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Aliases for TPI1P3 Gene

Subcategory (RNA class) for TPI1P3 Gene

antisense

Aliases for TPI1P3 Gene

  • Triosephosphate Isomerase 1 Pseudogene 3 2 3 5

External Ids for TPI1P3 Gene

ORGUL Members for TPI1P3 Gene

Previous GeneCards Identifiers for TPI1P3 Gene

  • GC06P116360
  • GC06P113939

Summaries for TPI1P3 Gene

GeneCards Summary for TPI1P3 Gene

TPI1P3 (Triosephosphate Isomerase 1 Pseudogene 3) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPI1P3 Gene

Genomics for TPI1P3 Gene

Regulatory Elements for TPI1P3 Gene

Enhancers for TPI1P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F116679 0.8 FANTOM5 ENCODE 16.2 +642.9 642855 3.2 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TPI1P3 ENSG00000226181 ENSG00000240050 DSE RWDD1 ENSG00000237021 FAM26F KPNA5 ZUFSP TSPYL1
GH06F116034 0.5 Ensembl 0.8 -4.6 -4631 0.2 BACH1 FRK TPI1P3 PIR54414
GH06F116023 0.5 FANTOM5 0.4 -14.8 -14791 0.1 FRK TPI1P3 PIR54414
GH06F116015 1.1 Ensembl ENCODE 0.3 -22.0 -21974 3.3 SOX13 PKNOX1 TFAP4 SAP130 ZNF644 RELA CREM MAFK THAP11 GATAD2A FRK NT5DC1 FAM26F TPI1P3 PIR54414
GH06F116019 0.8 ENCODE 0.3 -19.1 -19059 0.2 PKNOX1 ZNF146 BMI1 EBF1 RELA EED CREM MTA2 BHLHE40 TRIM22 FRK TPI1P3 PIR54414
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TPI1P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPI1P3 Gene

Chromosome:
6
Start:
116,038,731 bp from pter
End:
116,039,944 bp from pter
Size:
1,214 bases
Orientation:
Plus strand

Genomic View for TPI1P3 Gene

Genes around TPI1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPI1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPI1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPI1P3 Gene

Proteins for TPI1P3 Gene

Post-translational modifications for TPI1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPI1P3 Gene

Domains & Families for TPI1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPI1P3 Gene

Function for TPI1P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPI1P3 Gene

Localization for TPI1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPI1P3 Gene

Pathways & Interactions for TPI1P3 Gene

SuperPathways for TPI1P3 Gene

No Data Available

Interacting Proteins for TPI1P3 Gene

Gene Ontology (GO) - Biological Process for TPI1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPI1P3 Gene

Transcripts for TPI1P3 Gene

mRNA/cDNA for TPI1P3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPI1P3 Gene

Triosephosphate isomerase 1 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPI1P3 Gene

No ASD Table

Relevant External Links for TPI1P3 Gene

GeneLoc Exon Structure for
TPI1P3
ECgene alternative splicing isoforms for
TPI1P3

Expression for TPI1P3 Gene

mRNA expression in normal human tissues for TPI1P3 Gene

mRNA differential expression in normal tissues according to GTEx for TPI1P3 Gene

This gene is overexpressed in Testis (x41.5).

NURSA nuclear receptor signaling pathways regulating expression of TPI1P3 Gene:

TPI1P3

SOURCE GeneReport for Unigene cluster for TPI1P3 Gene:

Hs.729953
genes like me logo Genes that share expression patterns with TPI1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPI1P3 Gene

Orthologs for TPI1P3 Gene

Evolution for TPI1P3 Gene

ENSEMBL:
Gene Tree for TPI1P3 (if available)
TreeFam:
Gene Tree for TPI1P3 (if available)

No data available for Orthologs for TPI1P3 Gene

Paralogs for TPI1P3 Gene

No data available for Paralogs for TPI1P3 Gene

Variants for TPI1P3 Gene

Sequence variations from dbSNP and Humsavar for TPI1P3 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111920010 -- 116,037,820(+) TTCTT(-/TGTC)TTTGA intron-variant, upstream-variant-2KB
rs1133562 -- 116,039,941(+) CTGGC(A/C)CTAGG intron-variant, nc-transcript-variant
rs114410491 -- 116,037,203(+) AAAGA(C/T)TTTTT intron-variant, upstream-variant-2KB
rs115469859 -- 116,036,789(+) TGTAA(A/T)TTAAA intron-variant, upstream-variant-2KB
rs138246757 -- 116,037,849(+) TATTT(A/C)TCCTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TPI1P3 Gene

Variant ID Type Subtype PubMed ID
nsv1029998 CNV loss 25217958
nsv523972 CNV gain 19592680
nsv981177 CNV duplication 23825009

Relevant External Links for TPI1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPI1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPI1P3 Gene

Disorders for TPI1P3 Gene

Relevant External Links for TPI1P3

Genetic Association Database (GAD)
TPI1P3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPI1P3

No disorders were found for TPI1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPI1P3 Gene

Publications for TPI1P3 Gene

  1. Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration. (PMID: 21665990) Yu Y. … Seddon J.M. (Hum. Mol. Genet. 2011) 46 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for TPI1P3 Gene

Sources for TPI1P3 Gene

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