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Aliases for TNR-IT1 Gene

Subcategory (RNA class) for TNR-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TNR-IT1 Gene

  • TNR Intronic Transcript 1 2 3 5
  • TNR Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TNR-IT1 Gene

Previous GeneCards Identifiers for TNR-IT1 Gene

  • GC00U933267

Summaries for TNR-IT1 Gene

GeneCards Summary for TNR-IT1 Gene

TNR-IT1 (TNR Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TNR-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNR-IT1 Gene

Genomics for TNR-IT1 Gene

Regulatory Elements for TNR-IT1 Gene

Enhancers for TNR-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H175572 1 ENCODE 14.9 -17.3 -17256 2.5 PKNOX1 FEZF1 GLI4 ZNF2 GLIS2 ZNF302 KLF7 YY2 TSHZ1 ZNF488 MRPS14 TNR-IT1 LINC01657 TNR GC01M175557
GH01H175513 1.1 Ensembl ENCODE dbSUPER 0.3 +42.1 42132 1.6 JUN MAX PRDM10 RCOR1 FOXP2 ZIC2 MYC TNR TNR-IT1 GC01P175473
GH01H175564 0.5 ENCODE 0.4 -8.1 -8050 0 OSR2 FEZF1 PRDM10 ZNF843 TNR-IT1 GC01M175557
GH01H175536 0.6 ENCODE 0.3 +20.3 20337 1 ESRRA JUND JUN MAX HNF4A NR2F2 TNR-IT1 GC01P175473
GH01H175519 0.6 dbSUPER 0.3 +35.5 35540 2.6 MAFF ZNF316 ZSCAN26 MAFG EMSY MAFK TNR TNR-IT1 GC01P175473
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNR-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TNR-IT1 Gene

Genomic Locations for TNR-IT1 Gene
18,044 bases
Minus strand

Genomic View for TNR-IT1 Gene

Genes around TNR-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNR-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNR-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TNR-IT1 Gene

Proteins for TNR-IT1 Gene

Post-translational modifications for TNR-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNR-IT1 Gene

Domains & Families for TNR-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNR-IT1 Gene

Function for TNR-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNR-IT1 Gene

Localization for TNR-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TNR-IT1 Gene

Pathways & Interactions for TNR-IT1 Gene

SuperPathways for TNR-IT1 Gene

No Data Available

Interacting Proteins for TNR-IT1 Gene

Gene Ontology (GO) - Biological Process for TNR-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TNR-IT1 Gene

Drugs & Compounds for TNR-IT1 Gene

No Compound Related Data Available

Transcripts for TNR-IT1 Gene

mRNA/cDNA for TNR-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TNR-IT1 Gene

No ASD Table

Relevant External Links for TNR-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TNR-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNR-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for TNR-IT1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with TNR-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNR-IT1 Gene

Orthologs for TNR-IT1 Gene

Evolution for TNR-IT1 Gene

Gene Tree for TNR-IT1 (if available)
Gene Tree for TNR-IT1 (if available)

No data available for Orthologs for TNR-IT1 Gene

Paralogs for TNR-IT1 Gene

No data available for Paralogs for TNR-IT1 Gene

Variants for TNR-IT1 Gene

Relevant External Links for TNR-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNR-IT1 Gene

Disorders for TNR-IT1 Gene

No disorders were found for TNR-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TNR-IT1 Gene

Publications for TNR-IT1 Gene

No publications were found for TNR-IT1 Gene.

Products for TNR-IT1 Gene

Sources for TNR-IT1 Gene

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