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Aliases for TPI1P2 Gene

Aliases for TPI1P2 Gene

  • Triosephosphate Isomerase 1 Pseudogene 2 2 3 5

External Ids for TPI1P2 Gene

Previous GeneCards Identifiers for TPI1P2 Gene

  • GC07P128695
  • GC07P123056

Summaries for TPI1P2 Gene

GeneCards Summary for TPI1P2 Gene

TPI1P2 (Triosephosphate Isomerase 1 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPI1P2 Gene

Genomics for TPI1P2 Gene

Regulatory Elements for TPI1P2 Gene

Enhancers for TPI1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F129121 1.5 FANTOM5 Ensembl ENCODE 11.3 +67.7 67658 2.1 TBP PKNOX1 CBX3 TBL1XR1 WRNIP1 YBX1 BMI1 CBX5 ZNF143 ZNF207 TNPO3 ENSG00000243230 TSPAN33 SMO ENSG00000242162 RBM28 TPI1P2 AHCYL2 ATP6V1F NRF1
GH07F128932 1.5 FANTOM5 Ensembl ENCODE 10.4 -120.9 -120931 3.6 HDGF TBP PKNOX1 WRNIP1 SIN3A ZBTB40 ZNF143 ETV6 CREM SMAD5 IRF5 ATP6V1F KCP ENSG00000242162 FLNC ENSG00000242902 TSPAN33 TNPO3 TPI1P2 LOC392787
GH07F129099 1.3 Ensembl ENCODE 11.8 +46.8 46822 4.4 HDGF ARNT MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF766 TSPAN33 ENSG00000242162 TNPO3 TPI1P2 ATP6V1F ENSG00000242902 ENSG00000243230 AHCYL2 ENSG00000241573 CYCSP20
GH07F128960 1.3 FANTOM5 Ensembl ENCODE 11.7 -92.7 -92662 3.3 PKNOX1 MTA2 USF2 JUNB YBX1 TBX21 EP300 RELA ZNF664 RAD51 IRF5 TNPO3 TPI1P2 ENSG00000242162 ATP6V1F TSPAN33 ENSG00000275106 RN7SL306P
GH07F129091 1.2 Ensembl ENCODE 11.5 +36.4 36399 1.0 HDGF PKNOX1 ARNT ARID4B GATA2 ELK1 ZNF143 DEK REST ZNF518A SMO TNPO3 ENSG00000243230 TSPAN33 TPI1P2 RBM28 IRF5 ENSG00000241102 ENSG00000242162
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPI1P2 on UCSC Golden Path with GeneCards custom track

Promoters for TPI1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000313042 -423 3201 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21

Genomic Location for TPI1P2 Gene

Chromosome:
7
Start:
129,055,223 bp from pter
End:
129,057,239 bp from pter
Size:
2,017 bases
Orientation:
Plus strand

Genomic View for TPI1P2 Gene

Genes around TPI1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPI1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPI1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPI1P2 Gene

Proteins for TPI1P2 Gene

Post-translational modifications for TPI1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPI1P2 Gene

Domains & Families for TPI1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPI1P2 Gene

Function for TPI1P2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPI1P2 Gene

Localization for TPI1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TPI1P2 Gene

Pathways & Interactions for TPI1P2 Gene

SuperPathways for TPI1P2 Gene

No Data Available

Interacting Proteins for TPI1P2 Gene

Gene Ontology (GO) - Biological Process for TPI1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPI1P2 Gene

Transcripts for TPI1P2 Gene

mRNA/cDNA for TPI1P2 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPI1P2 Gene

Triosephosphate isomerase 1 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPI1P2 Gene

No ASD Table

Relevant External Links for TPI1P2 Gene

GeneLoc Exon Structure for
TPI1P2
ECgene alternative splicing isoforms for
TPI1P2

Expression for TPI1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TPI1P2 Gene

mRNA differential expression in normal tissues according to GTEx for TPI1P2 Gene

This gene is overexpressed in Testis (x10.8).

NURSA nuclear receptor signaling pathways regulating expression of TPI1P2 Gene:

TPI1P2

SOURCE GeneReport for Unigene cluster for TPI1P2 Gene:

Hs.369665
genes like me logo Genes that share expression patterns with TPI1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TPI1P2 Gene

Orthologs for TPI1P2 Gene

Evolution for TPI1P2 Gene

ENSEMBL:
Gene Tree for TPI1P2 (if available)
TreeFam:
Gene Tree for TPI1P2 (if available)

No data available for Orthologs for TPI1P2 Gene

Paralogs for TPI1P2 Gene

No data available for Paralogs for TPI1P2 Gene

Variants for TPI1P2 Gene

Sequence variations from dbSNP and Humsavar for TPI1P2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs794726936 Uncertain significance 129,054,727(-) GGCAG(C/T)GCAGG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs10266077 -- 129,054,467(+) CGACC(C/G)ATCAG intron-variant, upstream-variant-2KB
rs1055802 -- 129,057,409(+) ACAAC(A/T)TGATG downstream-variant-500B
rs111381973 -- 129,056,629(+) GCTCA(A/C/G)AGCAC nc-transcript-variant, upstream-variant-2KB
rs111819022 -- 129,054,136(+) CATGA(A/G)TAAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TPI1P2 Gene

Variant ID Type Subtype PubMed ID
nsv507416 OTHER sequence alteration 20534489
nsv981578 CNV duplication 23825009

Relevant External Links for TPI1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPI1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPI1P2 Gene

Disorders for TPI1P2 Gene

Relevant External Links for TPI1P2

Genetic Association Database (GAD)
TPI1P2
Human Genome Epidemiology (HuGE) Navigator
TPI1P2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPI1P2

No disorders were found for TPI1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPI1P2 Gene

Publications for TPI1P2 Gene

  1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M. … Tokunaga K. (Hum. Genet. 2010) 3 46 64
  2. A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. (PMID: 23740937) Martin J.E. … Martin J. (Hum. Mol. Genet. 2013) 3 64
  3. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) Harley J.B. … Kelly J.A. (Nat. Genet. 2008) 46 64
  4. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick J.C. … Traynor B.J. (Lancet Neurol 2007) 46 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for TPI1P2 Gene

Sources for TPI1P2 Gene

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