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Aliases for TOB1-AS1 Gene

Subcategory (RNA class) for TOB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TOB1-AS1 Gene

  • TOB1 Antisense RNA 1 2 3 5
  • TOB1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TOB1-AS1 Gene

Previous GeneCards Identifiers for TOB1-AS1 Gene

  • GC17P048946

Summaries for TOB1-AS1 Gene

GeneCards Summary for TOB1-AS1 Gene

TOB1-AS1 (TOB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOB1-AS1 Gene

Genomics for TOB1-AS1 Gene

Regulatory Elements for TOB1-AS1 Gene

Enhancers for TOB1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F050861 1.2 ENCODE 14 -1.5 -1537 8.5 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 NFYC MEF2D CACNA1G-AS1 LOC105371824 LOC105371827 ENSG00000206824 ENSG00000249658 LINC02071 TOB1-AS1 ENSG00000247011 ENSG00000251665 WFIKKN2
GH17F050882 0.7 Ensembl ENCODE 10.4 +17.2 17246 3.7 ATF1 ZFP64 ARID4B DMAP1 ZNF48 ZNF121 GATA2 FOS KDM4B SP5 ENSG00000247011 ENSG00000251665 WFIKKN2 TOB1-AS1 TOB1 TMEM92 GC17M050874 LOC105371825
GH17F050889 1 Ensembl ENCODE 10.4 +25.1 25065 4.8 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 FOS ZNF263 SP3 TOB1-AS1 TOB1 LOC105371825 GC17M050874
GH17F050886 0.8 Ensembl ENCODE 10.3 +20.8 20841 1.4 PKNOX1 PRDM10 ZBTB33 ZIC2 TOB1-AS1 TOB1 LOC105371825 GC17M050874
GH17F050898 0.7 ENCODE 10.3 +32.4 32415 0.5 PKNOX1 MLX ZFP64 ARID4B DMAP1 ZNF48 FOS ZNF202 SP5 MXD4 ENSG00000247011 ENSG00000251665 COL1A1 UTP18 CACNA1G-AS1 TOB1-AS1 LOC105371825 ENSG00000262006
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TOB1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TOB1-AS1 Gene

Chromosome:
17
Start:
50,866,679 bp from pter
End:
50,909,737 bp from pter
Size:
43,059 bases
Orientation:
Plus strand

Genomic View for TOB1-AS1 Gene

Genes around TOB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TOB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TOB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOB1-AS1 Gene

Proteins for TOB1-AS1 Gene

Post-translational modifications for TOB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TOB1-AS1 Gene

Domains & Families for TOB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TOB1-AS1 Gene

Function for TOB1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TOB1-AS1 Gene

Localization for TOB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TOB1-AS1 Gene

Pathways & Interactions for TOB1-AS1 Gene

SuperPathways for TOB1-AS1 Gene

No Data Available

Interacting Proteins for TOB1-AS1 Gene

Gene Ontology (GO) - Biological Process for TOB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TOB1-AS1 Gene

Transcripts for TOB1-AS1 Gene

Unigene Clusters for TOB1-AS1 Gene

TOB1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TOB1-AS1 Gene

No ASD Table

Relevant External Links for TOB1-AS1 Gene

GeneLoc Exon Structure for
TOB1-AS1
ECgene alternative splicing isoforms for
TOB1-AS1

Expression for TOB1-AS1 Gene

mRNA expression in normal human tissues for TOB1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TOB1-AS1 Gene:

Hs.641441
genes like me logo Genes that share expression patterns with TOB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TOB1-AS1 Gene

Orthologs for TOB1-AS1 Gene

Evolution for TOB1-AS1 Gene

ENSEMBL:
Gene Tree for TOB1-AS1 (if available)
TreeFam:
Gene Tree for TOB1-AS1 (if available)

No data available for Orthologs for TOB1-AS1 Gene

Paralogs for TOB1-AS1 Gene

No data available for Paralogs for TOB1-AS1 Gene

Variants for TOB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TOB1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112426720 -- 50,866,607(+) TCCGG(A/G)CTCCA intron-variant, upstream-variant-2KB
rs112756487 -- 50,865,963(+) GAGGG(C/G)CCAGG intron-variant, upstream-variant-2KB
rs113347817 -- 50,866,491(+) ACCCC(A/G)GTCCC intron-variant, upstream-variant-2KB
rs1134637 -- 50,867,916(+) AAAAT(C/T)TGGTT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs114954245 -- 50,866,206(+) GCCTC(C/G)GGCAG intron-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for TOB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TOB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TOB1-AS1 Gene

Disorders for TOB1-AS1 Gene

Relevant External Links for TOB1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TOB1-AS1

No disorders were found for TOB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TOB1-AS1 Gene

Publications for TOB1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TOB1-AS1 Gene

Sources for TOB1-AS1 Gene

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