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Aliases for TNRC6C-AS1 Gene

Subcategory (RNA class) for TNRC6C-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TNRC6C-AS1 Gene

  • TNRC6C Antisense RNA 1 2 3 5

External Ids for TNRC6C-AS1 Gene

ORGUL Members for TNRC6C-AS1 Gene

Previous GeneCards Identifiers for TNRC6C-AS1 Gene

  • GC17M076105

Summaries for TNRC6C-AS1 Gene

GeneCards Summary for TNRC6C-AS1 Gene

TNRC6C-AS1 (TNRC6C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for TNRC6C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNRC6C-AS1 Gene

Genomics for TNRC6C-AS1 Gene

Regulatory Elements for TNRC6C-AS1 Gene

Enhancers for TNRC6C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H078170 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12 -62.3 -62260 6 HDGF YY1 GLIS2 ZNF143 KLF7 RUNX3 PAF1 SP3 ZHX2 REST AFMID C17orf99 TNRC6C-AS1 SYNGR2 TK1 TMC6 PGS1 SOCS3 GC17P078174
GH17H078136 1.6 Ensembl ENCODE dbSUPER 11.9 -27.9 -27933 6 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 ZNF143 FOS USP36 SYNGR2 TK1 AFMID TNRC6C-AS1 TMC8 TMC6 C17orf99
GH17H078410 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -302.9 -302930 8 HDAC1 PKNOX1 ATF1 NFIB ZNF195 RAD21 TCF12 EGR1 SCRT2 ZNF350 PGS1 SOCS3 USP36 DNAH17 TNRC6C-AS1 AFMID TK1 RNU6-638P LOC101928674 CYTH1
GH17H078197 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -87.1 -87054 3 CTCF PKNOX1 BATF ZIC2 CTBP1 GATA3 POLR2A ZNF548 PAF1 SMARCE1 PGS1 USP36 TMEM235 SYNGR2 C17orf99 TNRC6C-AS1 ENSG00000200063 RNU6-625P SEPT9 SOCS3
GH17H078120 2 FANTOM5 Ensembl ENCODE dbSUPER 7.9 -16.2 -16151 14 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 USP36 TMC8 TMC6 SYNGR2 AFMID TK1 TNRC6C-AS1 ENGASE PGS1 TNRC6C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNRC6C-AS1 Gene

Chromosome:
17
Start:
78,107,398 bp from pter
End:
78,111,799 bp from pter
Size:
4,402 bases
Orientation:
Minus strand

Genomic View for TNRC6C-AS1 Gene

Genes around TNRC6C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNRC6C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNRC6C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNRC6C-AS1 Gene

Proteins for TNRC6C-AS1 Gene

Post-translational modifications for TNRC6C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNRC6C-AS1 Gene

Domains & Families for TNRC6C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNRC6C-AS1 Gene

Function for TNRC6C-AS1 Gene

Phenotypes From GWAS Catalog for TNRC6C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNRC6C-AS1 Gene

Localization for TNRC6C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNRC6C-AS1 Gene

Pathways & Interactions for TNRC6C-AS1 Gene

SuperPathways for TNRC6C-AS1 Gene

No Data Available

Interacting Proteins for TNRC6C-AS1 Gene

Gene Ontology (GO) - Biological Process for TNRC6C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNRC6C-AS1 Gene

Drugs & Compounds for TNRC6C-AS1 Gene

No Compound Related Data Available

Transcripts for TNRC6C-AS1 Gene

mRNA/cDNA for TNRC6C-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TNRC6C-AS1 Gene

No ASD Table

Relevant External Links for TNRC6C-AS1 Gene

GeneLoc Exon Structure for
TNRC6C-AS1
ECgene alternative splicing isoforms for
TNRC6C-AS1

Expression for TNRC6C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNRC6C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNRC6C-AS1 Gene

This gene is overexpressed in Spleen (x5.6), Brain - Spinal cord (cervical c-1) (x4.2), and Whole Blood (x4.1).
genes like me logo Genes that share expression patterns with TNRC6C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNRC6C-AS1 Gene

Orthologs for TNRC6C-AS1 Gene

Evolution for TNRC6C-AS1 Gene

ENSEMBL:
Gene Tree for TNRC6C-AS1 (if available)
TreeFam:
Gene Tree for TNRC6C-AS1 (if available)

No data available for Orthologs for TNRC6C-AS1 Gene

Paralogs for TNRC6C-AS1 Gene

No data available for Paralogs for TNRC6C-AS1 Gene

Variants for TNRC6C-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNRC6C-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000026329 -- 78,107,351(+) TCTTA(A/C)TGTTT downstream-variant-500B, utr-variant-3-prime
rs1000422928 -- 78,110,042(+) GCCTG(C/G)GGAAC nc-transcript-variant
rs1000650702 -- 78,107,537(+) GTCCC(A/G)CTGCA nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1001123485 -- 78,110,438(+) AACTG(C/T)ACTCC nc-transcript-variant
rs1001485727 -- 78,107,043(+) CATTG(C/G)CATTA downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for TNRC6C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833554 CNV gain+loss 17160897

Relevant External Links for TNRC6C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNRC6C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TNRC6C-AS1 Gene

Disorders for TNRC6C-AS1 Gene

Relevant External Links for TNRC6C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNRC6C-AS1

No disorders were found for TNRC6C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNRC6C-AS1 Gene

Publications for TNRC6C-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for TNRC6C-AS1 Gene

Sources for TNRC6C-AS1 Gene

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