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Aliases & Descriptions for TOP2B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 5.99.1.3 3 | | TOPIIB 2 | | top2beta 2 |
| | | Descriptions |
|---|
| DNA topoisomerase II beta 2 | | DNA topoisomerase II, 180 kD 2 | | DNA topoisomerase II, beta isozyme 2, 3 | | U937 associated antigen 2 | | antigen MLAA-44 2 | | topo II beta 2 | | topoisomerase (DNA) II beta (180kD) 1, 2 | | topoisomerase (DNA) II beta 180kDa 2 | | topoisomerase II beta 2 | | topoisomerase II beta 180kDa 1 | | topoisomerase IIb 2 |
|
| | Search outside databases for aliases for TOP2B genePrevious GC identifers: GC03M025346 GC03M025489 |
Summaries for TOP2B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TOP2B: This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This nuclear enzyme is involved in processes such as chromosome condensation, chromatid separation, and the relief of torsional stress that occurs during DNA transcription and replication. It catalyzes the transient breaking and rejoining of two strands of duplex DNA which allows the strands to pass through one another, thus altering the topology of DNA. Two forms of this enzyme exist as likely products of a gene duplication event. The gene encoding this form, beta, is localized to chromosome 3 and the alpha form is localized to chromosome 17. The gene encoding this enzyme functions as the target for several anticancer agents and a variety of mutations in this gene have been associated with the development of drug resistance. Reduced activity of this enzyme may also play a role in ataxia-telangiectasia. Alternative splicing of this gene results in two transcript variants; however, the second variant has not yet been fully described. [provided by RefSeq] UniProtKB/Swiss-Prot: TOP2B_HUMAN, Q02880Function: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. Indirectly ivolved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 geneGene Wiki entry for TOP2B |
Genomic Location for TOP2B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3p24 Ensembl cytogenetic band: 3p24.2 HGNC cytogenetic band: 3p24TOP2B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M025614:
(about GC identifiers)
Start:
|
25,614,479 bp from pter |
End:
|
25,680,792 bp from pter |
Size:
|
66,314 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for TOP2B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TOP2B_HUMAN, Q02880 (See
protein sequence)Recommended Name: DNA topoisomerase 2-beta Size: 1626 amino acids; 183267 Da
Subunit: Homodimer. Component of the WINAC complex, at least composed of SMARCA2, SMARCA4, SMARCB1, SMARCC1, SMARCC2, SMARCD1, SMARCE1, ACTL6A, BAZ1B/WSTF, ARID1A, SUPT16H, CHAF1A and TOP2B
Subcellular location: Cytoplasm. Nucleus, nucleolus
Miscellaneous: Eukaryotic topoisomerase I and II can relax both negative and positive supercoils, whereas prokaryotic enzymes relax only negative supercoils
Secondary accessions: Q13600 Q9UMG8 Q9UQP8Alternative splicing: 2 isoforms: Q02880-1 Q02880-2 Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001059.2
ENSEMBL proteins: ENSP00000264331
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
): About this table
Antibodies for TOP2B: Assays for TOP2B: | Protein
Domains/ Families for TOP2B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q02880
ProtoNet protein and cluster: Q02880 5/6 Blocks protein families (see all 6
): IPB001154 Topoisomerase II signature IPB002205 DNA gyrase/topoisomerase IV IPB003594 ATP-binding region IPB003957 CCAAT-binding transcription factor subunit A signature IPB011558 DNA topoisomerase
UniProtKB/Swiss-Prot: TOP2B_HUMAN, Q02880Similarity: Belongs to the type II topoisomerase family | Gene Function for TOP2B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001068
Applied Biosystems Silencer® siRNAs for TOP2B
Sigma-Aldrich siRNA and siRNA Panels for TOP2B  Sigma-Aldrich shRNA for TOP2B  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001068                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001068                                  untagged cDNA clone in CMV expression vector: NM_001068 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001068
UniProtKB/Swiss-Prot: TOP2B_HUMAN, Q02880Function: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. Indirectly ivolved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 geneCatalytic activity: ATP-dependent breakage, passage and rejoining of double-stranded DNAEnzyme Number (IUBMB): EC 5.99.1.3 Genatlas biochemistry entry for TOP2B:DNA topoisomerase II beta (180kDa),ubiquitous,ATPase component of the topoisomerase II,involved in the breakage and rejoining of double strand of DNA,relaxing both positively and negatively supercoiled DNA,target of several drugs,widely used in the treatment of human cancers8 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Top2b):
5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
): About this table | Pathways & Interactions for TOP2B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for TOP2B (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TOP2B 
5/29 Interacting proteins for TOP2B (ENSP000002643313) via UniProtKB, MINT, and/or STRING (see all 29
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for TOP2B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for TOP2B |
 | Sigma-Aldrich Small Molecules for TOP2B: Inhibitor |
Compounds for TOP2B available from Tocris Bioscience About this table
2 Novoseek chemical compound relationships for TOP2B gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| gal 1 |
53.59 |
1 |
9025779 (1) |
| atp |
10.80 |
2 |
12505993 (2) |
About this table
1 PharmGKB drug compound relationship for TOP2B geneAbout this table
|
Transcripts for TOP2B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001068
Sigma-Aldrich siRNA and siRNA Panels for TOP2B  Sigma-Aldrich shRNA for TOP2B  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001068 REFSEQ mRNAs for TOP2B gene: NM_001068.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001068               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001068                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001068                                  untagged cDNA clone in CMV expression vector: NM_001068  Additional cDNA sequence: AB208879.1 AK296510.1 AK297171.1 AK307450.1 AK316492.1 BC021863.1 BC054482.1 CR600074.1 CR602047.1 CR606570.1 CR621848.1 M27504.1 U54831.1 X53662.1 X68060.1 Z15111.1 Z15115.1 24/26 DOTS entries (see all 26
): DT.95356606 DT.218512 DT.95356610 DT.95356602 DT.100036996 DT.102833608 DT.97767947 DT.95356591 DT.100818472 DT.97854739 DT.120925291 DT.95356601 DT.100818466 DT.414721 DT.92452497 DT.120925234 DT.92326151 DT.100748508 DT.40115718 DT.92452485 DT.95082622 DT.99963850 DT.120925304 DT.92450337 24/466 AceView cDNA sequences (see all 466
):BM977738 AA322534 BQ430963 AU124793 AW058486 T59934 BM835620 BQ440714 BQ216298 AI478835 BU680806 AA424448 AI874120 N93010 N63584 AA318144 BE503615 M27504 BC021863 BQ223532 AU130052 BQ433345 AV715768 BQ421366
highest scoring ESTs for TOP2B:X68060 M27504 Z15111 AA031925 AA031996 AA055323 AA092004 AA115016 AA115017 AA199624 Unigene Cluster for TOP2B: Topoisomerase (DNA) II beta 180kDa Hs.475733 [show with all ESTs]Unigene Representative Sequence: NM_001068
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000264331
|
Expression for TOP2B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TOP2B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TOP2B
1 / 2 / 3 4 probe-sets matching TOP2B gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTTACAAACT
SOURCE GeneReport for Unigene cluster: Hs.475733
Expression variation in blood from EXPOLDB for TOP2B |
Orthologs for TOP2B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TOP2B gene from 5/11 species (see all 11
)
About this table Species with no ortholog for TOP2B
ENSEMBL Gene Tree for TOP2B | Paralogs for TOP2B(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TOP2B gene
- TOP2A2
|
SNPs/Variants for TOP2B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TOP2B (up to first 250kb)
|
Disorders & Mutations for TOP2B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 126431
6 Novoseek disease relationships for TOP2B gene
About this table
2 PharmGKB disease relationships for TOP2B geneAbout this table
|
Medical News for TOP2B(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TOP2B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/125 PubMed articles for TOP2B gene (see all 125
):- Isolation of cDNA clones encoding the beta isozyme of human DNA topoisomerase II and localisation of the gene to chromosome 3p24. (PubMed id 1333583)1, 2, 3, 4 Jenkins J.R....Hickson I.D. (1992)
- Molecular cloning and characterization of the human topoisomerase IIalpha and IIbeta genes: evidence for isoform evolution through gene duplication. (PubMed id 10095062)1, 3, 4 Sng J.H.... Fisher L.M. (1999)
- Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220)3, 4 Nousiainen M.... Koerner R. (2006)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- Identification of functional nuclear export sequences in human topoisomerase IIalpha and beta. (PubMed id 12821127)3, 4 Mirski S.E.... Cole S.P. (2003)
- The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome. (PubMed id 12837248)3, 4 Kitagawa H....Kato S. (2003)
- Human cells express two differentially spliced forms of topoisomerase II beta mRNA. (PubMed id 8396237)3, 4 Davies S.L.... Hickson I.D. (1993)
- Novel HeLa topoisomerase II is the II beta isoform: complete coding sequence and homology with other type II topoisomerases. (PubMed id 8383537)3, 4 Austin C.A.... Fisher L.M. (1993)
- Topoisomerase II alpha and topoisomerase II beta genes: characterization and mapping to human chromosomes 17 and 3, respectively. (PubMed id 1309226)2, 3 Tan K.B....Mao J. (1992)
|
Search for TOP2B
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TOP2B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TOP2B
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TOP2B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TOP2B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TOP2B:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for TOP2B  (Topo II beta) |
| | | | Tocris compounds for TOP2B |
|
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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