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Aliases for TPI1P2 Gene

Aliases for TPI1P2 Gene

  • Triosephosphate Isomerase 1 Pseudogene 2 2 3 5

External Ids for TPI1P2 Gene

Previous GeneCards Identifiers for TPI1P2 Gene

  • GC07P128695
  • GC07P123056

Summaries for TPI1P2 Gene

GeneCards Summary for TPI1P2 Gene

TPI1P2 (Triosephosphate Isomerase 1 Pseudogene 2) is a Pseudogene.

Additional gene information for TPI1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPI1P2 Gene

Genomics for TPI1P2 Gene

Regulatory Elements for TPI1P2 Gene

Enhancers for TPI1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H128932 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -120.8 -120783 3 HDGF PKNOX1 SIN3A BATF ZNF143 ATF7 ETV6 RUNX3 CREM IKZF2 IRF5 ATP6V1F KCP ENSG00000242162 FLNC FLNC-AS1 TSPAN33 TNPO3 TPI1P2 LOC392787
GH07H128960 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -92.7 -92662 3 PKNOX1 RB1 EBF1 BATF RELA CTBP1 FOS RUNX3 IKZF2 CHD2 IRF5 TNPO3 TPI1P2 ENSG00000242162 ATP6V1F TSPAN33 ENSG00000275106 RN7SL306P
GH07H129122 1.5 FANTOM5 ENCODE dbSUPER 11.4 +67.6 67603 1 PKNOX1 TBL1XR1 BMI1 YBX1 BATF ZNF207 ATF7 ETV6 RUNX3 CREM TNPO3 TSPAN33 ENSG00000242162 TPI1P2 ENSG00000243230 AHCYL2 ATP6V1F NRF1 CYCSP20 LOC407835
GH07H129099 1.2 Ensembl ENCODE 11.8 +46.8 46822 4 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 REST MIER2 PPARG KAT8 TSPAN33 ENSG00000242162 TNPO3 TPI1P2 ATP6V1F FLNC-AS1 ENSG00000243230 AHCYL2 ENSG00000241573 CYCSP20
GH07H129091 1.2 Ensembl ENCODE 11.5 +36.4 36399 0 HDGF FOXA2 ARNT ARID4B ELK1 ZNF143 RUNX3 DEK ZC3H11A REST TNPO3 SMO TSPAN33 TPI1P2 IRF5 ENSG00000241102 ENSG00000242162
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TPI1P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TPI1P2 Gene

Chromosome:
7
Start:
129,055,223 bp from pter
End:
129,057,239 bp from pter
Size:
2,017 bases
Orientation:
Plus strand

Genomic View for TPI1P2 Gene

Genes around TPI1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPI1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPI1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPI1P2 Gene

Proteins for TPI1P2 Gene

Post-translational modifications for TPI1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPI1P2 Gene

Domains & Families for TPI1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPI1P2 Gene

Function for TPI1P2 Gene

Phenotypes From GWAS Catalog for TPI1P2 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TPI1P2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPI1P2 Gene

Localization for TPI1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPI1P2 Gene

Pathways & Interactions for TPI1P2 Gene

SuperPathways for TPI1P2 Gene

No Data Available

Interacting Proteins for TPI1P2 Gene

Gene Ontology (GO) - Biological Process for TPI1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPI1P2 Gene

Drugs & Compounds for TPI1P2 Gene

No Compound Related Data Available

Transcripts for TPI1P2 Gene

mRNA/cDNA for TPI1P2 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPI1P2 Gene

Triosephosphate isomerase 1 pseudogene 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TPI1P2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TPI1P2 Gene

No ASD Table

Relevant External Links for TPI1P2 Gene

GeneLoc Exon Structure for
TPI1P2
ECgene alternative splicing isoforms for
TPI1P2

Expression for TPI1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPI1P2 Gene

mRNA differential expression in normal tissues according to GTEx for TPI1P2 Gene

This gene is overexpressed in Testis (x10.8).

NURSA nuclear receptor signaling pathways regulating expression of TPI1P2 Gene:

TPI1P2

SOURCE GeneReport for Unigene cluster for TPI1P2 Gene:

Hs.369665
genes like me logo Genes that share expression patterns with TPI1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPI1P2 Gene

Orthologs for TPI1P2 Gene

Evolution for TPI1P2 Gene

ENSEMBL:
Gene Tree for TPI1P2 (if available)
TreeFam:
Gene Tree for TPI1P2 (if available)

No data available for Orthologs for TPI1P2 Gene

Paralogs for TPI1P2 Gene

No data available for Paralogs for TPI1P2 Gene

Variants for TPI1P2 Gene

Sequence variations from dbSNP and Humsavar for TPI1P2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs794726936 Uncertain significance 129,054,727(-) GGCAG(C/T)GCAGG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs886044400 Uncertain significance 129,054,769(+) CTTCC(A/G)TGGTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs201636723 Benign 129,054,779(+) GGTGG(C/T)GGTAG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000894430 -- 129,053,617(+) GCAGA(A/G)CACCT intron-variant, upstream-variant-2KB
rs1001306307 -- 129,054,918(+) GGCAG(A/G)AGGCT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TPI1P2 Gene

Variant ID Type Subtype PubMed ID
nsv507416 OTHER sequence alteration 20534489
nsv981578 CNV duplication 23825009

Relevant External Links for TPI1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPI1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPI1P2 Gene

Disorders for TPI1P2 Gene

Relevant External Links for TPI1P2

Genetic Association Database (GAD)
TPI1P2
Human Genome Epidemiology (HuGE) Navigator
TPI1P2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPI1P2

No disorders were found for TPI1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPI1P2 Gene

Publications for TPI1P2 Gene

  1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M … Tokunaga K (Human genetics 2010) 3 45 60
  2. A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. (PMID: 23740937) Martin JE … Martin J (Human molecular genetics 2013) 3 60
  3. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) International Consortium for Systemic Lupus Erythematosus Genetics (SLEGEN) … Kelly JA (Nature genetics 2008) 45 60
  4. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick JC … Traynor BJ (The Lancet. Neurology 2007) 45 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for TPI1P2 Gene

Sources for TPI1P2 Gene

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