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Aliases for TNRC18P1 Gene

Aliases for TNRC18P1 Gene

  • Trinucleotide Repeat Containing 18 Pseudogene 1 2 3 5

External Ids for TNRC18P1 Gene

Previous GeneCards Identifiers for TNRC18P1 Gene

  • GC04M141564

Summaries for TNRC18P1 Gene

GeneCards Summary for TNRC18P1 Gene

TNRC18P1 (Trinucleotide Repeat Containing 18 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNRC18P1 Gene

Genomics for TNRC18P1 Gene

Regulatory Elements for TNRC18P1 Gene

Enhancers for TNRC18P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G140764 0.9 ENCODE 10 -119.5 -119503 0.1 PKNOX1 ZNF493 ZEB1 ZNF121 ZNF138 ZNF354C KLF7 ZNF202 ZBTB11 NFYC MAML3 ELMOD2 ENSG00000248335 SCOC-AS1 TNRC18P1 ENSG00000273472 ENSG00000222613
GH04G139890 0.8 Ensembl ENCODE 11.2 +754.4 754393 1.0 CTCF JUN GLIS1 FOS ZNF548 ZIC2 RAD21 TNRC18P1 NAA15 ELMOD2 MAML3 LOC105377452 GC04M139789
GH04G140652 0.9 Ensembl ENCODE 0.4 -8.1 -8115 2.3 PKNOX1 MAFG REST RAD21 YY1 ZNF316 MAFK PRDM1 EMSY UCP1 ENSG00000248335 TBC1D9 TNRC18P1 RNY1P14 GC04M140701
GH04G140661 0.6 ENCODE 0.4 -16.8 -16768 0.7 JUND FOXA2 CEBPA SCRT2 CEBPB FOS CEBPG ENSG00000248335 TNRC18P1 RNY1P14 GC04M140701
GH04G140666 0.6 dbSUPER 0.3 -22.3 -22337 2.4 JUND RFX1 HNF4A FOS BMI1 ATF2 NR2F2 ENSG00000248335 TBC1D9 TNRC18P1 GC04M140701 RNY1P14
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNRC18P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNRC18P1 Gene

Chromosome:
4
Start:
140,641,191 bp from pter
End:
140,645,489 bp from pter
Size:
4,299 bases
Orientation:
Minus strand

Genomic View for TNRC18P1 Gene

Genes around TNRC18P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNRC18P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNRC18P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNRC18P1 Gene

Proteins for TNRC18P1 Gene

Post-translational modifications for TNRC18P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNRC18P1 Gene

Domains & Families for TNRC18P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNRC18P1 Gene

Function for TNRC18P1 Gene

Phenotypes for TNRC18P1 Gene

GenomeRNAi human phenotypes for TNRC18P1:
genes like me logo Genes that share phenotypes with TNRC18P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNRC18P1 Gene

Localization for TNRC18P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNRC18P1 Gene

Pathways & Interactions for TNRC18P1 Gene

SuperPathways for TNRC18P1 Gene

No Data Available

Interacting Proteins for TNRC18P1 Gene

Gene Ontology (GO) - Biological Process for TNRC18P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNRC18P1 Gene

Drugs & Compounds for TNRC18P1 Gene

No Compound Related Data Available

Transcripts for TNRC18P1 Gene

mRNA/cDNA for TNRC18P1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNRC18P1 Gene

TNRC18P1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNRC18P1 Gene

No ASD Table

Relevant External Links for TNRC18P1 Gene

GeneLoc Exon Structure for
TNRC18P1
ECgene alternative splicing isoforms for
TNRC18P1

Expression for TNRC18P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNRC18P1 Gene

mRNA differential expression in normal tissues according to GTEx for TNRC18P1 Gene

This gene is overexpressed in Breast - Mammary Tissue (x11.9).

NURSA nuclear receptor signaling pathways regulating expression of TNRC18P1 Gene:

TNRC18P1

SOURCE GeneReport for Unigene cluster for TNRC18P1 Gene:

Hs.676500
genes like me logo Genes that share expression patterns with TNRC18P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNRC18P1 Gene

Orthologs for TNRC18P1 Gene

Evolution for TNRC18P1 Gene

ENSEMBL:
Gene Tree for TNRC18P1 (if available)
TreeFam:
Gene Tree for TNRC18P1 (if available)

No data available for Orthologs for TNRC18P1 Gene

Paralogs for TNRC18P1 Gene

No data available for Paralogs for TNRC18P1 Gene

Variants for TNRC18P1 Gene

Sequence variations from dbSNP and Humsavar for TNRC18P1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000182220 -- 140,643,477(+) GCTGC(C/T)GGGCA intron-variant, upstream-variant-2KB
rs1000261396 -- 140,643,552(+) TGACA(C/T)TTCTA intron-variant, upstream-variant-2KB
rs1000518122 -- 140,644,489(+) GGGCC(A/G)GCAGC intron-variant, upstream-variant-2KB
rs10015224 -- 140,643,771(+) GTCTG(A/G)GCACT intron-variant, upstream-variant-2KB
rs10017841 -- 140,644,194(+) GGGCG(A/G)CATAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TNRC18P1 Gene

Variant ID Type Subtype PubMed ID
nsv822750 CNV gain 20364138
nsv830089 CNV gain+loss 17160897
nsv949826 CNV deletion 24416366

Relevant External Links for TNRC18P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNRC18P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TNRC18P1 Gene

Disorders for TNRC18P1 Gene

Relevant External Links for TNRC18P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNRC18P1

No disorders were found for TNRC18P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNRC18P1 Gene

Publications for TNRC18P1 Gene

No publications were found for TNRC18P1 Gene.

Products for TNRC18P1 Gene

Sources for TNRC18P1 Gene

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