Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TPD52 Gene

Aliases for TPD52 Gene

  • Tumor Protein D52 2 3
  • Protein N8 3 4
  • D52 3 6
  • Prostate And Colon Associated Protein 3
  • Prostate Leucine Zipper 3
  • PC-1 3
  • PrLZ 3
  • HD52 3
  • N8L 3

External Ids for TPD52 Gene

Summaries for TPD52 Gene

GeneCards Summary for TPD52 Gene

TPD52 (Tumor Protein D52) is a Protein Coding gene. Among its related pathways are Clathrin derived vesicle budding and Clathrin derived vesicle budding. GO annotations related to this gene include calcium ion binding and protein heterodimerization activity. An important paralog of this gene is TPD52L3.

Gene Wiki entry for TPD52 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPD52 Gene

Genomics for TPD52 Gene

Genomic Location for TPD52 Gene

Start:
80,034,868 bp from pter
End:
80,231,232 bp from pter
Size:
196,365 bases
Orientation:
Minus strand

Genomic View for TPD52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TPD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPD52 Gene

Regulatory Elements for TPD52 Gene

Proteins for TPD52 Gene

  • Protein details for TPD52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P55327-TPD52_HUMAN
    Recommended name:
    Tumor protein D52
    Protein Accession:
    P55327
    Secondary Accessions:
    • B7Z414
    • C9J502
    • D0UFD1
    • D0UFD2
    • D0UFD3
    • D0UFD4
    • D0UFD5
    • E5RKB4
    • Q13056
    • Q53EK8
    • Q6FGP3
    • Q6FGS3
    • Q86YZ2
    • Q9UCX8

    Protein attributes for TPD52 Gene

    Size:
    224 amino acids
    Molecular mass:
    24327 Da
    Quaternary structure:
    • Forms a homodimer or heterodimer with other members of the family. All isoforms interact with several 14-3-3 proteins
    SequenceCaution:
    • Sequence=BAD97351.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for TPD52 Gene

neXtProt entry for TPD52 Gene

Proteomics data for TPD52 Gene at MOPED

Post-translational modifications for TPD52 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys125 and Lys149

No data available for DME Specific Peptides for TPD52 Gene

Domains for TPD52 Gene

Protein Domains for TPD52 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TPD52 Gene

Graphical View of Domain Structure for InterPro Entry

P55327

UniProtKB/Swiss-Prot:

TPD52_HUMAN
Family:
  • Belongs to the TPD52 family.:
    • P55327
genes like me logo Genes that share domains with TPD52: view

No data available for Gene Families for TPD52 Gene

Function for TPD52 Gene

Molecular function for TPD52 Gene

GENATLAS Biochemistry: tumor protein D52,breast carcinoma associated

Gene Ontology (GO) - Molecular Function for TPD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IDA 15576473
GO:0005515 protein binding IPI 12963375
GO:0042803 protein homodimerization activity IDA 9484778
GO:0046982 protein heterodimerization activity IDA 9484778
genes like me logo Genes that share ontologies with TPD52: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TPD52 Gene

Localization for TPD52 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TPD52 Gene COMPARTMENTS Subcellular localization image for TPD52 gene
Compartment Confidence
endoplasmic reticulum 5
cytosol 2
nucleus 2
extracellular 1
golgi apparatus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TPD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 15576473
GO:0005783 endoplasmic reticulum IDA 10942595
GO:0048471 perinuclear region of cytoplasm IDA 16112108
genes like me logo Genes that share ontologies with TPD52: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TPD52 Gene

Pathways for TPD52 Gene

genes like me logo Genes that share pathways with TPD52: view

Gene Ontology (GO) - Biological Process for TPD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008284 positive regulation of cell proliferation --
GO:0009653 anatomical structure morphogenesis TAS 8632896
GO:0030183 B cell differentiation IEP 15576473
GO:0046903 secretion TAS 15576473
genes like me logo Genes that share ontologies with TPD52: view

Compounds for TPD52 Gene

(1) Novoseek inferred chemical compound relationships for TPD52 Gene

Compound -log(P) Hits PubMed IDs
polyacrylamide 28 2
genes like me logo Genes that share compounds with TPD52: view

Transcripts for TPD52 Gene

Unigene Clusters for TPD52 Gene

Tumor protein D52:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPD52 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c · 13d · 13e · 13f · 13g · 13h
SP1: - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - - - - - - - -
SP4: - - - - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - - - - - - - - - - -
SP8: - - - - - -
SP9: - - - - - -
SP10: - - -
SP11: - -
SP12:

Relevant External Links for TPD52 Gene

GeneLoc Exon Structure for
TPD52
ECgene alternative splicing isoforms for
TPD52

Expression for TPD52 Gene

mRNA expression in normal human tissues for TPD52 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TPD52 Gene

SOURCE GeneReport for Unigene cluster for TPD52 Gene Hs.368433

mRNA Expression by UniProt/SwissProt for TPD52 Gene

P55327-TPD52_HUMAN
Tissue specificity: Isoform 2 is expressed in colon, breast, prostate, pancreas and kidney tumor cell lines. Isoform 2 is expressed at high levels in kidney, prostate, brain, small intestine and pancreas, at moderate levels in placenta and colon, at low levels in lung, liver and heart, and at very low levels in spleen, thymus, peripheral mononuclear blood cells, testis and ovary.
genes like me logo Genes that share expressions with TPD52: view

No data available for mRNA differential expression in normal tissues for TPD52 Gene

Orthologs for TPD52 Gene

This gene was present in the common ancestor of animals.

Orthologs for TPD52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TPD52 35
  • 99.87 (n)
  • 99.6 (a)
TPD52 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TPD52 35
  • 91.82 (n)
  • 93.75 (a)
TPD52 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TPD52 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tpd52 35
  • 82.31 (n)
  • 86.12 (a)
Tpd52 16
Tpd52 36
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TPD52 36
  • 48 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TPD52 36
  • 58 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tpd52 35
  • 84.23 (n)
  • 87.39 (a)
chicken
(Gallus gallus)
Aves TPD52 35
  • 78.21 (n)
  • 86.03 (a)
TPD52 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TPD52 36
  • 77 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.10244 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.17690 35
tpd52 35
  • 70.26 (n)
  • 73.65 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.14430 35
tpd52 35
  • 64.68 (n)
  • 63.1 (a)
tpd52 36
  • 51 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG5174 36
  • 18 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F13E6.1 36
  • 31 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9626 36
  • 37 (a)
OneToMany
Species with no ortholog for TPD52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TPD52 Gene

ENSEMBL:
Gene Tree for TPD52 (if available)
TreeFam:
Gene Tree for TPD52 (if available)

Paralogs for TPD52 Gene

Paralogs for TPD52 Gene

Selected SIMAP similar genes for TPD52 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with TPD52: view

Variants for TPD52 Gene

Sequence variations from dbSNP and Humsavar for TPD52 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs717340 -- 80,134,615(+) ACTAA(C/T)GTCTC intron-variant
rs717341 -- 80,134,742(+) GTGGA(A/T)CCGTT intron-variant
rs717342 -- 80,135,040(+) GAGAC(A/G/T)TACGC intron-variant
rs722868 -- 80,065,286(-) TAGAT(A/G)TATAG intron-variant
rs722901 -- 80,164,024(-) TCTCT(C/G)TCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TPD52 Gene

Variant ID Type Subtype PubMed ID
nsv891061 CNV Loss 21882294
esv2737216 CNV Deletion 23290073
esv9040 CNV Gain 19470904
esv33694 CNV Gain 17666407
nsv518684 CNV Gain 19592680

Relevant External Links for TPD52 Gene

HapMap Linkage Disequilibrium report
TPD52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TPD52 Gene

Disorders for TPD52 Gene

(8) Novoseek inferred disease relationships for TPD52 Gene

Disease -log(P) Hits PubMed IDs
prostate cancer 52.9 31
breast carcinoma 51.5 11
tumors 39.6 38
breast cancer 24.6 9
benign prostatic hyperplasia 24.2 1

Relevant External Links for TPD52

Genetic Association Database (GAD)
TPD52
Human Genome Epidemiology (HuGE) Navigator
TPD52
genes like me logo Genes that share disorders with TPD52: view

No data available for UniProtKB/Swiss-Prot for TPD52 Gene

Publications for TPD52 Gene

  1. Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system. (PMID: 9484778) Byrne J.A. … Gunning P. (Oncogene 1998) 3 4 23
  2. PrLZ, a novel prostate-specific and androgen-responsive gene of the TPD52 family, amplified in chromosome 8q21.1 and overexpressed in human prostate cancer. (PMID: 14996714) Wang R. … Chung L.W. (Cancer Res. 2004) 3 4 23
  3. A screening method to identify genes commonly overexpressed in carcinomas and the identification of a novel complementary DNA sequence. (PMID: 7796418) Byrne J.A. … Basset P. (Cancer Res. 1995) 2 3 4
  4. [PC-1 enhances c-myc gene expression in prostate cancer cells]. (PMID: 20423888) Yu L. … Zhou J.G. (Yi Chuan 2010) 3 23
  5. Nonredundant functions for tumor protein D52-like proteins support specific targeting of TPD52. (PMID: 18698023) Shehata M. … Byrne J.A. (Clin. Cancer Res. 2008) 3 23

Products for TPD52 Gene

Sources for TPD52 Gene

Back to Top

Content