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Aliases for TPBGL Gene

Subcategory (RNA class) for TPBGL Gene

lncRNA

Aliases for TPBGL Gene

  • Trophoblast Glycoprotein-Like 2 3

External Ids for TPBGL Gene

ORGUL Members for TPBGL Gene

Summaries for TPBGL Gene

GeneCards Summary for TPBGL Gene

TPBGL (Trophoblast Glycoprotein-Like) is a Protein Coding gene, and belongs to lncRNA RNA class. An important paralog of this gene is TPBG.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TPBGL Gene

Genomics for TPBGL Gene

Genomic Location for TPBGL Gene

Start:
75,240,905 bp from pter
End:
75,243,704 bp from pter
Size:
2,800 bases
Orientation:
Plus strand

Genomic View for TPBGL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TPBGL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TPBGL Gene

No data available for Regulatory Elements for TPBGL Gene

Proteins for TPBGL Gene

  • Protein details for TPBGL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DKB5-TPBGL_HUMAN
    Recommended name:
    Trophoblast glycoprotein-like
    Protein Accession:
    P0DKB5
    Secondary Accessions:

    Protein attributes for TPBGL Gene

    Size:
    382 amino acids
    Molecular mass:
    40400 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TPBGL Gene

Proteomics data for TPBGL Gene at MOPED

Post-translational modifications for TPBGL Gene

Other Protein References for TPBGL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TPBGL Gene

Domains for TPBGL Gene

Protein Domains for TPBGL Gene

UniProtKB/Swiss-Prot:

TPBGL_HUMAN
Similarity:
  • Contains 5 LRR (leucine-rich) repeats.:
    • P0DKB5
genes like me logo Genes that share domains with TPBGL: view

No data available for Gene Families for TPBGL Gene

Function for TPBGL Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TPBGL Gene

Localization for TPBGL Gene

Subcellular locations from UniProtKB/Swiss-Prot for TPBGL Gene

Membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for TPBGL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TPBGL: view

Pathways for TPBGL Gene

SuperPathways for TPBGL Gene

No Data Available

Interacting Proteins for TPBGL Gene

Gene Ontology (GO) - Biological Process for TPBGL Gene

None

No data available for Pathways by source for TPBGL Gene

Transcripts for TPBGL Gene

mRNA/cDNA for TPBGL Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TPBGL Gene

Trophoblast glycoprotein-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TPBGL Gene

No ASD Table

Relevant External Links for TPBGL Gene

GeneLoc Exon Structure for
TPBGL
ECgene alternative splicing isoforms for
TPBGL

Expression for TPBGL Gene

SOURCE GeneReport for Unigene cluster for TPBGL Gene Hs.577323

No Expression Related Data Available

Orthologs for TPBGL Gene

This gene was present in the common ancestor of chordates.

Orthologs for TPBGL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TPBGL 36
  • 99.56 (n)
  • 99.74 (a)
cow
(Bos Taurus)
Mammalia TPBGL 36
  • 90.14 (n)
  • 90.05 (a)
TPBGL 37
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TPBGL 36
  • 93.28 (n)
  • 91.71 (a)
TPBGL 37
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm4980 36
  • 85.44 (n)
  • 86.84 (a)
Gm4980 37
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TPBGL 37
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tpbgl 36
  • 86.05 (n)
  • 87.37 (a)
chicken
(Gallus gallus)
Aves TPBGL 37
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 34 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii waif2 36
  • 47.6 (n)
  • 42.47 (a)
waif2 37
  • 40 (a)
OneToOne
Species with no ortholog for TPBGL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TPBGL Gene

ENSEMBL:
Gene Tree for TPBGL (if available)
TreeFam:
Gene Tree for TPBGL (if available)

Paralogs for TPBGL Gene

Paralogs for TPBGL Gene

Selected SIMAP similar genes for TPBGL Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TPBGL: view

Variants for TPBGL Gene

Sequence variations from dbSNP and Humsavar for TPBGL Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs4601813 -- 75,239,071(+) GGCTA(C/T)AGCTG upstream-variant-2KB
rs7927563 -- 75,240,146(+) GGAAA(A/C)CACAC upstream-variant-2KB
rs7927925 -- 75,240,489(+) CTCTC(C/T)GCAGT upstream-variant-2KB
rs7943934 -- 75,239,302(+) AGTGT(A/G)CATAT upstream-variant-2KB
rs11236376 -- 75,243,304(+) CCTTC(C/G)ATTTC utr-variant-3-prime

Relevant External Links for TPBGL Gene

HapMap Linkage Disequilibrium report
TPBGL

No data available for Structural Variations from Database of Genomic Variants (DGV) for TPBGL Gene

Disorders for TPBGL Gene

No disorders were found for TPBGL Gene.

No data available for UniProtKB/Swiss-Prot for TPBGL Gene

Publications for TPBGL Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for TPBGL Gene

Sources for TPBGL Gene

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