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Aliases for TPM3P9 Gene

Aliases for TPM3P9 Gene

  • Tropomyosin 3 Pseudogene 9 2 3 5

External Ids for TPM3P9 Gene

Previous GeneCards Identifiers for TPM3P9 Gene

  • GC19P053937

Summaries for TPM3P9 Gene

GeneCards Summary for TPM3P9 Gene

TPM3P9 (Tropomyosin 3 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPM3P9 Gene

Genomics for TPM3P9 Gene

Regulatory Elements for TPM3P9 Gene

Enhancers for TPM3P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F053864 1.5 FANTOM5 ENCODE 11.4 +436.9 436941 9.8 PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF845 ZNF765 ZNF816 ENSG00000235681 ZNF813 TPM3P6 LENG8-AS1 MYADM ZNF525 ZNF665
GH19F053364 1.1 ENCODE 11.5 -66.3 -66284 1.6 HDGF CREB3L1 ZFP64 ARID4B SIN3A DMAP1 KLF13 ZNF263 SP3 REST ZNF525 ZNF808 ZNF845 ENSG00000268970 ZNF137P ZNF765 ZNF816 ENSG00000269825 ZNF813 TPM3P6
GH19F053595 0.9 ENCODE 10.6 +161.2 161158 0.2 ARNT CREB3L1 GLI4 ZBTB40 RAD21 ZNF48 ZEB1 ZNF335 GLIS2 ZNF366 LENG8-AS1 ZNF525 PRPF31 ENSG00000235681 ZNF845 ZNF28 ZNF765 ZNF347 ENSG00000268970 ZNF665
GH19F054095 0.9 ENCODE 10.5 +664.6 664631 1.9 PKNOX1 CREB3L1 GLI4 ZNF48 RAD21 RARA GLIS2 ZNF366 THAP11 ZNF202 LENG8-AS1 ZNF525 PRPF31 ENSG00000235681 ZNF845 ZNF765 ZNF347 ZNF665 TPM3P6 ENSG00000237017
GH19F053389 0.8 ENCODE 11.6 -42.0 -42046 1.8 KLF1 SUZ12 CREB3L1 ZNF76 DEAF1 DIDO1 ZNF766 ZNF366 POLR2A ZNF143 ZNF808 ZNF765 ZNF525 ZNF813 ENSG00000268970 ZNF845 ZNF137P ZNF816 ENSG00000269825 TPM3P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPM3P9 on UCSC Golden Path with GeneCards custom track

Promoters for TPM3P9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001420051 426 2401 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 ZNF207 SP3 SP5 MXD4

Genomic Location for TPM3P9 Gene

53,431,974 bp from pter
53,444,672 bp from pter
12,699 bases
Plus strand

Genomic View for TPM3P9 Gene

Genes around TPM3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM3P9 Gene

Proteins for TPM3P9 Gene

Post-translational modifications for TPM3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPM3P9 Gene

Domains & Families for TPM3P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPM3P9 Gene

Function for TPM3P9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPM3P9 Gene

Localization for TPM3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPM3P9 Gene

Pathways & Interactions for TPM3P9 Gene

SuperPathways for TPM3P9 Gene

No Data Available

Interacting Proteins for TPM3P9 Gene

Gene Ontology (GO) - Biological Process for TPM3P9 Gene


No data available for Pathways by source and SIGNOR curated interactions for TPM3P9 Gene

Transcripts for TPM3P9 Gene

mRNA/cDNA for TPM3P9 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TPM3P9 Gene

No ASD Table

Relevant External Links for TPM3P9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TPM3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TPM3P9 Gene

mRNA differential expression in normal tissues according to GTEx for TPM3P9 Gene

This gene is overexpressed in Prostate (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of TPM3P9 Gene:

genes like me logo Genes that share expression patterns with TPM3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPM3P9 Gene

Orthologs for TPM3P9 Gene

Evolution for TPM3P9 Gene

Gene Tree for TPM3P9 (if available)
Gene Tree for TPM3P9 (if available)

No data available for Orthologs for TPM3P9 Gene

Paralogs for TPM3P9 Gene

No data available for Paralogs for TPM3P9 Gene

Variants for TPM3P9 Gene

Sequence variations from dbSNP and Humsavar for TPM3P9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10404405 -- 53,431,981(+) ATTCG(C/T)GCAGA nc-transcript-variant, utr-variant-5-prime
rs10418185 -- 53,434,307(+) atttt(A/G)ttgta intron-variant
rs10421016 -- 53,437,985(+) tcttc(C/T)agcac intron-variant
rs10421048 -- 53,438,066(+) ttggg(A/G)aatac intron-variant
rs10421072 -- 53,438,103(+) ggaga(A/G)gagct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPM3P9 Gene

Variant ID Type Subtype PubMed ID
dgv6535n54 CNV gain 21841781
dgv530e201 CNV deletion 23290073
dgv431n27 CNV gain 19166990
dgv3652n100 CNV gain 25217958
dgv3651n100 CNV gain 25217958
dgv3650n100 CNV gain+loss 25217958
dgv3649n100 CNV loss 25217958
dgv3648n100 CNV gain 25217958
dgv3647n100 CNV loss 25217958
dgv3646n100 CNV loss 25217958
dgv1071e212 CNV gain 25503493
esv3893241 CNV gain+loss 25118596
esv3644758 CNV gain 21293372
esv3644757 CNV loss 21293372
esv3644756 CNV gain 21293372
esv3583517 CNV loss 25503493
esv3556588 CNV deletion 23714750
esv3403561 CNV insertion 20981092
esv3310473 CNV novel sequence insertion 20981092
esv2762954 CNV gain+loss 21179565
esv2758770 CNV loss 17122850
esv2718823 CNV deletion 23290073
esv2718812 CNV deletion 23290073
esv2491793 CNV deletion 19546169
dgv88e19 CNV loss 19470904
dgv661e199 CNV deletion 23128226
dgv6539n54 CNV loss 21841781
dgv6538n54 CNV loss 21841781
dgv6537n54 CNV gain 21841781
dgv6536n54 CNV gain 21841781
nsv963077 CNV duplication 23825009
nsv956579 CNV deletion 24416366
nsv580101 CNV gain 21841781
nsv580097 CNV gain+loss 21841781
nsv580086 CNV loss 21841781
nsv580082 CNV loss 21841781
nsv521988 CNV loss 19592680
nsv515728 CNV gain+loss 19592680
nsv470156 CNV gain 18288195
nsv470154 CNV loss 18288195
nsv458768 CNV loss 19166990
nsv458767 CNV loss 19166990
nsv1160662 CNV deletion 26073780
nsv1059834 CNV gain 25217958
nsv1055773 CNV gain 25217958
esv8848 CNV loss 19470904
esv3893243 CNV gain 25118596
esv3893242 CNV loss 25118596

Relevant External Links for TPM3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPM3P9 Gene

Disorders for TPM3P9 Gene

Relevant External Links for TPM3P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TPM3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPM3P9 Gene

Publications for TPM3P9 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TPM3P9 Gene

Sources for TPM3P9 Gene

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