Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TPI1P3 Gene

Subcategory (RNA class) for TPI1P3 Gene

antisense

Aliases for TPI1P3 Gene

  • Triosephosphate Isomerase 1 Pseudogene 3 2 3 5

External Ids for TPI1P3 Gene

ORGUL Members for TPI1P3 Gene

Previous GeneCards Identifiers for TPI1P3 Gene

  • GC06P116360
  • GC06P113939

Summaries for TPI1P3 Gene

GeneCards Summary for TPI1P3 Gene

TPI1P3 (Triosephosphate Isomerase 1 Pseudogene 3) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for TPI1P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPI1P3 Gene

Genomics for TPI1P3 Gene

GeneHancer (GH) Regulatory Elements for TPI1P3 Gene

Promoters and enhancers for TPI1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I116010 Enhancer 1.1 Ensembl ENCODE 0.3 -26.3 -26309 3 FOXA2 SMAD1 ARID4B IRF4 YY1 ZNF143 ATF7 FOS RUNX3 RXRA FRK TPI1P3 PIR54414
GH06I116034 Enhancer 0.4 Ensembl 0.8 -4.6 -4630 0.2 RXRA BACH1 FRK TPI1P3 PIR54414
GH06I116019 Enhancer 0.7 ENCODE 0.4 -19.1 -19058 0.2 PKNOX1 BACH1 EBF1 BMI1 BATF RELA ATF7 IKZF2 RUNX3 NR2F1 FRK TPI1P3 PIR54414
GH06I116015 Enhancer 0.9 Ensembl ENCODE 0.3 -22.0 -21974 3.3 SOX13 PKNOX1 TFAP4 FOXA2 SAP130 EBF1 ZNF644 ETS1 RELA NFATC1 FRK NT5DC1 CALHM6 TPI1P3 PIR54414
GH06I116008 Enhancer 0.9 Ensembl ENCODE 0.3 -29.8 -29805 1.6 MEIS2 ZNF687 PKNOX1 HLF TRIM22 CEBPG FEZF1 SP1 ZNF664 ATF3 FRK TPI1P3 PIR54414
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPI1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPI1P3 Gene

Genomic Locations for TPI1P3 Gene
chr6:116,038,731-116,039,944
(GRCh38/hg38)
Size:
1,214 bases
Orientation:
Plus strand
chr6:116,359,894-116,361,107
(GRCh37/hg19)

Genomic View for TPI1P3 Gene

Genes around TPI1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPI1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPI1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPI1P3 Gene

Proteins for TPI1P3 Gene

Post-translational modifications for TPI1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPI1P3 Gene

Domains & Families for TPI1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPI1P3 Gene

Function for TPI1P3 Gene

Phenotypes From GWAS Catalog for TPI1P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPI1P3 Gene

Localization for TPI1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPI1P3 Gene

Pathways & Interactions for TPI1P3 Gene

SuperPathways for TPI1P3 Gene

No Data Available

Interacting Proteins for TPI1P3 Gene

Gene Ontology (GO) - Biological Process for TPI1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPI1P3 Gene

Drugs & Compounds for TPI1P3 Gene

No Compound Related Data Available

Transcripts for TPI1P3 Gene

mRNA/cDNA for TPI1P3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPI1P3 Gene

Triosephosphate isomerase 1 pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPI1P3 Gene

No ASD Table

Relevant External Links for TPI1P3 Gene

GeneLoc Exon Structure for
TPI1P3
ECgene alternative splicing isoforms for
TPI1P3

Expression for TPI1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPI1P3 Gene

mRNA differential expression in normal tissues according to GTEx for TPI1P3 Gene

This gene is overexpressed in Testis (x41.5).

NURSA nuclear receptor signaling pathways regulating expression of TPI1P3 Gene:

TPI1P3

SOURCE GeneReport for Unigene cluster for TPI1P3 Gene:

Hs.729953
genes like me logo Genes that share expression patterns with TPI1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPI1P3 Gene

Orthologs for TPI1P3 Gene

Evolution for TPI1P3 Gene

ENSEMBL:
Gene Tree for TPI1P3 (if available)
TreeFam:
Gene Tree for TPI1P3 (if available)

No data available for Orthologs for TPI1P3 Gene

Paralogs for TPI1P3 Gene

No data available for Paralogs for TPI1P3 Gene

Variants for TPI1P3 Gene

Sequence variations from dbSNP and Humsavar for TPI1P3 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1005195731 -- 116,037,785(+) C/T upstream_transcript_variant
rs1005298757 -- 116,037,034(+) A/G upstream_transcript_variant
rs1005732711 -- 116,037,340(+) A/C upstream_transcript_variant
rs1007399772 -- 116,038,226(+) C/T upstream_transcript_variant
rs1007450380 -- 116,038,719(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TPI1P3 Gene

Variant ID Type Subtype PubMed ID
nsv1029998 CNV loss 25217958
nsv523972 CNV gain 19592680
nsv981177 CNV duplication 23825009

Additional Variant Information for TPI1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPI1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPI1P3 Gene

Disorders for TPI1P3 Gene

Additional Disease Information for TPI1P3

No disorders were found for TPI1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPI1P3 Gene

Publications for TPI1P3 Gene

  1. Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration. (PMID: 21665990) Yu Y … Seddon JM (Human molecular genetics 2011) 44 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for TPI1P3 Gene

Sources for TPI1P3 Gene

Content
Loading form....