gallus gallus)
Aves TPM4 34
  • 88 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TPM4 34
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.568 33
zebrafish
(Danio rerio)
Actinopterygii tpm4b 34
  • 78 (a)
ManyToMany
tpm4a 33
  • 76.64 (n)
fruit fly
(Drosophila melanogaster)
Insecta Tm2 34
  • 46 (a)
ManyToMany
Tm1 34
  • 21 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea lev-11 34
  • 56 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11015 34
  • 69 (a)
ManyToMany
CSA.10371 34
  • 63 (a)
ManyToMany
Species where no ortholog for TPM4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TPM4 Gene

ENSEMBL:
Gene Tree for TPM4 (if available)
TreeFam:
Gene Tree for TPM4 (if available)

Paralogs for TPM4 Gene

Paralogs for TPM4 Gene

genes like me logo Genes that share paralogs with TPM4: view

Variants for TPM4 Gene

Sequence variations from dbSNP and Humsavar for TPM4 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
VAR_036535 A breast cancer sample
rs1000012430 -- 16,074,986(+) ACCGG(C/G)GAGGT intron-variant, upstream-variant-2KB
rs1000112794 -- 16,092,274(+) GGACT(A/G)GGACT intron-variant
rs1000162675 -- 16,095,250(+) GGGGA(C/G)CTCCG intron-variant
rs1000308941 -- 16,070,541(+) TGGCC(A/T)TGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPM4 Gene

Variant ID Type Subtype PubMed ID
esv2718258 CNV deletion 23290073
nsv1142254 CNV tandem duplication 24896259
nsv137994 CNV deletion 16902084
nsv479686 CNV novel sequence insertion 20440878
nsv960804 CNV duplication 23825009

Variation tolerance for TPM4 Gene

Residual Variation Intolerance Score: 36.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.15; 23.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TPM4 Gene

Human Gene Mutation Database (HGMD)
TPM4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPM4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TPM4 Gene

Disorders for TPM4 Gene

MalaCards: The human disease database

(3) MalaCards diseases for TPM4 Gene - From: HGMD, Orphanet, and DISEASES

Disorder Aliases PubMed IDs
inflammatory myofibroblastic tumor
  • inflammatory fibrosarcoma
autosomal dominant macrothrombocytopenia
mesenchymal cell neoplasm
  • benign miscellaneous mesenchymal tumor
- elite association - COSMIC cancer census association via MalaCards
Search TPM4 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TPM4

Genetic Association Database (GAD)
TPM4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPM4
genes like me logo Genes that share disorders with TPM4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TPM4 Gene

Publications for TPM4 Gene

  1. A systematic nomenclature for mammalian tropomyosin isoforms. (PMID: 25369766) Geeves MA … Gunning PW (Journal of muscle research and cell motility 2015) 2 3 60
  2. A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans. (PMID: 22423221) Qayyum R … Reiner AP (PLoS genetics 2012) 3 45 60
  3. New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C … Soranzo N (Nature 2011) 3 45 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60

Products for TPM4 Gene

Sources for TPM4 Gene

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