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Aliases for TPM3P1 Gene

Aliases for TPM3P1 Gene

  • Tropomyosin 3 Pseudogene 1 2 3 5
  • Tropomyosin 3-Like 2 Pseudogene 2 3
  • Tropomyosin 3-Like 2 2
  • TPM3L2 3

External Ids for TPM3P1 Gene

Previous HGNC Symbols for TPM3P1 Gene

  • TPM3L2

Previous GeneCards Identifiers for TPM3P1 Gene

  • GC07M116611

Summaries for TPM3P1 Gene

GeneCards Summary for TPM3P1 Gene

TPM3P1 (Tropomyosin 3 Pseudogene 1) is a Pseudogene.

Additional gene information for TPM3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPM3P1 Gene

Genomics for TPM3P1 Gene

Regulatory Elements for TPM3P1 Gene

Enhancers for TPM3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H116969 1 Ensembl ENCODE 0.7 +2.5 2466 1 HDGF PKNOX1 BACH1 BATF ZNF316 EED ATF7 NFE2 RUNX3 IKZF2 TPM3P1 ENSG00000228368
GH07H116971 0.7 ENCODE 0.7 +1.0 964 0 HDGF SP5 THRB RARA IKZF1 ID3 NR2C1 NR2F6 SMAD4 MLLT1 ENSG00000228368 TPM3P1
GH07H117011 1.2 FANTOM5 ENCODE 0.3 -39.1 -39117 0 HDGF PKNOX1 BMI1 BATF EGR1 SCRT2 ATF7 ETV6 RUNX3 IKZF2 ENSG00000228368 CAV1 MIR6132 TPM3P1
GH07H117013 1 ENCODE 0.3 -42.0 -41964 2 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 RUNX3 GTF2B NCOA1 ENSG00000228368 MIR6132 TPM3P1
GH07H116984 0.7 ENCODE 0.4 -12.0 -12017 0 CTCF FOXA2 CEBPG ZNF2 RAD21 RFX5 FOXK2 SMC3 ZNF654 HLF TPM3P1 MIR6132
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPM3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPM3P1 Gene

Chromosome:
7
Start:
116,970,897 bp from pter
End:
116,972,985 bp from pter
Size:
2,089 bases
Orientation:
Minus strand

Genomic View for TPM3P1 Gene

Genes around TPM3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPM3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPM3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPM3P1 Gene

Proteins for TPM3P1 Gene

Post-translational modifications for TPM3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPM3P1 Gene

Domains & Families for TPM3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPM3P1 Gene

Function for TPM3P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TPM3P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPM3P1 Gene

Localization for TPM3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPM3P1 Gene

Pathways & Interactions for TPM3P1 Gene

SuperPathways for TPM3P1 Gene

No Data Available

Interacting Proteins for TPM3P1 Gene

Gene Ontology (GO) - Biological Process for TPM3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPM3P1 Gene

Drugs & Compounds for TPM3P1 Gene

No Compound Related Data Available

Transcripts for TPM3P1 Gene

mRNA/cDNA for TPM3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TPM3P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TPM3P1 Gene

No ASD Table

Relevant External Links for TPM3P1 Gene

GeneLoc Exon Structure for
TPM3P1
ECgene alternative splicing isoforms for
TPM3P1

Expression for TPM3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPM3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TPM3P1 Gene:

TPM3P1
genes like me logo Genes that share expression patterns with TPM3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPM3P1 Gene

Orthologs for TPM3P1 Gene

Evolution for TPM3P1 Gene

ENSEMBL:
Gene Tree for TPM3P1 (if available)
TreeFam:
Gene Tree for TPM3P1 (if available)

No data available for Orthologs for TPM3P1 Gene

Paralogs for TPM3P1 Gene

No data available for Paralogs for TPM3P1 Gene

Variants for TPM3P1 Gene

Relevant External Links for TPM3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPM3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TPM3P1 Gene

Disorders for TPM3P1 Gene

No disorders were found for TPM3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TPM3P1 Gene

Publications for TPM3P1 Gene

  1. The mRNA and RNA-copy pseudogenes encoding TM30nm, a human cytoskeletal tropomyosin. (PMID: 3024106) MacLeod AR … Talbot K (Nucleic acids research 1986) 2 3 60
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 60
  3. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. (PMID: 12213198) Vincent JB … Scherer SW (Genomics 2002) 3 60

Products for TPM3P1 Gene

Sources for TPM3P1 Gene

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