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Aliases for TNR-IT1 Gene

Subcategory (RNA class) for TNR-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TNR-IT1 Gene

  • TNR Intronic Transcript 1 2 3 5
  • TNR Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TNR-IT1 Gene

Previous GeneCards Identifiers for TNR-IT1 Gene

  • GC00U933267

Summaries for TNR-IT1 Gene

GeneCards Summary for TNR-IT1 Gene

TNR-IT1 (TNR Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TNR-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNR-IT1 Gene

Genomics for TNR-IT1 Gene

GeneHancer (GH) Regulatory Elements for TNR-IT1 Gene

Promoters and enhancers for TNR-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I175572 Enhancer 1 ENCODE 0.4 -17.3 -17256 2.5 PKNOX1 FEZF1 GLI4 ZNF2 GLIS2 ZNF213 ZNF302 KLF7 KLF13 YY2 GC01M175557 MRPS14 TNR TNR-IT1
GH01I175513 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +42.1 42131 1.6 JUN MAX ZIC2 RCOR1 PRDM10 FOXP2 MYC CHD2 TNR GC01P175473 TNR-IT1
GH01I175564 Enhancer 0.5 ENCODE 0.4 -8.1 -8050 0 OSR2 PRDM10 FEZF1 ZNF843 TNR-IT1 GC01M175557 TNR
GH01I175536 Enhancer 0.5 ENCODE 0.3 +20.3 20336 1 ESRRA JUND RXRA JUN MAX HNF4A NR2F2 TNR-IT1 GC01P175473 TNR
GH01I175519 Enhancer 0.5 dbSUPER 0.3 +35.5 35539 2.6 MAFF ZNF316 ZSCAN26 MAFG MAFK EMSY TNR TNR-IT1 GC01P175473
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TNR-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNR-IT1 Gene

Genomic Locations for TNR-IT1 Gene
chr1:175,538,775-175,556,818
(GRCh38/hg38)
Size:
18,044 bases
Orientation:
Minus strand
chr1:175,507,911-175,525,954
(GRCh37/hg19)

Genomic View for TNR-IT1 Gene

Genes around TNR-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNR-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNR-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TNR-IT1 Gene

Proteins for TNR-IT1 Gene

Post-translational modifications for TNR-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNR-IT1 Gene

Domains & Families for TNR-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNR-IT1 Gene

Function for TNR-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNR-IT1 Gene

Localization for TNR-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNR-IT1 Gene

Pathways & Interactions for TNR-IT1 Gene

SuperPathways for TNR-IT1 Gene

No Data Available

Interacting Proteins for TNR-IT1 Gene

Gene Ontology (GO) - Biological Process for TNR-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNR-IT1 Gene

Drugs & Compounds for TNR-IT1 Gene

No Compound Related Data Available

Transcripts for TNR-IT1 Gene

mRNA/cDNA for TNR-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TNR-IT1 Gene

No ASD Table

Relevant External Links for TNR-IT1 Gene

GeneLoc Exon Structure for
TNR-IT1
ECgene alternative splicing isoforms for
TNR-IT1

Expression for TNR-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNR-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for TNR-IT1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with TNR-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNR-IT1 Gene

Orthologs for TNR-IT1 Gene

Evolution for TNR-IT1 Gene

ENSEMBL:
Gene Tree for TNR-IT1 (if available)
TreeFam:
Gene Tree for TNR-IT1 (if available)

No data available for Orthologs for TNR-IT1 Gene

Paralogs for TNR-IT1 Gene

No data available for Paralogs for TNR-IT1 Gene

Variants for TNR-IT1 Gene

Additional Variant Information for TNR-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNR-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNR-IT1 Gene

Disorders for TNR-IT1 Gene

No disorders were found for TNR-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TNR-IT1 Gene

Publications for TNR-IT1 Gene

No publications were found for TNR-IT1 Gene.

Products for TNR-IT1 Gene

Sources for TNR-IT1 Gene

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