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Aliases for TPI1P2 Gene

Aliases for TPI1P2 Gene

  • Triosephosphate Isomerase 1 Pseudogene 2 2 3 5

External Ids for TPI1P2 Gene

Previous GeneCards Identifiers for TPI1P2 Gene

  • GC07P128695
  • GC07P123056

Summaries for TPI1P2 Gene

GeneCards Summary for TPI1P2 Gene

TPI1P2 (Triosephosphate Isomerase 1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPI1P2 Gene

Genomics for TPI1P2 Gene

Regulatory Elements for TPI1P2 Gene

Enhancers for TPI1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G128960 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -92.7 -92662 3.3 PKNOX1 RELA ZNF664 CTBP1 EGR1 FOS ZNF600 RELB IKZF2 MTA2 IRF5 TNPO3 TPI1P2 ENSG00000242162 ATP6V1F TSPAN33 ENSG00000275106 RN7SL306P
GH07G128932 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -120.8 -120783 3.3 HDGF TBP PKNOX1 WRNIP1 SIN3A ZBTB40 ZNF143 RELB ETV6 IKZF2 IRF5 ATP6V1F KCP ENSG00000242162 FLNC FLNC-AS1 TSPAN33 TNPO3 TPI1P2 LOC392787
GH07G129122 1.5 FANTOM5 ENCODE dbSUPER 11.3 +67.6 67603 1.6 TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 YBX1 CBX5 ZNF207 RCOR1 RELB TNPO3 TSPAN33 ENSG00000242162 TPI1P2 ENSG00000243230 AHCYL2 ATP6V1F NRF1 CYCSP20 LOC407835
GH07G129099 1.3 Ensembl ENCODE 11.8 +46.8 46822 4.4 HDGF HNRNPUL1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF766 TSPAN33 TNPO3 ENSG00000242162 TPI1P2 ENSG00000243679 ENSG00000230715 ENSG00000243302 RBM28 ENSG00000242588 FLNC-AS1
GH07G129134 1.4 Ensembl ENCODE dbSUPER 10.4 +81.1 81132 3.9 PKNOX1 FOXA2 CBX3 ARNT SIN3A NFXL1 THRB ZBTB40 RARA ZEB1 TNPO3 TPI1P2 TSPAN33 IRF5 LOC407835
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPI1P2 on UCSC Golden Path with GeneCards custom track

Promoters for TPI1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000217812 -423 2401 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21

Genomic Location for TPI1P2 Gene

Chromosome:
7
Start:
129,055,223 bp from pter
End:
129,057,239 bp from pter
Size:
2,017 bases
Orientation:
Plus strand

Genomic View for TPI1P2 Gene

Genes around TPI1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPI1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPI1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPI1P2 Gene

Proteins for TPI1P2 Gene

Post-translational modifications for TPI1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPI1P2 Gene

Domains & Families for TPI1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPI1P2 Gene

Function for TPI1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPI1P2 Gene

Localization for TPI1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPI1P2 Gene

Pathways & Interactions for TPI1P2 Gene

SuperPathways for TPI1P2 Gene

No Data Available

Interacting Proteins for TPI1P2 Gene

Gene Ontology (GO) - Biological Process for TPI1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPI1P2 Gene

Drugs & Compounds for TPI1P2 Gene

No Compound Related Data Available

Transcripts for TPI1P2 Gene

mRNA/cDNA for TPI1P2 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPI1P2 Gene

Triosephosphate isomerase 1 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPI1P2 Gene

No ASD Table

Relevant External Links for TPI1P2 Gene

GeneLoc Exon Structure for
TPI1P2
ECgene alternative splicing isoforms for
TPI1P2

Expression for TPI1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPI1P2 Gene

mRNA differential expression in normal tissues according to GTEx for TPI1P2 Gene

This gene is overexpressed in Testis (x10.8).

NURSA nuclear receptor signaling pathways regulating expression of TPI1P2 Gene:

TPI1P2

SOURCE GeneReport for Unigene cluster for TPI1P2 Gene:

Hs.369665
genes like me logo Genes that share expression patterns with TPI1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPI1P2 Gene

Orthologs for TPI1P2 Gene

Evolution for TPI1P2 Gene

ENSEMBL:
Gene Tree for TPI1P2 (if available)
TreeFam:
Gene Tree for TPI1P2 (if available)

No data available for Orthologs for TPI1P2 Gene

Paralogs for TPI1P2 Gene

No data available for Paralogs for TPI1P2 Gene

Variants for TPI1P2 Gene

Sequence variations from dbSNP and Humsavar for TPI1P2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs794726936 Uncertain significance 129,054,727(-) GGCAG(C/T)GCAGG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs886044400 Uncertain significance 129,054,769(+) CTTCC(A/G)TGGTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs201636723 Benign 129,054,779(+) GGTGG(C/T)GGTAG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000894430 -- 129,053,617(+) GCAGA(A/G)CACCT intron-variant, upstream-variant-2KB
rs1001306307 -- 129,054,918(+) GGCAG(A/G)AGGCT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TPI1P2 Gene

Variant ID Type Subtype PubMed ID
nsv507416 OTHER sequence alteration 20534489
nsv981578 CNV duplication 23825009

Relevant External Links for TPI1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPI1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPI1P2 Gene

Disorders for TPI1P2 Gene

Relevant External Links for TPI1P2

Genetic Association Database (GAD)
TPI1P2
Human Genome Epidemiology (HuGE) Navigator
TPI1P2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPI1P2

No disorders were found for TPI1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPI1P2 Gene

Publications for TPI1P2 Gene

  1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M. … Tokunaga K. (Hum. Genet. 2010) 3 46 64
  2. A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. (PMID: 23740937) Martin J.E. … Martin J. (Hum. Mol. Genet. 2013) 3 64
  3. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) Harley J.B. … Kelly J.A. (Nat. Genet. 2008) 46 64
  4. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick J.C. … Traynor B.J. (Lancet Neurol 2007) 46 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TPI1P2 Gene

Sources for TPI1P2 Gene

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