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Aliases for TPD52 Gene

Aliases for TPD52 Gene

  • Tumor Protein D52 2 3 5
  • Protein N8 3 4
  • Prostate And Colon Associated Protein 3
  • Prostate Leucine Zipper 3
  • PC-1 3
  • PrLZ 3
  • HD52 3
  • D52 3
  • N8L 3

External Ids for TPD52 Gene

Previous GeneCards Identifiers for TPD52 Gene

  • GC08M079835
  • GC08M080995
  • GC08M080670
  • GC08M080997
  • GC08M081110
  • GC08M076436
  • GC08M080870

Summaries for TPD52 Gene

GeneCards Summary for TPD52 Gene

TPD52 (Tumor Protein D52) is a Protein Coding gene. Diseases associated with TPD52 include Nodular Malignant Melanoma. Among its related pathways are Clathrin derived vesicle budding and Vesicle-mediated transport. GO annotations related to this gene include calcium ion binding and protein heterodimerization activity. An important paralog of this gene is ENSG00000276418.

Gene Wiki entry for TPD52 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPD52 Gene

Genomics for TPD52 Gene

Regulatory Elements for TPD52 Gene

Enhancers for TPD52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around TPD52 on UCSC Golden Path with GeneCards custom track

Promoters for TPD52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for TPD52 Gene

Chromosome:
8
Start:
80,034,745 bp from pter
End:
80,231,232 bp from pter
Size:
196,488 bases
Orientation:
Minus strand

Genomic View for TPD52 Gene

Genes around TPD52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TPD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TPD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPD52 Gene

Proteins for TPD52 Gene

  • Protein details for TPD52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P55327-TPD52_HUMAN
    Recommended name:
    Tumor protein D52
    Protein Accession:
    P55327
    Secondary Accessions:
    • B7Z414
    • C9J502
    • D0UFD1
    • D0UFD2
    • D0UFD3
    • D0UFD4
    • D0UFD5
    • E5RKB4
    • Q13056
    • Q53EK8
    • Q6FGP3
    • Q6FGS3
    • Q86YZ2
    • Q9UCX8

    Protein attributes for TPD52 Gene

    Size:
    224 amino acids
    Molecular mass:
    24327 Da
    Quaternary structure:
    • Forms a homodimer or heterodimer with other members of the family. All isoforms interact with several 14-3-3 proteins.
    SequenceCaution:
    • Sequence=BAD97351.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for TPD52 Gene

neXtProt entry for TPD52 Gene

Post-translational modifications for TPD52 Gene

  • Ubiquitination at Lys 125 and Lys 149
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TPD52 Gene

Domains & Families for TPD52 Gene

Protein Domains for TPD52 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P55327

UniProtKB/Swiss-Prot:

TPD52_HUMAN :
  • Belongs to the TPD52 family.
Family:
  • Belongs to the TPD52 family.
genes like me logo Genes that share domains with TPD52: view

No data available for Gene Families for TPD52 Gene

Function for TPD52 Gene

Molecular function for TPD52 Gene

GENATLAS Biochemistry:
tumor protein D52,breast carcinoma associated

Gene Ontology (GO) - Molecular Function for TPD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IDA 15576473
GO:0005515 protein binding IPI 9484778
GO:0042803 protein homodimerization activity IDA 9484778
GO:0046982 protein heterodimerization activity IDA 9484778
genes like me logo Genes that share ontologies with TPD52: view
genes like me logo Genes that share phenotypes with TPD52: view

Animal Model Products

CRISPR Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TPD52 Gene

Localization for TPD52 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TPD52 Gene COMPARTMENTS Subcellular localization image for TPD52 gene
Compartment Confidence
endoplasmic reticulum 5
cytosol 4
golgi apparatus 3
nucleus 2
plasma membrane 2
extracellular 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TPD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 15576473
GO:0005783 endoplasmic reticulum IDA 10942595
GO:0048471 perinuclear region of cytoplasm IDA 16112108
genes like me logo Genes that share ontologies with TPD52: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TPD52 Gene

Pathways & Interactions for TPD52 Gene

genes like me logo Genes that share pathways with TPD52: view

SIGNOR curated interactions for TPD52 Gene

Other effect:

Gene Ontology (GO) - Biological Process for TPD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009653 anatomical structure morphogenesis TAS 8632896
GO:0030183 B cell differentiation IEP 15576473
GO:0046903 secretion TAS 15576473
genes like me logo Genes that share ontologies with TPD52: view

Drugs & Compounds for TPD52 Gene

(1) Additional Compounds for TPD52 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with TPD52: view

Transcripts for TPD52 Gene

Unigene Clusters for TPD52 Gene

Tumor protein D52:
Representative Sequences:

CRISPR Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TPD52 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c · 13d · 13e · 13f · 13g · 13h
SP1: - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - - - - - - - -
SP4: - - - - - - -
SP5: - - - - -
SP6: - - - -
SP7: - - - - - - - - - - - -
SP8: - - - - - -
SP9: - - - - - -
SP10: - - -
SP11: - -
SP12:

Relevant External Links for TPD52 Gene

GeneLoc Exon Structure for
TPD52
ECgene alternative splicing isoforms for
TPD52

Expression for TPD52 Gene

mRNA expression in normal human tissues for TPD52 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TPD52 Gene

This gene is overexpressed in Oral epithelium (13.6), Salivary gland (9.0), and Islet of Langerhans (8.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TPD52 Gene



Protein tissue co-expression partners for TPD52 Gene

NURSA nuclear receptor signaling pathways regulating expression of TPD52 Gene:

TPD52

SOURCE GeneReport for Unigene cluster for TPD52 Gene:

Hs.368433

mRNA Expression by UniProt/SwissProt for TPD52 Gene:

P55327-TPD52_HUMAN
Tissue specificity: Isoform 2 is expressed in colon, breast, prostate, pancreas and kidney tumor cell lines. Isoform 2 is expressed at high levels in kidney, prostate, brain, small intestine and pancreas, at moderate levels in placenta and colon, at low levels in lung, liver and heart, and at very low levels in spleen, thymus, peripheral mononuclear blood cells, testis and ovary.
genes like me logo Genes that share expression patterns with TPD52: view

Primer Products

No data available for mRNA differential expression in normal tissues for TPD52 Gene

Orthologs for TPD52 Gene

This gene was present in the common ancestor of animals.

Orthologs for TPD52 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TPD52 34
  • 91.82 (n)
  • 93.75 (a)
TPD52 35
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tpd52 34
  • 82.31 (n)
  • 86.12 (a)
Tpd52 16
Tpd52 35
  • 76 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TPD52 34
  • 99.87 (n)
  • 99.6 (a)
TPD52 35
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tpd52 34
  • 84.23 (n)
  • 87.39 (a)
dog
(Canis familiaris)
Mammalia TPD52 35
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TPD52 35
  • 48 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TPD52 35
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves TPD52 34
  • 78.21 (n)
  • 86.03 (a)
TPD52 35
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TPD52 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.17690 34
tpd52 34
  • 70.26 (n)
  • 73.65 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.10244 34
zebrafish
(Danio rerio)
Actinopterygii Dr.14430 34
tpd52 34
  • 64.68 (n)
  • 63.1 (a)
tpd52 35
  • 51 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG5174 35
  • 18 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F13E6.1 35
  • 31 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9626 35
  • 37 (a)
OneToMany
Species where no ortholog for TPD52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TPD52 Gene

ENSEMBL:
Gene Tree for TPD52 (if available)
TreeFam:
Gene Tree for TPD52 (if available)

Paralogs for TPD52 Gene

Paralogs for TPD52 Gene

genes like me logo Genes that share paralogs with TPD52: view

Variants for TPD52 Gene

Sequence variations from dbSNP and Humsavar for TPD52 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs35099105 - 80,064,579(+) TGGGT(A/C)TGTTC intron-variant, nc-transcript-variant, reference, missense
rs965655 -- 80,171,993(+) ACCTA(A/C)ATAAT upstream-variant-2KB
rs1025187 -- 80,069,082(-) AACAT(C/T)TCCTA intron-variant
rs1042638 -- 80,037,711(-) TGATT(C/T)TTAAC nc-transcript-variant, utr-variant-3-prime
rs1042683 -- 80,036,718(-) AAGCC(A/C)CAGGT nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for TPD52 Gene

Variant ID Type Subtype PubMed ID
esv2737216 CNV deletion 23290073
esv33694 CNV gain 17666407
esv3413156 CNV insertion 20981092
esv3543725 CNV deletion 23714750
esv3617769 CNV loss 21293372
esv3617771 CNV loss 21293372
esv9040 CNV gain 19470904
nsv1128432 CNV deletion 24896259
nsv518684 CNV gain 19592680

Variation tolerance for TPD52 Gene

Residual Variation Intolerance Score: 66.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.32; 53.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TPD52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TPD52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TPD52 Gene

Disorders for TPD52 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TPD52 Gene - From: DISEASES

Disorder Aliases PubMed IDs
nodular malignant melanoma
  • nodular melanoma
- elite association - COSMIC cancer census association via MalaCards
Search TPD52 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TPD52

Genetic Association Database (GAD)
TPD52
Human Genome Epidemiology (HuGE) Navigator
TPD52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TPD52
genes like me logo Genes that share disorders with TPD52: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TPD52 Gene

Publications for TPD52 Gene

  1. PrLZ, a novel prostate-specific and androgen-responsive gene of the TPD52 family, amplified in chromosome 8q21.1 and overexpressed in human prostate cancer. (PMID: 14996714) Wang R. … Chung L.W. (Cancer Res. 2004) 3 4 22 65
  2. Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system. (PMID: 9484778) Byrne J.A. … Gunning P. (Oncogene 1998) 3 4 22 65
  3. A screening method to identify genes commonly overexpressed in carcinomas and the identification of a novel complementary DNA sequence. (PMID: 7796418) Byrne J.A. … Basset P. (Cancer Res. 1995) 2 3 4 65
  4. Polymorphisms in predicted miRNA binding sites and osteoporosis. (PMID: 20641033) Lei S.F. … Deng H.W. (J. Bone Miner. Res. 2011) 3 46 65
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 65

Products for TPD52 Gene

Sources for TPD52 Gene

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