TOX Gene
protein-coding GIFtS : 49
GCID: GC08 M059717
thymocyte selection-associated high mobility group box
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Aliasesfor TOX gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Thymocyte Selection-Associated High Mobility Group Box 1 2 KIAA08081 3 5 TOX11 2 Thymus High Mobility Group Box Protein TOX2 3 Thymocyte Selection-Associated High Mobility Group Box Protein TOX2
Export aliases for TOX gene to outside databases Previous GC identifers: GC08M058791 GC08M059657 GC08M059441 GC08M059767 GC08M059880 GC08M055205
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Summariesfor TOX gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TOX : The protein encoded by this gene contains a HMG box DNA binding domain. HMG boxes are found in many eukaryotic proteins involved in chromatin assembly, transcription and replication. This protein may function to regulate T-cell development.(provided by RefSeq, Apr 2009) UniProtKB/Swiss-Prot: TOX_HUMAN, O94900 Function : May play a role in regulating T-cell development (By similarity)Gene Wiki entry for TOX
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Genomic Viewsfor TOX gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000008.10 NC_018919.1 NT_008183.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TOX gene promoter: GATA-3 Pax-5 GATA-2 GATA-1 NF-AT NF-AT4 NF-AT2 NF-AT3 Pax-4a NF-AT1 Other transcription factors Search SABiosciences Chromatin IP Primers for TOX Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TOX
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8q12.1 Ensembl cytogenetic band: 8q12.1 HGNC cytogenetic band: 8q12.2-q12.3 TOX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M059717: view genomic region
(about GC identifiers )
Start:
59,717,977 bp from pter
End:
60,031,767 bp from pter
Size:
313,791 bases
Orientation:
minus strand
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Proteinsfor TOX gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TOX_HUMAN, O94900 (See
protein sequence )Recommended Name: Thymocyte selection-associated high mobility group box protein TOX Size : 526 amino acids; 57513 Da
Subcellular location : Nucleus (By similarity)
Sequence caution : Sequence=BAA34528.2; Type=Erroneous initiation;
Secondary accessions : Q96AV5Explore the universe of human proteins at neXtProt for TOX: NX_O94900 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O94900 TOX Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_055544.1 ENSEMBL proteins: ENSP00000354842 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
TOX for ontologies About GeneDecksing TOX Antibody Products: Assay Products for TOX:
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Protein
Domains / Familiesfor TOX gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TOX for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry O94900 ProtoNet protein and cluster: O94900
UniProtKB/Swiss-Prot: TOX_HUMAN, O94900 Similarity : Contains 1 HMG box DNA-binding domain
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Functionfor TOX gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: TOX_HUMAN, O94900 Function : May play a role in regulating T-cell development (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TOX (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TOXOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TOX (NM_004045 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TOX Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TOX
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TOX
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IEA --
TOX for ontologies About GeneDecksing Animal Models: Mouse knock-out Tox tm1.1Kay for TOX 4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Tox) :
TOX for phenotypes About GeneDecksing
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Pathways & Interactionsfor TOX gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TOX
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Drugs & Compoundsfor TOX gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TOX Search CenterWatch for drugs/clinical trials and news about TOX
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Transcriptsfor TOX gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TOX gene: NM_014729.2 Unigene Cluster for TOX:
Thymocyte selection-associated high mobility group box Hs.491805 [show with all ESTs ] Unigene Representative Sequence: BX647462 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000361421 (uc003xtw.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TOX (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TOXOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TOX (NM_004045 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TOX Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TOX
Additional cDNA sequence: AB018351.1 AK000971.1 AK302331.1 BC016665.1 BX647462.1
4 DOTS entries : DT.440697 DT.100708490
DT.121489305 DT.97808970 24/114 AceView cDNA sequences (see all 114 ):
CK819996 BI761311 AA947946 F03243 AB018351 BM930785 AW172879 AA906617 AA687397 AA877084 Z44018 BM353988 R44946 AI961231 BM684634 BQ478444 BQ774581 AU117984 BX108481 BE220326 T27108 Z43888 BM142206 AL558853 GeneLoc Exon Structure
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Expression for TOX gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TOX expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AATAAAGCCA
About this image TOX expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See TOX Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TOX SOURCE GeneReport for Unigene cluster: Hs.491805 SABiosciences Expression via Pathway-Focused PCR Array including TOX : T Helper Cell Differentiation in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TOXBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TOX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TOX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TOX In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TOX
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Orthologsfor TOX gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for TOX gene from 8/25 species (see all 25 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
TOX1
thymocyte selection-associated high mobility group more
85.86(n) 92.64(a)
 
421138 NM_001031025.1 NP_001026196.1
lizard (Anolis carolinensis)
Reptilia
TOX6
--
90(a)
1 ↔ 1
4(27747657-27852697)
African clawed frog (Xenopus laevis)
Amphibia
Xl.14572
Xenopus laevis transcribed sequences
83.81(n)
 
BX844585.1
zebrafish (Danio rerio)
Actinopterygii
tox1
thymocyte selection-associated high mobility group more
68.06(n) 67.27(a)
 
569666 XM_001919504.3 XP_001919539.3
fruit fly (Drosophila melanogaster)
Insecta
CG121046
--
18(a)
1 → many
3L(1600726-1602674)
worm (Caenorhabditis elegans)
Secernentea
hmg-1.26
High mobility group protein 1.2
12(a)
possible ortholog
III(6280332-6283068)
thale cress (Arabidopsis thaliana)
eudicotyledons
NFD6
FACT complex subunit SSRP1
4(a)
possible ortholog
3(10784889-10788729)
rice (Oryza sativa)
Liliopsida
----
SSRP1-like FACT complex subunit, putative, express... SSRP1-like FACT complex subunit, putative, express...
5(a) 5(a)
possible orthologpossible ortholog
5(4965403-4971007) 1(4496719-4503407)
ENSEMBL Gene Tree for TOX (if available)TreeFam Gene Tree for TOX (if available)
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Paralogsfor TOX gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TOX gene TOX4 2 TOX3 2 HMGB4 2 HMGB3 2 HMGB1 2 TOX2 2 HMGB2 2 4 SIMAP similar genes for TOX using alignment to 1 protein entry: TOX_HUMAN :Bbtx1 TOX3 TOX2 TOX4
TOX for paralogs About GeneDecksing
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Genomic Variantsfor TOX gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 8 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TOX (59717977 - 59967977 bp, first 250kb of TOX)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TOX: -- Locus Specific Mutation Databases (LSDB): TOX
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TOX
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Disorders
/ Diseasesfor TOX gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TOX for disorders About GeneDecksing
OMIM gene information: 606863
OMIM disorders : --9 diseases for TOX : About MalaCards estrogen-receptor positive breast cancer sickle cell anemia toxic encephalopathy diphtheria toxoplasmosis diarrhea breast cancer anemia malaria 3 diseases from the University of Copenhagen DISEASES database for TOX :Diphtheria Diarrhea Toxic encephalopathy Human Genome Epidemiology (HuGE) Navigator: TOX (6 documents) Export disorders for TOX gene to outside databases
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Publicationsfor TOX gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TOX gene, integrated from 9 sources (see all 19 ): (articles sorted by number of sources associating them with TOX) Utopia : connect your pdf to the dynamic world of online information
Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9872452) 1 , 2 , 3 Nagase T.... Ohara O. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) TOX: an HMG box protein implicated in the regulation of thymocyte selection. (PubMed id 11850626) 1 , 3 Wilkinson B....Kaye J. (2002) Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954) 1 , 2 Nakajima D.... Nagase T. (2002) TOX provides a link between calcineurin activation and CD8 lineage commitment. (PubMed id 15078895) 1 , 9 Aliahmad P....Kaye J. (2004) Differential Epigenetic Regulation of TOX Subfamily High Mobility Group Box Genes in Lung and Breast Cancers. (PubMed id 22496870) 1 Tessema M.... Belinsky S.A. (2012) Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PubMed id 22589738) 1 Fox C.S....Borecki I.B. (2012) Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. (PubMed id 21248752) 2 Varela I....Futreal P.A. (2011) TOX regulates the differentiation of human natural ki ller cells from hematopoietic stem cells in vitro. (PubMed id 21126536) 1 Yun S....Choi I. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010)
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External Searches for TOX gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TOX gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TOX gene
(According to HUGE )
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Specialized Databases showing TOX gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TOX Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TOX gene: Search GeneIP for patents involving TOX GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TOX gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TOX OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TOX OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TOX OriGene Protein Over-expression Lysate for TOX Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TOX OriGene 3'-UTR Clone for TOX OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TOX OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TOX Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for TOX OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TOX OriGene Custom Protein Services for TOX OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TOX QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TOX QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TOX QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TOX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TOX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TOX
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TOX Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TOX
Search ThermoFisher Antibodies for TOX
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TOX
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Aliases for TOX
Databases for TOX
Disorders / Diseases for TOX
Domains / Families for TOX
Drugs / Compounds for TOX
Expression for TOX
Function for TOX
Genomic Views for TOX
Intellectual Property for TOX
Orthologs for TOX
Paralogs for TOX
Pathways / Interactions for TOX
Products for TOX
Proteins for TOX
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Search Box for TOX
Summaries for TOX
Transcripts for TOX
Variants for TOX
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