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Aliases for TPI1P2 Gene

Aliases for TPI1P2 Gene

  • Triosephosphate Isomerase 1 Pseudogene 2 2 3 5

External Ids for TPI1P2 Gene

Previous GeneCards Identifiers for TPI1P2 Gene

  • GC07P128695
  • GC07P123056

Summaries for TPI1P2 Gene

GeneCards Summary for TPI1P2 Gene

TPI1P2 (Triosephosphate Isomerase 1 Pseudogene 2) is a Pseudogene.

Additional gene information for TPI1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPI1P2 Gene

Genomics for TPI1P2 Gene

GeneHancer (GH) Regulatory Elements for TPI1P2 Gene

Promoters and enhancers for TPI1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I129053 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.4 -418 2.9 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 TNPO3 TPI1P2 GC07P129056 ENSG00000242588 ENSG00000243302 ENSG00000230715 ENSG00000243679 RPS10P15 ENSG00000229413 RBM28
GH07I128936 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 10.7 -115.6 -115637 5.5 HDGF PKNOX1 SMAD1 ARID4B SIN3A IRF4 GLIS2 ZNF207 ZNF143 ATF7 IRF5 GC07P128967 GC07P128965 GC07P128964 GC07P128963 KCP ENSG00000242162 FLNC FLNC-AS1 ATP6V1F
GH07I128932 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -120.8 -120783 3.3 HDGF PKNOX1 BATF KLF5 IRF4 ZNF335 ZNF143 ATF7 ETV6 BCLAF1 IRF5 ATP6V1F KCP ENSG00000242162 FLNC FLNC-AS1 TSPAN33 TNPO3 TPI1P2 LOC392787
GH07I128960 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -92.7 -92661 3.3 PKNOX1 RB1 EBF1 BATF RELA CTBP1 NFATC1 FOS IKZF2 RUNX3 IRF5 TNPO3 TPI1P2 ENSG00000242162 ATP6V1F TSPAN33 RN7SL306P ENSG00000275106
GH07I129122 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.4 +67.6 67603 1.6 PKNOX1 BMI1 YBX1 BATF IRF4 ZNF207 ATF7 ETV6 BCLAF1 IKZF2 TNPO3 TSPAN33 ENSG00000242162 TPI1P2 ENSG00000243230 AHCYL2 ATP6V1F NRF1 LOC407835 CYCSP20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TPI1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TPI1P2 Gene

Genomic Locations for TPI1P2 Gene
chr7:129,055,223-129,057,239
(GRCh38/hg38)
Size:
2,017 bases
Orientation:
Plus strand
chr7:128,695,277-128,697,293
(GRCh37/hg19)

Genomic View for TPI1P2 Gene

Genes around TPI1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPI1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPI1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPI1P2 Gene

Proteins for TPI1P2 Gene

Post-translational modifications for TPI1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TPI1P2 Gene

Domains & Families for TPI1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TPI1P2 Gene

Function for TPI1P2 Gene

Phenotypes From GWAS Catalog for TPI1P2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TPI1P2 Gene

Localization for TPI1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TPI1P2 Gene

Pathways & Interactions for TPI1P2 Gene

SuperPathways for TPI1P2 Gene

No Data Available

Interacting Proteins for TPI1P2 Gene

Gene Ontology (GO) - Biological Process for TPI1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TPI1P2 Gene

Drugs & Compounds for TPI1P2 Gene

No Compound Related Data Available

Transcripts for TPI1P2 Gene

mRNA/cDNA for TPI1P2 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPI1P2 Gene

Triosephosphate isomerase 1 pseudogene 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPI1P2 Gene

No ASD Table

Relevant External Links for TPI1P2 Gene

GeneLoc Exon Structure for
TPI1P2
ECgene alternative splicing isoforms for
TPI1P2

Expression for TPI1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TPI1P2 Gene

mRNA differential expression in normal tissues according to GTEx for TPI1P2 Gene

This gene is overexpressed in Testis (x10.8).

NURSA nuclear receptor signaling pathways regulating expression of TPI1P2 Gene:

TPI1P2

SOURCE GeneReport for Unigene cluster for TPI1P2 Gene:

Hs.369665
genes like me logo Genes that share expression patterns with TPI1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TPI1P2 Gene

Orthologs for TPI1P2 Gene

Evolution for TPI1P2 Gene

ENSEMBL:
Gene Tree for TPI1P2 (if available)
TreeFam:
Gene Tree for TPI1P2 (if available)

No data available for Orthologs for TPI1P2 Gene

Paralogs for TPI1P2 Gene

No data available for Paralogs for TPI1P2 Gene

Variants for TPI1P2 Gene

Sequence variations from dbSNP and Humsavar for TPI1P2 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs372906002 likely-benign, not specified 129,054,642(+) G/T upstream_transcript_variant
rs746708053 likely-benign, not specified 129,054,806(+) T/C upstream_transcript_variant
rs794726936 uncertain-significance, not specified 129,054,727(+) A/G upstream_transcript_variant
rs886044400 uncertain-significance, not specified 129,054,769(+) A/G upstream_transcript_variant
rs201636723 benign, not specified 129,054,779(+) C/A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TPI1P2 Gene

Variant ID Type Subtype PubMed ID
nsv507416 OTHER sequence alteration 20534489
nsv981578 CNV duplication 23825009

Additional Variant Information for TPI1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPI1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TPI1P2 Gene

Disorders for TPI1P2 Gene

Additional Disease Information for TPI1P2

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TPI1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TPI1P2 Gene

Publications for TPI1P2 Gene

  1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PMID: 20677014) Shimada M … Tokunaga K (Human genetics 2010) 3 44 58
  2. A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. (PMID: 23740937) Martin JE … Martin J (Human molecular genetics 2013) 3 58
  3. Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. (PMID: 18204446) International Consortium for Systemic Lupus Erythematosus Genetics (SLEGEN) … Kelly JA (Nature genetics 2008) 44 58
  4. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick JC … Traynor BJ (The Lancet. Neurology 2007) 44 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for TPI1P2 Gene

Sources for TPI1P2 Gene

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