Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TNR Gene

protein-coding   GIFtS: 63
GCID: GC01M175291

tenascin R

 Explore 16 diseases affiliated with
TNR via our new
 Human Malady Compendium 
Biological research products
for TNR
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 4

Aliases
Tenascin R1 2     Tenascin R (Restrictin, Janusin)2
TN-R2 3     Tenascin-R1
Janusin3     Janusin3
Restrictin3     Restrictin3

External Ids:    HGNC: 119531   Entrez Gene: 71432   Ensembl: ENSG000001161477   OMIM: 6019955   UniProtKB: Q927523   
ORGUL members:    fRNAdb10:FR225370      
H-InvDB:HIT000325769    
NCBI:Y13359    
NONCODE:n338375    
RNAdb:HIV1373    

Export aliases for TNR gene to outside databases

Previous GC identifers: GC01M172816 GC01M170720 GC01M171872 GC01M172531 GC01M172023 GC01M173558 GC01M146518


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TNR:
Tenascin-R (TNR) is an extracellular matix protein expressed primarily in the central nervous system. It is a member of
the tenascin (TN) gene family, which includes at least 3 genes in mammals: TNC (or hexabrachion; MIM 187380), TNX
(TNXB; MIM 600985), and TNR (Erickson, 1993 (PubMed 7694605)). The genes are expressed in distinct tissues at
different times during embryonic development and are present in adult tissues.(supplied by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: TENR_HUMAN, Q92752
Function: Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix
components. These interactions can influence cellular behavior by either evoking a stable adhesion and
differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits
RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell
detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation.
Interaction with CNTN1 induces a repulsion of neurons and an inhibition of neurite outgrowth. Interacts with SCN2B may
play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier. TNR-linked
chondroitin sulfate glycosaminoglycans are involved in the interaction with FN1 and mediate inhibition of cell
adhesion and neurite outgrowth. The highly regulated addition of sulfated carbohydrate structure may modulate the
adhesive properties of TNR over the course of development and during synapse maintenance (By similarity)

Gene Wiki entry for TNR (Tenascin-R)

fRNAdb sequence ontology for TNR:
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for TNR

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004487.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TNR gene promoter:
         LHX3b/Lhx3b   Sox5   STAT1   RP58   ATF-2   Olf-1   HEN1   CRE-BP1   LHX3a/Lhx3a   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTNR promoter sequence
   Search SABiosciences Chromatin IP Primers for TNR

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNR


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q24   Ensembl cytogenetic band:  1q25.1   HGNC cytogenetic band: 1q24

TNR Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TNR gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M175291:  view genomic region     (about GC identifiers)

Start:
175,291,935 bp from pter      End:
175,712,906 bp from pter
Size:
420,972 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for TNR

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TENR_HUMAN, Q92752 (See protein sequence)
Recommended Name: Tenascin-R precursor  
Size: 1358 amino acids; 149562 Da
Subunit: Forms oligomers. Interacts with CNTN1, TNC, and FN1. Interacts with BCAN and ACAN in a calcium-dependent
manner. Interacts with SCN2B, PTPRZ1, and CSPG3 (By similarity)
Subcellular location: Secreted, extracellular space, extracellular matrix
Secondary accessions: C9J563 Q15568 Q5R3G0
Alternative splicing: 2 isoforms:  Q92752-1   Q92752-2   

Explore the universe of human proteins at neXtProt for TNR: NX_Q92752

Post-translational modifications:

  • Contains N-linked oligosaccharides, O-linked sialylated structures and O-linked chondroitin sulfate glycosaminoglycans.
  • Contains N-linked oligosaccharides with a sulfated carbohydrate structure (By similarity). O-glycosylated on Thr-36 or
    Thr-37 with a core 1 or possibly core 8 glycan1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q92752

  • TNR Protein expression data from MOPED and PaxDb:    About this image 
    TNR Protein Expression
    REFSEQ proteins: NP_003276.3  
    ENSEMBL proteins: 
     ENSP00000356646   ENSP00000403413   ENSP00000263525  

    Human Recombinant Protein Products for TNR: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    R&D Systems Recombinant & Natural Proteins for TNR (Tenascin R)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: TNR
    OriGene Protein Over-expression Lysate: TNR
    OriGene Custom Protein Services for TNR 
    GenScript Custom Purified and Recombinant Proteins Services for TNR
    Novus Biologicals TNR Protein
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TNR

    Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm IDA--
    GO:0009986cell surface IEA--

    TNR for ontologies           About GeneDecksing



    TNR Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    R&D Systems Antibodies for TNR (Tenascin R)
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for TNR 
    GenScript Superior Antibodies for TNR
    Novus Biologicals TNR Antibodies
    Abcam antibodies for TNR 
    Uscn Antibodies for TNR
    Search ThermoFisher Antibodies for TNR

    Assay Products for TNR: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for TNR
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for TNR


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TNR for domains           About GeneDecksing

    5/7 InterPro domains/families (see all 7):
     IPR003961 Fibronectin_type3
     IPR013032 EGF-like_CS
     IPR014715 Fibrinogen_a/b/g_C_2
     IPR002181 Fibrinogen_a/b/g_C_dom
     IPR013111 EGF_extracell

    Graphical View of Domain Structure for InterPro Entry Q92752

    ProtoNet protein and cluster: Q92752

    1 Blocks protein family: IPB002181 Fibrinogen

    UniProtKB/Swiss-Prot: TENR_HUMAN, Q92752
    Domain: The EGF-like domains mediate interaction with CNTN1. The fibronectin type-III domains 3-5 mediate interaction
    with BCAN. The fibronectin type-III domains 1-2 and 7-9 mediate interaction with SCN2B (By similarity)
    Similarity: Belongs to the tenascin family
    Similarity: Contains 5 EGF-like domains
    Similarity: Contains 1 fibrinogen C-terminal domain
    Similarity: Contains 9 fibronectin type-III domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: TENR_HUMAN, Q92752
    Function: Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix
    components. These interactions can influence cellular behavior by either evoking a stable adhesion and
    differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits
    RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell
    detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation.
    Interaction with CNTN1 induces a repulsion of neurons and an inhibition of neurite outgrowth. Interacts with SCN2B may
    play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier. TNR-linked
    chondroitin sulfate glycosaminoglycans are involved in the interaction with FN1 and mediate inhibition of cell
    adhesion and neurite outgrowth. The highly regulated addition of sulfated carbohydrate structure may modulate the
    adhesive properties of TNR over the course of development and during synapse maintenance (By similarity)

         Genatlas biochemistry entry for TNR:
    tenascin-R,extracellular neural recognition molecule,expressed in glia and some neuronal subtypes,including horizontal
    cells in retina,putative ortholog of mouse loop-tail,interacting with fibronectin-dependent cell attachment and
    interaction,inhibitor of CD3-mediated T cell interaction

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005102receptor binding IEA--
    GO:0005178integrin binding ----
    GO:0005515protein binding ----
         
    TNR for ontologies           About GeneDecksing


    Phenotypes:
         2 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Tnr):
     nervous system  no phenotypic analysis 

    TNR for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Tnrtm1Msch for TNR
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TNR 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: TNR
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TNR
    8/12 QIAGEN miScript miRNA Assays for microRNAs that regulate TNR (see all 12):
    hsa-miR-3163 hsa-miR-205 hsa-miR-922 hsa-miR-7-2* hsa-miR-516b* hsa-miR-1279 hsa-miR-340 hsa-miR-656
    SwitchGear 3'UTR luciferase reporter plasmidTNR 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNR (see all 7)
    OriGene shRNA RFP: TNR
    OriGene siRNA: TNR
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNR
    Sirion Biotech Custom design and validation of potent shRNA sequences against TNR 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for TNR
    Sirion Biotech Customized adenovirus for overexpression of TNR 
    Sirion Biotech Customized adenovirus for potent knockdown of TNR

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNR (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNR
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TNR (NM_005958)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TNR
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNR 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for TNR
    Search LifeMap BioReagents cell lines for TNR
    Sirion Biotech Customized stable knockdown cell line services for TNR 
    Sirion Biotech Customized inducible knockdown cell line services for TNR
    Sirion Biotech Customized stable overexpressing cell line services for TNR
    Sirion Biotech Customized inducible overexpressing cell line services for TNR

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNR


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cell adhesion_Cell-matrix glycoconjugates
    Cell adhesion_Cell-matrix glycoconjugates1.00
    Cell adhesion Cell-matrix glycoconjugates0.97
    2Focal Adhesion
    Focal Adhesion1.00
    Focal adhesion0.66
    3ECM-receptor interaction
    ECM-receptor interaction1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for TNR
        Cell adhesion Cell-matrix glycoconjugates


    1 GeneGo (Thomson Reuters) Pathway for TNR
        Cell adhesion Cell-matrix glycoconjugates

    1 BioSystems Pathway for TNR 
        Focal Adhesion


    2         Kegg Pathways  (Kegg details for TNR):
        Focal adhesion
    ECM-receptor interaction


    TNR for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TNR

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/39 Interacting proteins for TNR (Q927523 ENSP000002635254) via UniProtKB, MINT, STRING, and/or I2D (see all 39)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CNTN1Q128603, ENSP000003256604I2D: score=1 STRING: ENSP00000325660
    MYCP011063, ENSP000003672074I2D: score=1 STRING: ENSP00000367207
    NFASCO948563, ENSP000003531544I2D: score=1 STRING: ENSP00000353154
    SIGLEC1Q9BZZ23, ENSP000003411414I2D: score=1 STRING: ENSP00000341141
    BCANQ96GW73, ENSP000003312104I2D: score=2 STRING: ENSP00000331210
    About this table

    Gene Ontology (GO): 5/20 biological process terms (GO ID links to tree view) (see all 20):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007155cell adhesion NAS8940128
    GO:0007158neuron cell-cell adhesion IEA--
    GO:0007162negative regulation of cell adhesion ----
    GO:0007165signal transduction IEA--
    GO:0007411axon guidance NAS8940128

    TNR for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TNR for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TNR

    2 HMDB Compounds for TNR    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    SodiumSodium (see all 2)7440-23-5--
    6 Novoseek chemical compound relationships for TNR gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    neurocan 88.3 7 9507007 (2), 16899820 (2), 10483914 (1), 18696101 (1) (see all 5)
    chondroitin sulfate 38.9 1 18696101 (1)
    calcium 0 2 9507007 (1), 17537973 (1)
    tyrosine 0 1 17068968 (1)
    testosterone 0 3 7539301 (2), 8933378 (1)
    polysaccharide 0 3 10406848 (2), 17537973 (1)

    Search CenterWatch for drugs/clinical trials and news about TNR / TENR 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    1 fRNAdb Secondary structure:


    REFSEQ mRNAs for TNR gene: 
    NM_003285.2  

    Unigene Cluster for TNR:

    Tenascin R
    Hs.659864  [show with all ESTs]
    Unigene Representative Sequence: NM_003285
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000367674(uc009wwu.1 uc010pmz.1) ENST00000422274 ENST00000263525(uc001gkp.1)


    miRNA
    Products:
         
    OriGene 3'-UTR Clone: TNR
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TNR
    8/12 QIAGEN miScript miRNA Assays for microRNAs that regulate TNR (see all 12):
    hsa-miR-3163 hsa-miR-205 hsa-miR-922 hsa-miR-7-2* hsa-miR-516b* hsa-miR-1279 hsa-miR-340 hsa-miR-656
    SwitchGear 3'UTR luciferase reporter plasmidTNR 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNR (see all 7)
    OriGene shRNA RFP: TNR
    OriGene siRNA: TNR
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNR
    Sirion Biotech Custom design and validation of potent shRNA sequences against TNR 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNR (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNR
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TNR (NM_005958)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TNR
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNR 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNR
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNR
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNR
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNR

    Additional cDNA sequence: 

    AK295823.1 BC129830.1 X98085.1 Y13359.1 Z67996.1 

    2 DOTS entries:

    DT.406347  DT.91720346 

    24/67 AceView cDNA sequences (see all 67):

    AI879057 AW160530 BF514861 BF740231 BF055935 BG007389 BF934451 BE223030 
    CD244497 AW293883 BF929429 AA931902 AA907103 H41327 BP349158 BG912903 
    CB154570 BE222657 AI298431 BX115029 BX950893 BX645837 BF924442 AV721679 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TNR expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCCAGGTTCT
    TNR Expression
    About this image
    See TNR Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TNR

    SOURCE GeneReport for Unigene cluster: Hs.659864

    UniProtKB/Swiss-Prot: TENR_HUMAN, Q92752
    Tissue specificity: Brain specific

        SABiosciences Expression via Pathway-Focused PCR Array including TNR: 
              Neurogenesis in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNR
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNR
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNR
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNR
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNR

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for TNR gene from 4/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TNR1 tenascin R (restrictin, janusin) 75.67(n)
    75.52(a)
      396213  NM_205276.2  NP_990607.2 
    lizard
    (Anolis carolinensis)
    Reptilia TNR6
    --
    77(a)
    1 ↔ 1
    4(71897527-72045815)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia BX724236.12   -- 77.3(n)    BX724236.1 
    zebrafish
    (Danio rerio)
    Actinopterygii AY286489.12   -- 73.82(n)   369191  AY286489.1 


    ENSEMBL Gene Tree for TNR (if available)
    TreeFam Gene Tree for TNR (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TNR gene
    FIBCD12  FCN32  FCN12  FCN22  TNXB2  TNN2  MFAP42  FN12  
    TNC2  ANGPTL52  
    12 SIMAP similar genes for TNR using alignment to 3 protein entries:     TENR_HUMAN (see all proteins):
    FCN3    ANGPTL2    FCN2    MFAP4    FIBCD1    FCN1
    ANGPTL7    TNN    FGL1    LFIRE1    TNC    TNXB

    TNR for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/7954 NCBI SNPs in TNR are shown (see all 7954    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs107984091,2
    C,F,A,Hunknown175590376(+) CATCTA/G/TTCTGC 1 -- int134EA NA NS WA CSA 2989
    rs57788621,2
    C,F--146811095(+) CTCACT/-TTGGC 1 -- int13Minor allele frequency- -:0.33NA 6
    rs1894811471,2
    --175291450(+) TGGGAA/GCTAGA 1 -- ds50010--------
    rs1810226661,2
    --175291452(+) GGAACC/TAGATT 1 -- ds50010--------
    rs1431545371,2
    --175291489(+) CTCTGC/GGGTCT 1 -- ds50010--------
    rs1850525901,2
    --175291615(+) TGGCCA/CATTAT 1 -- ds50010--------
    rs1466789651,2
    --175291720(+) ACCAGA/CCTGGA 1 -- ds50010--------
    rs1894276661,2
    --175291757(+) AAAAAA/GTAAAA 1 -- ds50010--------
    rs20278681,2
    C,F,A--175291823(-) CTCTCA/GTCTCA 1 -- ds500111Minor allele frequency- G:0.18NA WA CSA EA 373
    rs716452421,2
    C--175291945(+) GGCAGG/TAAAGA 1 -- ut311Minor allele frequency- T:0.50NA 2

    HapMap Linkage Disequilibrium report for TNR (175291935 - 175541935 bp, first 250kb of TNR)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 10 variations for TNR
         4 CNVs: 34421 6798 74779 4263
         6 Indels: 84664 84665 65287 74780 74778 84663
    Human Gene Mutation Database (HGMD): TNR

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNR
    DNA2.0 Custom Variant and Variant Library Synthesis for TNR

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TNR for disorders           About GeneDecksing

    OMIM gene information: 601995OMIM information: 115665 116600 121800 155600 211420 600975 605225 605606 606788 606852 606928 607317 607671 608446 608543 608553 608995    
    16 diseases for TNR:    About MalaCards
    ehlers-danlos syndrome    osteochondritis dissecans    pilocytic astrocytoma    borna disease
    multiple sclerosis    astrocytoma    medulloblastoma    hepatocellular carcinoma
    nephropathy    breast cancer    atherosclerosis    cerebritis
    neuroblastoma    schizophrenia    carcinoma    neuronitis

    1 disease from the University of Copenhagen DISEASES database for TNR:
    Ehlers-Danlos syndrome

    2 Novoseek disease relationships for TNR gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 0 1 15615725 (1)
    multiple sclerosis 0 3 10417662 (2)

    Human Genome Epidemiology (HuGE) Navigator: TNR (17 documents)

    Export disorders for TNR gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TNR gene, integrated from 9 sources (see all 100):
    (articles sorted by number of sources associating them with TNR)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Human tenascin-R: complete primary structure, pre-mRNA alternative splicing and gene localization on chromosome 1q23-q24. (PubMed id 8626505)1, 2, 3, 9 Carnemolla B.... Zardi L. (1996)
    2. The human tenascin-R gene. (PubMed id 8940128)1, 3, 9 Leprini A....Zardi L. (1996)
    3. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    4. Dissection of complex molecular interactions of neurofascin with axonin-1, F11, and tenascin-R, which promote attachment and neurite formation of tectal cells. (PubMed id 9722619)1, 9 Volkmer H....Rathjen F.G. (1998)
    5. Glycosylation of a CNS-specific extracellular matrix glycoprotein, tenascin-R, is dominated by O-linked sialylated glycans and 'brain-type' neutral N-glycans. (PubMed id 10406848)1, 9 Zamze S....Wing D.R. (1999)
    6. Parallel genotyping of 10,204 single nucleotide polym orphisms to screen for susceptible genes for IgA nephropathy. (PubMed id 19890582)1, 9 Woo K.T....Chan C.M. (2009)
    7. Hippocampal metaplasticity induced by deficiency in the extracellular matrix glycoprotein tenascin-R. (PubMed id 17537973)1, 9 Bukalo O....Dityatev A. (2007)
    8. High affinity binding and overlapping localization of neurocan and phosphacan/protein-tyrosine phosphatase-zeta/beta with tenascin-R, amphoterin, and the heparin-binding growth-associated molecule. (PubMed id 9507007)1, 9 Milev P....Margolis R.U. (1998)
    9. Assignment of the tenascin-R gene (Tnr) to mouse chromosome 4 band E2 by fluorescence in situ hybridization; refinement of the human TNR location to chromosome 1q24. (PubMed id 9371410)1, 9 Arrigo G....Zardi L. (1997)
    10. Association of the NPAS3 gene and five other loci with response to the antipsychotic iloperidone identified in a whole genome association study. (PubMed id 18521090)1, 9 Lavedan C....Polymeropoulos M.H. (2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7143 HGNC: 11953 AceView: TNR Ensembl:ENSG00000116147 euGenes: HUgn7143
    ECgene: TNR Kegg: 7143 H-InvDB: TNR

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TNR Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for TNR Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TNR gene:
    Search GeneIP for patents involving TNR

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for TNR (Tenascin R)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Recombinant/Natural Proteins for TNR (Tenascin R)  
     Browse OriGene Antibodies   OriGene shRNA RFP for TNR  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNR   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TNR  
     OriGene Protein Over-expression Lysate for TNR   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for TNR   OriGene 3'-UTR Clone for TNR  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNR   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNR  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for TNR   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for TNR   OriGene Custom Protein Services for TNR  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TNR
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNR
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNR
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNR
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNR
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNR
     GenScript Custom Purified and Recombinant Proteins Services for TNR GenScript cDNA clones with any tag delivered in your preferred vector for TNR
     GenScript Custom Assay Services for TNR GenScript Superior Antibodies for TNR
     GenScript Custom overexpressing Cell Line Services for TNR CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in TNR promoter
     Search Chromatin IP Primers for TNR
     RT2 qPCR Primer Assay in human, mouse, rat TNR
     Search GNC Networks for TNR
     SABiosciences PCR Arrays including human, mouse, rat TNR
     Search Tocris compounds for TNR
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     TNR antibodies
     TNR proteins
     Antibodies for TNR
     See all of Abcam's Antibodies, Kits and Proteins for TNR
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     TNR Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for TNR
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TNR
     SwitchGear 3'UTR luciferase reporter plasmids for TNR
     SwitchGear Promoter luciferase reporter plasmids for TNR
     Search ThermoFisher Antibodies for TNR
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNR
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TNR
    Sirion Biotech Customized:
     stable knockdown cell line services for TNR
     inducible knockdown cell line services for TNR
     design and validation of potent shRNA sequences against TNR
     adenovirus for potent knockdown of TNR
     adenovirus for overexpression of TNR
     stable overexpressing cell line services for TNR
     inducible overexpressing cell line services for TNR
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      TNR gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4