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Aliases for TOB2P1 Gene

Aliases for TOB2P1 Gene

  • Transducer Of ERBB2, 2 Pseudogene 1 2 3 5
  • Transducer Of ERBB2, 2 Pseudogene 2
  • CRA_a Protein 3
  • P373c6.3 3
  • TOB4p 3
  • TOB2P 3

External Ids for TOB2P1 Gene

Previous HGNC Symbols for TOB2P1 Gene

  • TOB2P

Previous GeneCards Identifiers for TOB2P1 Gene

  • GC06M027991

Summaries for TOB2P1 Gene

GeneCards Summary for TOB2P1 Gene

TOB2P1 (Transducer Of ERBB2, 2 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOB2P1 Gene

Genomics for TOB2P1 Gene

Regulatory Elements for TOB2P1 Gene

Enhancers for TOB2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G027791 1.8 FANTOM5 Ensembl ENCODE 3.6 +426.0 425993 3.6 CREB3L1 SLC30A9 ZNF143 SP3 TBX21 MEF2D SSRP1 RCOR2 NBN NR2C1 ZNF204P ZKSCAN3 ENSG00000271755 PGBD1 ZKSCAN4 ZKSCAN8 ZNF391 ZNF603P ZSCAN9 ZSCAN26
GH06G027862 1.7 Ensembl ENCODE dbSUPER 3.7 +350.3 350262 12.7 CREB3L1 MLX AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ZKSCAN3 ZKSCAN8 ZSCAN9 ZSCAN26 ZSCAN23 ZNF603P ZKSCAN4 ZNF391 PGBD1 ZNF192P1
GH06G028224 1.2 ENCODE 4.1 -6.4 -6390 2.1 PKNOX1 MLX CREB3L1 ARNT ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZNF603P ZKSCAN4 ZKSCAN3 ZNF192P1 NKAPL ZKSCAN8 ZSCAN31 TRIM27 ZSCAN9 HIST1H4K
GH06G027821 1.2 ENCODE 3.7 +395.0 395024 4.6 CREB3L1 DMAP1 YY1 ZNF143 SP3 TBX21 MEF2D RCOR2 NBN NR2C1 ZNF204P ZNF391 ENSG00000271755 HIST1H3J PGBD1 HIST1H1B HIST1H2BO HIST1H3I HIST1H4L ZNF603P
GH06G028220 1.2 FANTOM5 ENCODE 0.7 -1.8 -1766 0.8 HDGF PKNOX1 ATF1 ARNT SIN3A GATA2 CBX5 KDM4B GTF2B ZNF518A ZKSCAN4 ZKSCAN3 ZNF603P NKAPL ZKSCAN8 PGBD1 ZSCAN31 ZSCAN12 ZSCAN16 ZNF165
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TOB2P1 on UCSC Golden Path with GeneCards custom track

Promoters for TOB2P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195202 -71 801 HDGF CREB3L1 ARNT ARID4B E2F7 ZNF2 ZNF48 ELK1 ZNF143 KDM4B

Genomic Location for TOB2P1 Gene

Chromosome:
6
Start:
28,215,338 bp from pter
End:
28,218,929 bp from pter
Size:
3,592 bases
Orientation:
Minus strand

Genomic View for TOB2P1 Gene

Genes around TOB2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOB2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOB2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOB2P1 Gene

Proteins for TOB2P1 Gene

Post-translational modifications for TOB2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOB2P1 Gene

Domains & Families for TOB2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TOB2P1 Gene

Function for TOB2P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOB2P1 Gene

Localization for TOB2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TOB2P1 Gene

Pathways & Interactions for TOB2P1 Gene

SuperPathways for TOB2P1 Gene

No Data Available

Interacting Proteins for TOB2P1 Gene

Gene Ontology (GO) - Biological Process for TOB2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TOB2P1 Gene

Drugs & Compounds for TOB2P1 Gene

No Compound Related Data Available

Transcripts for TOB2P1 Gene

mRNA/cDNA for TOB2P1 Gene

(8) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TOB2P1 Gene

Transducer of ERBB2, 2 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TOB2P1 Gene

No ASD Table

Relevant External Links for TOB2P1 Gene

GeneLoc Exon Structure for
TOB2P1
ECgene alternative splicing isoforms for
TOB2P1

Expression for TOB2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TOB2P1 Gene

mRNA differential expression in normal tissues according to GTEx for TOB2P1 Gene

This gene is overexpressed in Testis (x8.0).

NURSA nuclear receptor signaling pathways regulating expression of TOB2P1 Gene:

TOB2P1

SOURCE GeneReport for Unigene cluster for TOB2P1 Gene:

Hs.161441
genes like me logo Genes that share expression patterns with TOB2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOB2P1 Gene

Orthologs for TOB2P1 Gene

Evolution for TOB2P1 Gene

ENSEMBL:
Gene Tree for TOB2P1 (if available)
TreeFam:
Gene Tree for TOB2P1 (if available)

No data available for Orthologs for TOB2P1 Gene

Paralogs for TOB2P1 Gene

No data available for Paralogs for TOB2P1 Gene

Variants for TOB2P1 Gene

Sequence variations from dbSNP and Humsavar for TOB2P1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000258966 -- 28,219,232(+) TTATA(A/C)ATGGA upstream-variant-2KB
rs1000593215 -- 28,220,694(+) TGGAA(C/T)AGGGG upstream-variant-2KB
rs1001443006 -- 28,220,053(+) CTAAT(C/T)ATAAA upstream-variant-2KB
rs1001831104 -- 28,215,663(+) AAAGA(A/C/G)GGGAC nc-transcript-variant
rs1003060669 -- 28,216,668(+) TCCTT(C/G)TGCAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TOB2P1 Gene

Variant ID Type Subtype PubMed ID
nsv527115 CNV loss 19592680
nsv830620 CNV loss 17160897

Relevant External Links for TOB2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOB2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TOB2P1 Gene

Disorders for TOB2P1 Gene

Relevant External Links for TOB2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TOB2P1

No disorders were found for TOB2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOB2P1 Gene

Publications for TOB2P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for TOB2P1 Gene

Sources for TOB2P1 Gene

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