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Aliases for TNR-IT1 Gene

Subcategory (RNA class) for TNR-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TNR-IT1 Gene

  • TNR Intronic Transcript 1 2 3 5
  • TNR Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TNR-IT1 Gene

Previous GeneCards Identifiers for TNR-IT1 Gene

  • GC00U933267

Summaries for TNR-IT1 Gene

GeneCards Summary for TNR-IT1 Gene

TNR-IT1 (TNR Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNR-IT1 Gene

Genomics for TNR-IT1 Gene

Regulatory Elements for TNR-IT1 Gene

Enhancers for TNR-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G175513 1.2 Ensembl ENCODE dbSUPER 0.3 +42.1 42132 1.6 JUN MAX REST PLRG1 ZIC2 RAD21 SMARCA4 GATA2 POLR2A FOXP2 MRPS14 TNR TNR-IT1 GC01P175473
GH01G175548 0.5 ENCODE 0.4 +8.0 7961 0.9 GATA2 JUN FOS TNR TNR-IT1 GC01P175473
GH01G175536 0.6 ENCODE 0.3 +20.3 20337 1.0 ZNF263 ESRRA JUN MAX NR2F2 JUND GATA2 FOS HNF4A TNR-IT1 GC01P175473
GH01G175519 0.6 dbSUPER 0.3 +35.5 35540 2.6 MAFF ZNF316 ZSCAN26 MAFG EMSY MAFK TNR TNR-IT1 GC01P175473
GH01G175523 0.3 FANTOM5 0.3 +33.0 33029 0.3 TNR-IT1 GC01P175473
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNR-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNR-IT1 Gene

175,538,775 bp from pter
175,556,818 bp from pter
18,044 bases
Minus strand

Genomic View for TNR-IT1 Gene

Genes around TNR-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNR-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNR-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TNR-IT1 Gene

Proteins for TNR-IT1 Gene

Post-translational modifications for TNR-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNR-IT1 Gene

Domains & Families for TNR-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNR-IT1 Gene

Function for TNR-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNR-IT1 Gene

Localization for TNR-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNR-IT1 Gene

Pathways & Interactions for TNR-IT1 Gene

SuperPathways for TNR-IT1 Gene

No Data Available

Interacting Proteins for TNR-IT1 Gene

Gene Ontology (GO) - Biological Process for TNR-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TNR-IT1 Gene

Drugs & Compounds for TNR-IT1 Gene

No Compound Related Data Available

Transcripts for TNR-IT1 Gene

mRNA/cDNA for TNR-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TNR-IT1 Gene

No ASD Table

Relevant External Links for TNR-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TNR-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNR-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for TNR-IT1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with TNR-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNR-IT1 Gene

Orthologs for TNR-IT1 Gene

Evolution for TNR-IT1 Gene

Gene Tree for TNR-IT1 (if available)
Gene Tree for TNR-IT1 (if available)

No data available for Orthologs for TNR-IT1 Gene

Paralogs for TNR-IT1 Gene

No data available for Paralogs for TNR-IT1 Gene

Variants for TNR-IT1 Gene

Relevant External Links for TNR-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNR-IT1 Gene

Disorders for TNR-IT1 Gene

No disorders were found for TNR-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TNR-IT1 Gene

Publications for TNR-IT1 Gene

No publications were found for TNR-IT1 Gene.

Products for TNR-IT1 Gene

Sources for TNR-IT1 Gene

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