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Aliases for TNRC6C-AS1 Gene

Subcategory (RNA class) for TNRC6C-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TNRC6C-AS1 Gene

  • TNRC6C Antisense RNA 1 2 3

External Ids for TNRC6C-AS1 Gene

ORGUL Members for TNRC6C-AS1 Gene

Previous GeneCards Identifiers for TNRC6C-AS1 Gene

  • GC17M076105

Summaries for TNRC6C-AS1 Gene

GeneCards Summary for TNRC6C-AS1 Gene

TNRC6C-AS1 (TNRC6C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNRC6C-AS1 Gene

Genomics for TNRC6C-AS1 Gene

Genomic Location for TNRC6C-AS1 Gene

Start:
78,107,398 bp from pter
End:
78,111,799 bp from pter
Size:
4,402 bases
Orientation:
Minus strand

Genomic View for TNRC6C-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TNRC6C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNRC6C-AS1 Gene

No data available for Regulatory Elements for TNRC6C-AS1 Gene

Proteins for TNRC6C-AS1 Gene

Post-translational modifications for TNRC6C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNRC6C-AS1 Gene

Domains for TNRC6C-AS1 Gene

Gene Families for TNRC6C-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TNRC6C-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNRC6C-AS1 Gene

Function for TNRC6C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TNRC6C-AS1 Gene

Localization for TNRC6C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNRC6C-AS1 Gene

Pathways for TNRC6C-AS1 Gene

SuperPathways for TNRC6C-AS1 Gene

No Data Available

Interacting Proteins for TNRC6C-AS1 Gene

Gene Ontology (GO) - Biological Process for TNRC6C-AS1 Gene

None

No data available for Pathways by source for TNRC6C-AS1 Gene

Transcripts for TNRC6C-AS1 Gene

mRNA/cDNA for TNRC6C-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TNRC6C-AS1 Gene

No ASD Table

Relevant External Links for TNRC6C-AS1 Gene

GeneLoc Exon Structure for
TNRC6C-AS1
ECgene alternative splicing isoforms for
TNRC6C-AS1

Expression for TNRC6C-AS1 Gene

mRNA expression in normal human tissues for TNRC6C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNRC6C-AS1 Gene

This gene is overexpressed in Spleen (5.6), Brain - Spinal cord (cervical c-1) (4.2), and Whole Blood (4.1).
genes like me logo Genes that share expressions with TNRC6C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TNRC6C-AS1 Gene

Orthologs for TNRC6C-AS1 Gene

Evolution for TNRC6C-AS1 Gene

ENSEMBL:
Gene Tree for TNRC6C-AS1 (if available)
TreeFam:
Gene Tree for TNRC6C-AS1 (if available)

No data available for Orthologs for TNRC6C-AS1 Gene

Paralogs for TNRC6C-AS1 Gene

No data available for Paralogs for TNRC6C-AS1 Gene

Variants for TNRC6C-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNRC6C-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2613513 -- 78,109,650(+) ATTTC(C/T)GAAGC nc-transcript-variant
rs2748431 -- 78,109,673(-) ACTCA(C/T)GCCCG nc-transcript-variant
rs10715213 -- 78,110,083(+) AAAAA(-/A)TTCAC nc-transcript-variant
rs16970842 -- 78,111,312(+) CAGCT(A/G)GTACT nc-transcript-variant
rs34684892 -- 78,109,785(+) CATCC(A/G)GCCAG nc-transcript-variant

Relevant External Links for TNRC6C-AS1 Gene

HapMap Linkage Disequilibrium report
TNRC6C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TNRC6C-AS1 Gene

Disorders for TNRC6C-AS1 Gene

No disorders were found for TNRC6C-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TNRC6C-AS1 Gene

Publications for TNRC6C-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for TNRC6C-AS1 Gene

Sources for TNRC6C-AS1 Gene

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