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Aliases for TOB1-AS1 Gene

Subcategory (RNA class) for TOB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TOB1-AS1 Gene

  • TOB1 Antisense RNA 1 2 3 5
  • TOB1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TOB1-AS1 Gene

Previous GeneCards Identifiers for TOB1-AS1 Gene

  • GC17P048946

Summaries for TOB1-AS1 Gene

GeneCards Summary for TOB1-AS1 Gene

TOB1-AS1 (TOB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TOB1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOB1-AS1 Gene

Genomics for TOB1-AS1 Gene

GeneHancer (GH) Regulatory Elements for TOB1-AS1 Gene

Promoters and enhancers for TOB1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I050860 Promoter/Enhancer 2.7 UCNEbase EPDnew Ensembl ENCODE dbSUPER 564 -1.5 -1536 8.5 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 TOB1-AS1 TOB1 MBTD1 LUC7L3 ENSG00000247011 ENSG00000251665 WFIKKN2 COL1A1 RPL5P33
GH17I050889 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.5 +25.1 25065 4.8 FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF48 ETS1 YY1 TOB1-AS1 TOB1 LOC105371825 GC17M050874
GH17I050882 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.4 +17.2 17245 3.7 ATF1 FOXA2 ZFP64 ARID4B DMAP1 ZNF48 GATA2 ATF7 DEK SP5 ENSG00000247011 ENSG00000251665 WFIKKN2 TOB1-AS1 TOB1 TMEM92 GC17M050874 LOC105371825
GH17I050898 Enhancer 1.1 ENCODE dbSUPER 10.4 +32.4 32415 0.5 PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ZNF213 FOS ZNF202 MBTD1 LUC7L3 MYCBPAP ENSG00000251665 ENSG00000247011 UTP18 SPATA20 CACNA1G-AS1 TOB1-AS1 LOC105371825
GH17I050844 Enhancer 1 Ensembl ENCODE dbSUPER 7.2 -21.0 -20964 1.5 PKNOX1 MAZ USF1 TFE3 USF2 ZNF507 TEAD3 SREBF1 ZFHX2 GATA3 EPN3 MYCBPAP TOB1-AS1 RPL5P33 ENSG00000261976
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TOB1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TOB1-AS1 Gene

Genomic Locations for TOB1-AS1 Gene
chr17:50,866,679-50,909,737
(GRCh38/hg38)
Size:
43,059 bases
Orientation:
Plus strand
chr17:48,944,040-48,987,098
(GRCh37/hg19)

Genomic View for TOB1-AS1 Gene

Genes around TOB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOB1-AS1 Gene

Proteins for TOB1-AS1 Gene

Post-translational modifications for TOB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOB1-AS1 Gene

Domains & Families for TOB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TOB1-AS1 Gene

Function for TOB1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOB1-AS1 Gene

Localization for TOB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TOB1-AS1 Gene

Pathways & Interactions for TOB1-AS1 Gene

SuperPathways for TOB1-AS1 Gene

No Data Available

Interacting Proteins for TOB1-AS1 Gene

Gene Ontology (GO) - Biological Process for TOB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TOB1-AS1 Gene

Drugs & Compounds for TOB1-AS1 Gene

No Compound Related Data Available

Transcripts for TOB1-AS1 Gene

Unigene Clusters for TOB1-AS1 Gene

TOB1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TOB1-AS1 Gene

No ASD Table

Relevant External Links for TOB1-AS1 Gene

GeneLoc Exon Structure for
TOB1-AS1
ECgene alternative splicing isoforms for
TOB1-AS1

Expression for TOB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TOB1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TOB1-AS1 Gene:

Hs.641441
genes like me logo Genes that share expression patterns with TOB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TOB1-AS1 Gene

Orthologs for TOB1-AS1 Gene

Evolution for TOB1-AS1 Gene

ENSEMBL:
Gene Tree for TOB1-AS1 (if available)
TreeFam:
Gene Tree for TOB1-AS1 (if available)

No data available for Orthologs for TOB1-AS1 Gene

Paralogs for TOB1-AS1 Gene

No data available for Paralogs for TOB1-AS1 Gene

Variants for TOB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TOB1-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000010245 -- 50,866,349(+) C/T upstream_transcript_variant
rs1000062799 -- 50,866,419(+) G/A upstream_transcript_variant
rs1000306595 -- 50,865,808(+) A/G upstream_transcript_variant
rs1001745085 -- 50,865,176(+) C/G upstream_transcript_variant
rs1002183547 -- 50,865,876(+) G/A upstream_transcript_variant

Additional Variant Information for TOB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TOB1-AS1 Gene

Disorders for TOB1-AS1 Gene

Additional Disease Information for TOB1-AS1

No disorders were found for TOB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOB1-AS1 Gene

Publications for TOB1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TOB1-AS1 Gene

Sources for TOB1-AS1 Gene

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