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Aliases for TPM3P9 Gene

Aliases for TPM3P9 Gene

  • Tropomyosin 3 Pseudogene 9 2 3 5

External Ids for TPM3P9 Gene

Previous GeneCards Identifiers for TPM3P9 Gene

  • GC19P053937

Summaries for TPM3P9 Gene

GeneCards Summary for TPM3P9 Gene

TPM3P9 (Tropomyosin 3 Pseudogene 9) is a Pseudogene.

Additional gene information for TPM3P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPM3P9 Gene

Genomics for TPM3P9 Gene

Regulatory Elements for TPM3P9 Gene

Enhancers for TPM3P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H054199 1.9 FANTOM5 ENCODE dbSUPER 12 +773.7 773737 12.1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D PRPF31 CNOT3 LENG8 LENG8-AS1 ZNF525 LILRB5 ZNF845 ZNF765 ENSG00000235681 RPS9
GH19H053864 1.8 FANTOM5 ENCODE dbSUPER 11.4 +436.9 436941 9.8 HDGF FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZBTB7B SLC30A9 FOS ENSG00000269001 ZNF845 ZNF765 ZNF816 LENG8 ENSG00000235681 ZNF813 TPM3P6 ZNF160 LENG8-AS1
GH19H053430 1 ENCODE 18.8 +0.1 75 2.4 PKNOX1 ATF1 FOXA2 ARID4B SIN3A DMAP1 YY1 SLC30A9 GLIS2 ZNF207 ZNF761 ZNF160 ZNF808 TPM3P9 TPM3P6 ZNF137P ENSG00000268970 ZNF701 ZNF611 ENSG00000269001
GH19H052733 1.4 FANTOM5 ENCODE 13.3 -696.7 -696705 2.8 HDGF ARID4B SIN3A ELK1 ATF7 SP3 SP5 REST ZNF518A ZNF592 ZNF611 ZNF613 ZNF137P ENSG00000268970 ZNF701 ENSG00000269001 TPM3P9 ZNF525 ZNF665 TPM3P6
GH19H053977 1.3 Ensembl ENCODE 13.3 +548.0 547988 5.8 HDGF PKNOX1 SIN3A FEZF1 ZNF2 ZNF766 ZNF143 SP3 NFYC REST PRPF31 ZNF525 LENG8-AS1 ZNF160 ZNF845 ZNF665 ZNF761 ZNF347 LENG8 ENSG00000235681
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPM3P9 on UCSC Golden Path with GeneCards custom track

Promoters for TPM3P9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111371 226 2001 PKNOX1 ATF1 FOXA2 ARID4B SIN3A DMAP1 SLC30A9 ZNF207 ATF7 SP3

Genomic Locations for TPM3P9 Gene

Genomic Locations for TPM3P9 Gene
chr19:53,431,974-53,444,672
(GRCh38/hg38)
Size:
12,699 bases
Orientation:
Plus strand
chr19:53,935,227-53,947,925
(GRCh37/hg19)

Genomic View for TPM3P9 Gene

Genes around TPM3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM3P9 Gene

Proteins for TPM3P9 Gene

Post-translational modifications for TPM3P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPM3P9 Gene

Domains & Families for TPM3P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPM3P9 Gene

Function for TPM3P9 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPM3P9 Gene

Localization for TPM3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPM3P9 Gene

Pathways & Interactions for TPM3P9 Gene

SuperPathways for TPM3P9 Gene

No Data Available

Interacting Proteins for TPM3P9 Gene

Gene Ontology (GO) - Biological Process for TPM3P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPM3P9 Gene

Drugs & Compounds for TPM3P9 Gene

No Compound Related Data Available

Transcripts for TPM3P9 Gene

mRNA/cDNA for TPM3P9 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPM3P9 Gene

No ASD Table

Relevant External Links for TPM3P9 Gene

GeneLoc Exon Structure for
TPM3P9
ECgene alternative splicing isoforms for
TPM3P9

Expression for TPM3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPM3P9 Gene

mRNA differential expression in normal tissues according to GTEx for TPM3P9 Gene

This gene is overexpressed in Prostate (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of TPM3P9 Gene:

TPM3P9
genes like me logo Genes that share expression patterns with TPM3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPM3P9 Gene

Orthologs for TPM3P9 Gene

Evolution for TPM3P9 Gene

ENSEMBL:
Gene Tree for TPM3P9 (if available)
TreeFam:
Gene Tree for TPM3P9 (if available)

No data available for Orthologs for TPM3P9 Gene

Paralogs for TPM3P9 Gene

No data available for Paralogs for TPM3P9 Gene

Variants for TPM3P9 Gene

Sequence variations from dbSNP and Humsavar for TPM3P9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000025290 -- 53,441,829(+) AGGAG(A/G)AACCG intron-variant, nc-transcript-variant
rs1001079638 -- 53,433,190(+) GATTT(A/T)CATCT intron-variant
rs1001706192 -- 53,431,228(+) AAATA(A/G)AAGAA upstream-variant-2KB
rs1002052085 -- 53,431,447(+) TCTCG(C/T)CGCTG upstream-variant-2KB
rs1002085422 -- 53,434,028(+) AATCT(A/G)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPM3P9 Gene

Variant ID Type Subtype PubMed ID
nsv963077 CNV duplication 23825009
nsv956579 CNV deletion 24416366
nsv580101 CNV gain 21841781
nsv580097 CNV gain+loss 21841781
nsv580086 CNV loss 21841781
nsv580082 CNV loss 21841781
nsv521988 CNV loss 19592680
nsv515728 CNV gain+loss 19592680
nsv470156 CNV gain 18288195
nsv470154 CNV loss 18288195
nsv458768 CNV loss 19166990
nsv458767 CNV loss 19166990
nsv1160662 CNV deletion 26073780
nsv1059834 CNV gain 25217958
nsv1055773 CNV gain 25217958
esv8848 CNV loss 19470904
esv3893243 CNV gain 25118596
esv3893242 CNV loss 25118596
esv3893241 CNV gain+loss 25118596
esv3644758 CNV gain 21293372
esv3644757 CNV loss 21293372
esv3644756 CNV gain 21293372
esv3583517 CNV loss 25503493
esv3556588 CNV deletion 23714750
esv3403561 CNV insertion 20981092
esv3310473 CNV novel sequence insertion 20981092
esv2762954 CNV gain+loss 21179565
esv2758770 CNV loss 17122850
esv2718823 CNV deletion 23290073
esv2718812 CNV deletion 23290073
esv2491793 CNV deletion 19546169
dgv88e19 CNV loss 19470904
dgv661e199 CNV deletion 23128226
dgv6539n54 CNV loss 21841781
dgv6538n54 CNV loss 21841781
dgv6537n54 CNV gain 21841781
dgv6536n54 CNV gain 21841781
dgv6535n54 CNV gain 21841781
dgv530e201 CNV deletion 23290073
dgv431n27 CNV gain 19166990
dgv3652n100 CNV gain 25217958
dgv3651n100 CNV gain 25217958
dgv3650n100 CNV gain+loss 25217958
dgv3649n100 CNV loss 25217958
dgv3648n100 CNV gain 25217958
dgv3647n100 CNV loss 25217958
dgv3646n100 CNV loss 25217958
dgv1071e212 CNV gain 25503493

Relevant External Links for TPM3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPM3P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPM3P9 Gene

Disorders for TPM3P9 Gene

Relevant External Links for TPM3P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPM3P9

No disorders were found for TPM3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPM3P9 Gene

Publications for TPM3P9 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for TPM3P9 Gene

Sources for TPM3P9 Gene

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