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Aliases for TOLLIP-AS1 Gene

Subcategory (RNA class) for TOLLIP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TOLLIP-AS1 Gene

  • TOLLIP Antisense RNA 1 (Head To Head) 2 3 5
  • CTD-2245O6.1 3

External Ids for TOLLIP-AS1 Gene

Previous GeneCards Identifiers for TOLLIP-AS1 Gene

  • GC11P001332
  • GC11P001311
  • GC11P001312
  • GC11P001313
  • GC11P001314
  • GC11P001315

Summaries for TOLLIP-AS1 Gene

GeneCards Summary for TOLLIP-AS1 Gene

TOLLIP-AS1 (TOLLIP Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOLLIP-AS1 Gene

Genomics for TOLLIP-AS1 Gene

Regulatory Elements for TOLLIP-AS1 Gene

Enhancers for TOLLIP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G001382 1.5 FANTOM5 Ensembl ENCODE 16.9 +73.5 73483 1.7 PKNOX1 KLF17 GLIS2 EGR1 RELB CREM EGR2 SP3 ZEB2 ZNF398 TOLLIP-AS1 TOLLIP MOB2 DUSP8 BRSK2 IFITM10 GC11M001373 GC11P001384
GH11G001274 1 dbSUPER 20.1 -32.0 -31965 5.6 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 SP5 ZHX2 MIER2 TOLLIP-AS1 TOLLIP DRD4 ENSG00000255177 MUC5B ENSG00000255142 MOB2 ENSG00000255158 BRSK2 GC11M001275
GH11G001301 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9 -2.9 -2893 10.7 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 TOLLIP BRSK2 TOLLIP-AS1 DUSP8 LOC105376512
GH11G001297 1.7 FANTOM5 Ensembl ENCODE dbSUPER 7.9 -10.6 -10606 3.9 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 SP5 ZHX2 MIER2 DRD4 ENSG00000255142 ENSG00000255158 BRSK2 TOLLIP-AS1 TOLLIP DUSP8 LOC105376512 GC11M001275 PIR51627
GH11G001261 1.5 Ensembl ENCODE dbSUPER 7.6 -46.8 -46823 1.8 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 GLIS2 ZNF143 KDM4B SP3 TOLLIP-AS1 GC11M001267 GC11P001257 GC11P001258
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TOLLIP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TOLLIP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000035770 -8 1801 HDGF HNRNPUL1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143

Genomic Location for TOLLIP-AS1 Gene

Chromosome:
11
Start:
1,309,708 bp from pter
End:
1,310,707 bp from pter
Size:
1,000 bases
Orientation:
Plus strand

Genomic View for TOLLIP-AS1 Gene

Genes around TOLLIP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOLLIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOLLIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOLLIP-AS1 Gene

Proteins for TOLLIP-AS1 Gene

Post-translational modifications for TOLLIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOLLIP-AS1 Gene

Domains & Families for TOLLIP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TOLLIP-AS1 Gene

Function for TOLLIP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOLLIP-AS1 Gene

Localization for TOLLIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TOLLIP-AS1 Gene

Pathways & Interactions for TOLLIP-AS1 Gene

SuperPathways for TOLLIP-AS1 Gene

No Data Available

Interacting Proteins for TOLLIP-AS1 Gene

Gene Ontology (GO) - Biological Process for TOLLIP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TOLLIP-AS1 Gene

Transcripts for TOLLIP-AS1 Gene

mRNA/cDNA for TOLLIP-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TOLLIP-AS1 Gene

No ASD Table

Relevant External Links for TOLLIP-AS1 Gene

GeneLoc Exon Structure for
TOLLIP-AS1
ECgene alternative splicing isoforms for
TOLLIP-AS1

Expression for TOLLIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TOLLIP-AS1 Gene

genes like me logo Genes that share expression patterns with TOLLIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOLLIP-AS1 Gene

Orthologs for TOLLIP-AS1 Gene

Evolution for TOLLIP-AS1 Gene

ENSEMBL:
Gene Tree for TOLLIP-AS1 (if available)
TreeFam:
Gene Tree for TOLLIP-AS1 (if available)

No data available for Orthologs for TOLLIP-AS1 Gene

Paralogs for TOLLIP-AS1 Gene

No data available for Paralogs for TOLLIP-AS1 Gene

Variants for TOLLIP-AS1 Gene

Sequence variations from dbSNP and Humsavar for TOLLIP-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000040467 -- 1,308,036(+) AGCAT(C/T)GTGAA intron-variant, upstream-variant-2KB
rs1000646276 -- 1,309,505(+) GTGCT(A/G)CGGCG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001619386 -- 1,310,169(+) AGCCC(G/T)CCCTG nc-transcript-variant, upstream-variant-2KB
rs1001767604 -- 1,307,775(+) AGGCC(A/G)TCCAG intron-variant, upstream-variant-2KB
rs1002838967 -- 1,310,603(+) AAGCG(G/T)ACCCA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TOLLIP-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1014n100 CNV gain 25217958
dgv1537n54 CNV loss 21841781
esv2669189 CNV deletion 23128226
esv2743878 CNV deletion 23290073
esv2759794 CNV loss 17122850
nsv1053427 CNV gain 25217958
nsv467637 CNV loss 19166990
nsv552927 CNV loss 21841781

Relevant External Links for TOLLIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOLLIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TOLLIP-AS1 Gene

Disorders for TOLLIP-AS1 Gene

Relevant External Links for TOLLIP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TOLLIP-AS1

No disorders were found for TOLLIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOLLIP-AS1 Gene

Publications for TOLLIP-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for TOLLIP-AS1 Gene

Sources for TOLLIP-AS1 Gene

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