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Aliases & Descriptions for TPD52
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases D52 1 , 2 N8L 1 , 2 PC-1 2 PrLZ 2 hD52 1 , 2
Descriptions Protein N8 3 prostate and colon associated protein 2 tumor protein D52 2
Search outside databases for aliases for TPD52 genePrevious GC identifers: GC08M079835 GC08M080995 GC08M080670 GC08M080997
Summaries for TPD52 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Gene Wiki entry for TPD52
Genomic Location for TPD52
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TPD52 gene Entrez Gene cytogenetic band: 8q21 Ensembl cytogenetic band: 8q21.13 HGNC cytogenetic band: 8q21 TPD52 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M081110:
(about GC identifiers )
Start:
81,109,658 bp from pter
End:
81,246,391 bp from pter
Size:
136,734 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000008.9 NT_008183.18 Proteins for TPD52
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TPD52_HUMAN, P55327 (See
protein sequence )Recommended Name: Tumor protein D52 Size : 224 amino acids; 24327 Da
Subunit : Forms homodimer or heterodimer with other members of the family
Developmental stage : Isoform 2 is expressed at lower levels in fetal brain and kidney than in adultbrain and kidney
Secondary accessions : B7Z414 Q13056 Q53EK8 Q6FGP3 Q6FGS3 Q86YZ2 Q9UCX8Alternative splicing : 3 isoforms : P55327-1 P55327-2 P55327-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001020423.1 NP_001020424.1 NP_005070.1 ENSEMBL proteins: ENSP00000368390 ENSP00000368391 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: TPD52 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TPD52: Assays for TPD52:
Protein
Domains/ Families for TPD52(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P55327 ProtoNet protein and cluster: P55327
1 Blocks protein family : IPB007327 Tumor protein D52 UniProtKB/Swiss-Prot: TPD52_HUMAN, P55327 Similarity : Belongs to the TPD52 family
Gene Function for TPD52
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001025252 Applied Biosystems Silencer ® siRNAs for TPD52 Sigma-Aldrich siRNA for TPD52 Sigma-Aldrich shRNA Panels and shRNA for TPD52 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001025252                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001025252                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001025252  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001025252 Genatlas biochemistry entry for TPD52 :tumor protein D52,breast carcinoma associated 3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for TPD52
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for TPD52 5 Interacting proteins for TPD52 (ENSP00000368391 3 P55327 1 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for TPD52 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TPD52 1 Novoseek chemical compound relationship for TPD52 gene
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Transcripts for TPD52(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001025252 Sigma-Aldrich siRNA for TPD52 Sigma-Aldrich shRNA Panels and shRNA for TPD52 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001025252 NM_001025253 NM_005079
REFSEQ mRNAs for TPD52 gene (3 alternative transcripts): NM_001025252.1 NM_001025253.1 NM_005079.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001025252 NM_001025253 NM_005079
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001025252                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001025252                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001025252  
Additional cDNA sequence: AF202897.1 AK057075.1 AK223631.1 AK295468.1 AK296615.1 AK308983.1 AK313135.1 BC018117.1 BT019444.1 BX640835.1 CR542034.1 CR542064.1 CR591025.1 EF152584.1 S82081.1 U18914.1
24/27 DOTS entries (see all 27
): DT.95261932 DT.117299 DT.95261928 DT.101969586 DT.120648588 DT.120648556 DT.100827038 DT.434112 DT.120648567 DT.120648587 DT.120648511 DT.120648620 DT.91885426 DT.95261926 DT.95261930 DT.101974971 DT.120648621 DT.75118581 DT.95315786 DT.100030168 DT.120648523 DT.91683132 DT.95261925 DT.95290503
24/383 AceView cDNA sequences (see all 383
):BU162860 BQ687427 AI922688 CB177973 BI600172 AA306002 BM667273 BE220007 AU076702 BU783828 BQ690015 BM927243 AI334712 BM661688 BI599347 BU157039 AA505975 AW135527 CB991297 CA943102 AA761317 BQ878165 BU158728 AW117230
highest scoring ESTs for TPD52 :U18914 AA377036 AI632972 AV708387 AV728041 BC018117 BE884342 BE890337 BG339306 BG703216
Unigene Cluster for TPD52: Tumor protein D52 Hs.368433 [show with all ESTs ] Unigene Representative Sequence: NM_001025252 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for TPD52 (see all 12
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c · 13d · 13e · 13f · 13g · 13h SP1 :     -   -   -   -   -           -   -     -                         SP2 :     -   -   -   -   -           -   -     -   -   -                     SP3 :     -   -   -   -   -   -         -   -     -   -   -                     SP4 :           -   -           -   -     -   -   -                     SP5 :                       -   -     -   -   -                    
About this scheme ECgene alternative splicing isoforms for TPD52 2 Ensembl transcripts including schematic representations : ENST00000379096
ENST00000379097
Expression for TPD52
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TPD52 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TPD52 1 / 2 / 3
16 probe-sets matching TPD52 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGAAAAGCTTSOURCE GeneReport for Unigene cluster: Hs.368433 Expression variation in blood from EXPOLDB for TPD52
UniProtKB/Swiss-Prot: TPD52_HUMAN, P55327 Tissue specificity : Isoform 2 is expressed in colon, breast, prostate, pancreas and kidney tumorcell lines. Isoform 2 is expressed at high levels in kidney, prostate, brain, small intestine andpancreas, at moderate levels in placenta and colon, at low levels in lung, liver and heart, and atvery low levels in spleen, thymus, peripheral mononuclear blood cells, testis and ovary
Orthologs for TPD52
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TPD52 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for TPD52 ENSEMBL Gene Tree for TPD52 Paralogs for TPD52 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TPD52 gene TPD52L3 2 TPD52L2 2 TPD52L1 2
SNPs/Variants for TPD52 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TPD52 (up to first 250kb)
Disorders & Mutations for TPD52
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604068 8 Novoseek disease relationships for TPD52 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
breast carcinoma
53.23
20
10918393 (5), 18698023 (2), 9484778 (2), 9838088 (1) (see all 5 )
prostate cancer
53.16
33
17418805 (5), 15172988 (5), 14996714 (5), 16159422 (4) (see all 9 )
tumors
37.03
64
15986428 (3), 12526213 (3), 18698023 (3), 18959755 (2) (see all 22 )
breast cancer
27.22
11
18698023 (2), 12747765 (2), 18959755 (1), 17487680 (1) (see all 7 )
benign prostatic hyperplasia
26.31
1
9372899 (1)
cancer
21.86
13
18698023 (2), 12526213 (1), 19105569 (1), 10918393 (1) (see all 5 )
ovarian cancer
13.74
4
15986428 (2)
metastasis
12.31
4
17314271 (1), 12526213 (1), 17962942 (1)
About this table 1 PharmGKB disease relationship for TPD52 gene About this table
Medical News for TPD52 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TPD52 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/53 PubMed articles for TPD52 gene (see all 53
): A screening method to identify genes commonly overexpressed in carcinomas and the identification of a novel complementary DNA sequence. (PubMed id 7796418) 2, 3, 4 Byrne J.A.... Basset P. (1995) PrLZ, a novel prostate-specific and androgen-responsive gene of the TPD52 family, amplified in chromosome 8q21.1 and overexpressed in human prostate cancer. (PubMed id 14996714) 1, 3, 4 Wang R.... Chung L.W. (2004) Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system. (PubMed id 9484778) 1, 3, 4 Byrne J.A.... Gunning P. (1998) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Isolation and characterization of a novel gene expressed in multiple cancers. (PubMed id 8632896) 3, 4 Chen S.L.... Bhat N.K. (1996) Definition of the tumor protein D52 (TPD52) gene family through cloning of D52 homologues in human (hD53) and mouse (mD52). (PubMed id 8812487) 1, 3 Byrne J.A.... Basset P. (1996) Tumor protein D52 (TPD52) is overexpressed and a gene amplification target in ovarian cancer. (PubMed id 15986428) 1, 3 Byrne J.A....Defazio A. (2005) Nonredundant functions for tumor protein D52-like proteins support specific targeting of TPD52. (PubMed id 18698023) 1, 3 Shehata M....Byrne J.A. (2008)
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Genome Databases showing TPD52
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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(According to HUGE )
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Specialized Databases showing TPD52 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TPD52 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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