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Aliases for TNRC6C-AS1 Gene

Subcategory (RNA class) for TNRC6C-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TNRC6C-AS1 Gene

  • TNRC6C Antisense RNA 1 2 3 5

External Ids for TNRC6C-AS1 Gene

ORGUL Members for TNRC6C-AS1 Gene

Previous GeneCards Identifiers for TNRC6C-AS1 Gene

  • GC17M076105

Summaries for TNRC6C-AS1 Gene

GeneCards Summary for TNRC6C-AS1 Gene

TNRC6C-AS1 (TNRC6C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNRC6C-AS1 Gene

Genomics for TNRC6C-AS1 Gene

Regulatory Elements for TNRC6C-AS1 Gene

Enhancers for TNRC6C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F078058 0.8 Ensembl ENCODE 17.1 +52.6 52586 1.3 BHLHE40 MAFG CEBPB ATF2 GABPA MEF2D ZNF316 JUND IKZF1 NFE2 TNRC6C-AS1 C17orf99 TK1 AFMID SYNGR2 TNRC6C UBE2V2P2 ENSG00000279600
GH17F078170 1 FANTOM5 ENCODE 12 -62.3 -62260 6.1 HDGF WRNIP1 ZNF48 YY1 GLIS2 ZNF143 KLF7 PAF1 SP3 ZHX2 AFMID C17orf99 TNRC6C-AS1 SYNGR2 TK1 TMC6 PGS1 SOCS3 GC17P078174
GH17F078136 0.5 ENCODE 11.9 -27.9 -27933 6.3 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 SYNGR2 AFMID TK1 TNRC6C-AS1 TMC8 TMC6 C17orf99
GH17F078197 1.6 FANTOM5 Ensembl ENCODE 11.5 -87.1 -87054 3.4 PKNOX1 ARNT FEZF1 YY1 ZNF548 PAF1 ZHX2 NCOA1 JUNB REST PGS1 TMEM235 SYNGR2 C17orf99 TNRC6C-AS1 ENSG00000200063 RNU6-625P SOCS3 TMC6 TMC8
GH17F078178 0.9 Ensembl ENCODE 11.2 -68.2 -68177 2.3 SMARCC1 CEBPB NR2F2 JUND POLR2A GABPB1 FOS ZNF600 C17orf99 TNRC6C-AS1 AFMID SYNGR2 GC17P078174
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNRC6C-AS1 Gene

Chromosome:
17
Start:
78,107,398 bp from pter
End:
78,111,799 bp from pter
Size:
4,402 bases
Orientation:
Minus strand

Genomic View for TNRC6C-AS1 Gene

Genes around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNRC6C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNRC6C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNRC6C-AS1 Gene

Proteins for TNRC6C-AS1 Gene

Post-translational modifications for TNRC6C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNRC6C-AS1 Gene

Domains & Families for TNRC6C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNRC6C-AS1 Gene

Function for TNRC6C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNRC6C-AS1 Gene

Localization for TNRC6C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNRC6C-AS1 Gene

Pathways & Interactions for TNRC6C-AS1 Gene

SuperPathways for TNRC6C-AS1 Gene

No Data Available

Interacting Proteins for TNRC6C-AS1 Gene

Gene Ontology (GO) - Biological Process for TNRC6C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNRC6C-AS1 Gene

Transcripts for TNRC6C-AS1 Gene

mRNA/cDNA for TNRC6C-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TNRC6C-AS1 Gene

No ASD Table

Relevant External Links for TNRC6C-AS1 Gene

GeneLoc Exon Structure for
TNRC6C-AS1
ECgene alternative splicing isoforms for
TNRC6C-AS1

Expression for TNRC6C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TNRC6C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNRC6C-AS1 Gene

This gene is overexpressed in Spleen (x5.6), Brain - Spinal cord (cervical c-1) (x4.2), and Whole Blood (x4.1).
genes like me logo Genes that share expression patterns with TNRC6C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TNRC6C-AS1 Gene

Orthologs for TNRC6C-AS1 Gene

Evolution for TNRC6C-AS1 Gene

ENSEMBL:
Gene Tree for TNRC6C-AS1 (if available)
TreeFam:
Gene Tree for TNRC6C-AS1 (if available)

No data available for Orthologs for TNRC6C-AS1 Gene

Paralogs for TNRC6C-AS1 Gene

No data available for Paralogs for TNRC6C-AS1 Gene

Variants for TNRC6C-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNRC6C-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1012373 -- 78,108,540(+) AGGGT(A/G)TGCAA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1048591 -- 78,107,603(-) AAAAT(C/G)TGAGT nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs10715213 -- 78,110,083(+) AAAAA(-/A)TTCAC nc-transcript-variant
rs111356644 -- 78,110,251(+) TGTCT(A/G)TAATC nc-transcript-variant
rs111675101 -- 78,110,265(+) GCACT(C/T)TGGGA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TNRC6C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833554 CNV gain+loss 17160897

Relevant External Links for TNRC6C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNRC6C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TNRC6C-AS1 Gene

Disorders for TNRC6C-AS1 Gene

Relevant External Links for TNRC6C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNRC6C-AS1

No disorders were found for TNRC6C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNRC6C-AS1 Gene

Publications for TNRC6C-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TNRC6C-AS1 Gene

Sources for TNRC6C-AS1 Gene

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