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Aliases for TNXA Gene

Aliases for TNXA Gene

  • Tenascin XA (Pseudogene) 2 3
  • XA 3 4
  • Tenascin XA Pseudogene 3
  • Tenascin XA 2
  • D6S103E 3
  • TN-XA 4
  • HXBL 3
  • TNX 3

External Ids for TNXA Gene

Previous HGNC Symbols for TNXA Gene

  • TNX

Previous GeneCards Identifiers for TNXA Gene

  • GC06U990124
  • GC06M032084
  • GC06M031977
  • GC06M031979

Summaries for TNXA Gene

GeneCards Summary for TNXA Gene

TNXA (Tenascin XA (Pseudogene)) is a Pseudogene. Diseases associated with TNXA include ehlers-danlos syndrome due to tenascin x deficiency and vesicoureteral reflux 8.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNXA Gene

Genomics for TNXA Gene

Regulatory Elements for TNXA Gene

Genomic Location for TNXA Gene

Chromosome:
6
Start:
32,008,420 bp from pter
End:
32,013,023 bp from pter
Size:
4,604 bases
Orientation:
Minus strand

Genomic View for TNXA Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

Proteins for TNXA Gene

  • Protein details for TNXA Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16473-TENXA_HUMAN
    Recommended name:
    Putative tenascin-XA
    Protein Accession:
    Q16473

    Protein attributes for TNXA Gene

    Size:
    311 amino acids
    Molecular mass:
    33740 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • TNX genes are located in the class III HLA region within a complex locus, named RCCX module, containing genes for RP1/STK19, C4B, CYP21B/CYP21A2 and TNXB. Most chromosomes bear 2 modules, but monomodular and trimodular haplotypes are common in most populations. The bimodular haplotype results from the duplication of the RCCX module, leading to a duplicate containing RP2/RP1 pseudogene, C4A, CYP21A/CYP21A1P and TNXA. TNXA is a duplicated section of TNXB and probably consists in a truncated pseudogene: it contains a 120 bp deletion causing a frameshift and a premature stop codon that probably render the gene non-functional. In some pathologies, an unequal crossover between monomodular and bimodular RCCX results in a chromosome with a TNXB-TNXA hybrid gene, arising from a fusion between the TNXB gene of a monomodular RCCX and the TNXA gene of a bimodular RCCX. The TNXB-TNXA hybrid may correspond to TNXB-Short gene and may produce a functional protein

neXtProt entry for TNXA Gene

Proteomics data for TNXA Gene at MOPED

Post-translational modifications for TNXA Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNXA Gene

Domains & Families for TNXA Gene

Protein Domains for TNXA Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TNXA Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q16473

UniProtKB/Swiss-Prot:

TENXA_HUMAN :
  • Contains 3 fibronectin type-III domains.
Domain:
  • Contains 3 fibronectin type-III domains.
genes like me logo Genes that share domains with TNXA: view

No data available for Gene Families for TNXA Gene

Function for TNXA Gene

Molecular function for TNXA Gene

GENATLAS Biochemistry:
tenascin-like XA,homologous to XBS,included in YA and overlapping CYP21P,both in opposite orientation,(see XA)

Gene Ontology (GO) - Molecular Function for TNXA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with TNXA: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNXA Gene

Localization for TNXA Gene

Gene Ontology (GO) - Cellular Components for TNXA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with TNXA: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TNXA Gene

Pathways & Interactions for TNXA Gene

SuperPathways for TNXA Gene

No Data Available

Interacting Proteins for TNXA Gene

Gene Ontology (GO) - Biological Process for TNXA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with TNXA: view

No data available for Pathways by source and SIGNOR curated interactions for TNXA Gene

Drugs & Compounds for TNXA Gene

(17) Drugs for TNXA Gene - From: NovoSeek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Argatroban Approved, Investigational Pharma Thrombin mediated fibrinogen cleavage inhibitor 18
Aspirin Approved Pharma Channel blocker 971
Bivalirudin Approved, Investigational Pharma 63
Heparin Approved, Investigational Pharma Antagonist 672,226
Nadroparin Approved Pharma 31

(16) Additional Compounds for TNXA Gene - From: NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Creatinine
  • 1-Methylglycocyamidine
  • 1-Methylhydantoin-2-imide
  • 2-Amino-1-methyl-1,5-dihydroimidazol-4-one
  • 2-Amino-1-methylimidazolin-4-one
  • Creatine anhydride
60-27-5
DERMATAN SULFATE
Endotoxin
FIBRINOGEN
gamma-Carboxyglutamic acid
53445-96-8
genes like me logo Genes that share compounds with TNXA: view

Transcripts for TNXA Gene

mRNA/cDNA for TNXA Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNXA Gene

Tenascin XA (pseudogene):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNXA Gene

No ASD Table

Relevant External Links for TNXA Gene

GeneLoc Exon Structure for
TNXA
ECgene alternative splicing isoforms for
TNXA

Expression for TNXA Gene

mRNA expression in normal human tissues for TNXA Gene

mRNA differential expression in normal tissues according to GTEx for TNXA Gene

This gene is overexpressed in Adrenal Gland (x37.3).

Protein differential expression in normal tissues from HIPED for TNXA Gene

This gene is overexpressed in Serum (54.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TNXA Gene



SOURCE GeneReport for Unigene cluster for TNXA Gene Hs.708061

mRNA Expression by UniProt/SwissProt for TNXA Gene

Q16473-TENXA_HUMAN
Tissue specificity: Expressed in the adrenal gland.
genes like me logo Genes that share expression patterns with TNXA: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein tissue co-expression partners for TNXA Gene

Orthologs for TNXA Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TNXA Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Tnxa 16
Species with no ortholog for TNXA:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TNXA Gene

ENSEMBL:
Gene Tree for TNXA (if available)
TreeFam:
Gene Tree for TNXA (if available)

Paralogs for TNXA Gene

(5) SIMAP similar genes for TNXA Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TNXA: view

No data available for Paralogs for TNXA Gene

Variants for TNXA Gene

Structural Variations from Database of Genomic Variants (DGV) for TNXA Gene

Variant ID Type Subtype PubMed ID
dgv1928e1 CNV Complex 17122850
nsv428141 CNV Gain+Loss 18775914
dgv1929e1 CNV Complex 17122850
dgv6604n71 CNV Loss 21882294
nsv284 CNV Loss 15895083
nsv5247 CNV Loss 18451855
dgv6607n71 CNV Loss 21882294
dgv6608n71 CNV Gain 21882294
dgv6610n71 CNV Gain 21882294
dgv6612n71 CNV Loss 21882294
dgv6613n71 CNV Loss 21882294
dgv6614n71 CNV Gain 21882294
dgv6615n71 CNV Gain 21882294
dgv6616n71 CNV Gain+Loss 21882294
esv28110 CNV Gain+Loss 19812545
dgv6617n71 CNV Gain+Loss 21882294
nsv10824 CNV Gain+Loss 18304495
dgv6620n71 CNV Gain 21882294
nsv819957 CNV Loss 19587683
dgv6621n71 CNV Gain 21882294
dgv6622n71 CNV Gain+Loss 21882294
nsv884617 CNV Gain 21882294
dgv20n31 CNV Duplication 19718026
nsv884626 CNV Loss 21882294
nsv884627 CNV Loss 21882294
dgv6623n71 CNV Loss 21882294
dgv6624n71 CNV Loss 21882294
dgv6625n71 CNV Gain 21882294
nsv823507 CNV Loss 20364138
dgv6626n71 CNV Gain+Loss 21882294
dgv6627n71 CNV Gain 21882294
dgv6628n71 CNV Loss 21882294
dgv6629n71 CNV Loss 21882294
nsv884657 CNV Gain 21882294
dgv6630n71 CNV Gain+Loss 21882294
dgv6631n71 CNV Loss 21882294
nsv823508 CNV Gain 20364138
nsv884663 CNV Gain 21882294
nsv884664 CNV Gain 21882294
nsv285 CNV Loss 15895083
esv2731825 CNV Deletion 23290073
nsv884665 CNV Loss 21882294

Relevant External Links for TNXA Gene

HapMap Linkage Disequilibrium report
TNXA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for TNXA Gene

Disorders for TNXA Gene

MalaCards: The human disease database

(3) MalaCards diseases for TNXA Gene - From: OMIM, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
ehlers-danlos syndrome due to tenascin x deficiency
  • ehlers-danlos-like syndrome due to tenascin-x deficiency
vesicoureteral reflux 8
  • vur8
scott syndrome
  • platelet factor x receptor deficiency
- elite association
Search TNXA in MalaCards View complete list of genes associated with diseases

Relevant External Links for TNXA

Genetic Association Database (GAD)
TNXA
Human Genome Epidemiology (HuGE) Navigator
TNXA
genes like me logo Genes that share disorders with TNXA: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TNXA Gene

Publications for TNXA Gene

  1. Weight-based heparin protocol using antifactor Xa monitoring. (PMID: 20172987) Smith M.L. … Wheeler K.E. (Am J Health Syst Pharm 2010) 23 67
  2. An anticoagulant RNA aptamer that inhibits proteinase-cofactor interactions within prothrombinase. (PMID: 20022942) Buddai S.K. … Krishnaswamy S. (J. Biol. Chem. 2010) 23 67
  3. History of rFVIIa therapy. (PMID: 20188400) Hedner U. (Thromb. Res. 2010) 23 67
  4. Contribution of exosite occupancy by heparin to the regulation of coagulation proteases by antithrombin. (PMID: 20024502) Yang L. … Rezaie A.R. (Thromb. Haemost. 2010) 23 67
  5. Unfractionated heparin dose requirements targeting intermediate intensity antifactor Xa concentration during pregnancy. (PMID: 20334457) Clark N.P. … Witt D.M. (Pharmacotherapy 2010) 23 67

Products for TNXA Gene

Sources for TNXA Gene

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