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Aliases for TOPORS-AS1 Gene

Subcategory (RNA class) for TOPORS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TOPORS-AS1 Gene

  • TOPORS Antisense RNA 1 2 3 5
  • TOPORS Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 9 Open Reading Frame 133 2
  • C9orf133 3

External Ids for TOPORS-AS1 Gene

Previous HGNC Symbols for TOPORS-AS1 Gene

  • C9orf133

Previous GeneCards Identifiers for TOPORS-AS1 Gene

  • GC09P032575
  • GC09P032578
  • GC09P032581
  • GC09P032586
  • GC09P032583
  • GC09P032588
  • GC09P032590
  • GC09P032592

Summaries for TOPORS-AS1 Gene

GeneCards Summary for TOPORS-AS1 Gene

TOPORS-AS1 (TOPORS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOPORS-AS1 Gene

Genomics for TOPORS-AS1 Gene

Regulatory Elements for TOPORS-AS1 Gene

Enhancers for TOPORS-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F032404 0.4 ENCODE 12 -146.2 -146239 0.8 YY1 TOPORS DDX58 TOPORS-AS1 ACO1 LOC105376014
GH09F032549 1.2 ENCODE 0.8 +1.3 1278 5.1 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 GVQW1 NDUFB6 TCEA1P4 DDX58 NFX1 TOPORS TOPORS-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TOPORS-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TOPORS-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001302181 656 4000 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for TOPORS-AS1 Gene

Chromosome:
9
Start:
32,551,144 bp from pter
End:
32,567,005 bp from pter
Size:
15,862 bases
Orientation:
Plus strand

Genomic View for TOPORS-AS1 Gene

Genes around TOPORS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOPORS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOPORS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOPORS-AS1 Gene

Proteins for TOPORS-AS1 Gene

  • Protein details for TOPORS-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTY6
    Recommended name:
    Protein TOPORS-AS1
    Protein Accession:
    A0A1B0GTY6

    Protein attributes for TOPORS-AS1 Gene

    Size:
    35 amino acids
    Molecular mass:
    3781 Da
    Quaternary structure:
    No Data Available
  • Protein details for TOPORS-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUW7
    Recommended name:
    Protein TOPORS-AS1
    Protein Accession:
    A0A1B0GUW7

    Protein attributes for TOPORS-AS1 Gene

    Size:
    55 amino acids
    Molecular mass:
    6429 Da
    Quaternary structure:
    No Data Available
  • Protein details for TOPORS-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GV65
    Recommended name:
    Protein TOPORS-AS1
    Protein Accession:
    A0A1B0GV65

    Protein attributes for TOPORS-AS1 Gene

    Size:
    37 amino acids
    Molecular mass:
    4281 Da
    Quaternary structure:
    No Data Available
  • Protein details for TOPORS-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GW09
    Recommended name:
    Protein TOPORS-AS1
    Protein Accession:
    A0A1B0GW09

    Protein attributes for TOPORS-AS1 Gene

    Size:
    52 amino acids
    Molecular mass:
    6072 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TOPORS-AS1 Gene

Post-translational modifications for TOPORS-AS1 Gene

No Post-translational modifications

Other Protein References for TOPORS-AS1 Gene

No data available for DME Specific Peptides for TOPORS-AS1 Gene

Domains & Families for TOPORS-AS1 Gene

Protein Domains for TOPORS-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TOPORS-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TOPORS-AS1 Gene

Function for TOPORS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOPORS-AS1 Gene

Localization for TOPORS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TOPORS-AS1 Gene

Pathways & Interactions for TOPORS-AS1 Gene

SuperPathways for TOPORS-AS1 Gene

No Data Available

Interacting Proteins for TOPORS-AS1 Gene

Gene Ontology (GO) - Biological Process for TOPORS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TOPORS-AS1 Gene

Transcripts for TOPORS-AS1 Gene

mRNA/cDNA for TOPORS-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TOPORS-AS1 Gene

No ASD Table

Relevant External Links for TOPORS-AS1 Gene

GeneLoc Exon Structure for
TOPORS-AS1
ECgene alternative splicing isoforms for
TOPORS-AS1

Expression for TOPORS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TOPORS-AS1 Gene

genes like me logo Genes that share expression patterns with TOPORS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TOPORS-AS1 Gene

Orthologs for TOPORS-AS1 Gene

Evolution for TOPORS-AS1 Gene

ENSEMBL:
Gene Tree for TOPORS-AS1 (if available)
TreeFam:
Gene Tree for TOPORS-AS1 (if available)

No data available for Orthologs for TOPORS-AS1 Gene

Paralogs for TOPORS-AS1 Gene

No data available for Paralogs for TOPORS-AS1 Gene

Variants for TOPORS-AS1 Gene

Sequence variations from dbSNP and Humsavar for TOPORS-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs780800052 Uncertain significance 32,550,905(+) AGCGG(A/C/G)AGCAG intron-variant, upstream-variant-2KB, reference, missense
rs794727280 Uncertain significance 32,550,765(-) GTGAG(-/TGAG)ATTCG intron-variant, upstream-variant-2KB
rs112527210 Benign 32,550,914(+) AGGCG(A/G)GGGCG intron-variant, upstream-variant-2KB, reference, missense
rs61758066 Benign 32,550,898(+) CCTCC(C/G)AAGCG intron-variant, upstream-variant-2KB, reference, missense
rs10703297 -- 32,556,846(+) CCTAC(-/T/TT)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TOPORS-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3620302 CNV gain 21293372
nsv831540 CNV gain 17160897

Relevant External Links for TOPORS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOPORS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TOPORS-AS1 Gene

Disorders for TOPORS-AS1 Gene

Relevant External Links for TOPORS-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TOPORS-AS1

No disorders were found for TOPORS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOPORS-AS1 Gene

Publications for TOPORS-AS1 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy R.B. … Poland G.A. (Hum. Genet. 2012) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for TOPORS-AS1 Gene

Sources for TOPORS-AS1 Gene

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