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Aliases for TNP2 Gene

Subcategory (RNA class) for TNP2 Gene

lncRNA

Aliases for TNP2 Gene

  • Transition Protein 2 (During Histone To Protamine Replacement) 2 3
  • TP-2 3 4
  • TP2 3 4
  • Nuclear Transition Protein 2 3

External Ids for TNP2 Gene

ORGUL Members for TNP2 Gene

Summaries for TNP2 Gene

GeneCards Summary for TNP2 Gene

TNP2 (Transition Protein 2 (During Histone To Protamine Replacement)) is a Protein Coding gene, and belongs to lncRNA RNA class.

UniProtKB/Swiss-Prot for TNP2 Gene

  • In the elongating spermatids of mammals, the conversion of nucleosomal chromatin to the compact, non-nucleosomal form found in the sperm nucleus is associated with the appearance of a small set of basic chromosomal transition proteins

Gene Wiki entry for TNP2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNP2 Gene

Genomics for TNP2 Gene

Genomic Location for TNP2 Gene

Start:
11,267,748 bp from pter
End:
11,269,533 bp from pter
Size:
1,786 bases
Orientation:
Minus strand

Genomic View for TNP2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TNP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNP2 Gene

Regulatory Elements for TNP2 Gene

Proteins for TNP2 Gene

  • Protein details for TNP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q05952-STP2_HUMAN
    Recommended name:
    Nuclear transition protein 2
    Protein Accession:
    Q05952
    Secondary Accessions:
    • Q9NZB0

    Protein attributes for TNP2 Gene

    Size:
    138 amino acids
    Molecular mass:
    15641 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TNP2 Gene

Proteomics data for TNP2 Gene at MOPED

Post-translational modifications for TNP2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TNP2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TNP2 Gene

Domains for TNP2 Gene

Protein Domains for TNP2 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

STP2_HUMAN
Family:
  • Belongs to the nuclear transition protein 2 family.:
    • Q05952
genes like me logo Genes that share domains with TNP2: view

No data available for Gene Families for TNP2 Gene

Function for TNP2 Gene

Molecular function for TNP2 Gene

GENATLAS Biochemistry: transition protein 2 (in haploid spermatogenic cells during transition histone-protamine)
UniProtKB/Swiss-Prot Function: In the elongating spermatids of mammals, the conversion of nucleosomal chromatin to the compact, non-nucleosomal form found in the sperm nucleus is associated with the appearance of a small set of basic chromosomal transition proteins

Gene Ontology (GO) - Molecular Function for TNP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0008270 zinc ion binding IBA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with TNP2: view

Phenotypes for TNP2 Gene

genes like me logo Genes that share phenotypes with TNP2: view

Animal Models for TNP2 Gene

MGI Knock Outs for TNP2:

miRNA for TNP2 Gene

miRTarBase miRNAs that target TNP2

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for TNP2 Gene

Localization for TNP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TNP2 Gene

Nucleus. Chromosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TNP2 Gene COMPARTMENTS Subcellular localization image for TNP2 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for TNP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000786 nucleosome IEA --
GO:0001673 male germ cell nucleus IBA --
GO:0005634 nucleus --
genes like me logo Genes that share ontologies with TNP2: view

Pathways for TNP2 Gene

SuperPathways for TNP2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TNP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organismal development IEA --
GO:0007283 spermatogenesis IBA --
GO:0007339 binding of sperm to zona pellucida IEA --
GO:0007340 acrosome reaction IBA --
GO:0007341 penetration of zona pellucida IBA --
genes like me logo Genes that share ontologies with TNP2: view

No data available for Pathways by source for TNP2 Gene

Compounds for TNP2 Gene

(2) Novoseek inferred chemical compound relationships for TNP2 Gene

Compound -log(P) Hits PubMed IDs
protamine 90 16
zinc 0 2
genes like me logo Genes that share compounds with TNP2: view

Transcripts for TNP2 Gene

mRNA/cDNA for TNP2 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNP2 Gene

Transition protein 2 (during histone to protamine replacement):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNP2 Gene

No ASD Table

Relevant External Links for TNP2 Gene

GeneLoc Exon Structure for
TNP2
ECgene alternative splicing isoforms for
TNP2

Expression for TNP2 Gene

mRNA expression in normal human tissues for TNP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNP2 Gene

This gene is overexpressed in Testis (52.5).

SOURCE GeneReport for Unigene cluster for TNP2 Gene Hs.513349

mRNA Expression by UniProt/SwissProt for TNP2 Gene

Q05952-STP2_HUMAN
Tissue specificity: Expressed by spermatids (at protein level).
genes like me logo Genes that share expressions with TNP2: view

Orthologs for TNP2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TNP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TNP2 36
  • 97.58 (n)
  • 94.2 (a)
TNP2 37
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TNP2 36
  • 66.67 (n)
  • 48.44 (a)
TNP2 37
  • 56 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TNP2 36
  • 75.45 (n)
  • 62.79 (a)
TNP2 37
  • 50 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tnp2 16
Tnp2 37
  • 44 (a)
OneToOne
Species with no ortholog for TNP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TNP2 Gene

ENSEMBL:
Gene Tree for TNP2 (if available)
TreeFam:
Gene Tree for TNP2 (if available)

Paralogs for TNP2 Gene

No data available for Paralogs for TNP2 Gene

Variants for TNP2 Gene

Sequence variations from dbSNP and Humsavar for TNP2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs181695 -- 11,268,697(+) GTCAA(C/T)GTATC intron-variant
rs183100 -- 11,269,650(+) ACATT(A/G)GAAGA upstream-variant-2KB
rs365461 -- 11,270,069(+) TTGCC(C/G)TATGT upstream-variant-2KB
rs415595 -- 11,269,835(+) TTGTT(A/G)AGACA upstream-variant-2KB
rs416603 -- 11,270,222(+) GCCAT(A/T)CCGTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TNP2 Gene

Variant ID Type Subtype PubMed ID
nsv525548 CNV Loss 19592680

Relevant External Links for TNP2 Gene

HapMap Linkage Disequilibrium report
TNP2

Disorders for TNP2 Gene

(2) University of Copenhagen DISEASES for TNP2 Gene

(2) Novoseek inferred disease relationships for TNP2 Gene

Disease -log(P) Hits PubMed IDs
infertility male 68.8 1
infertility 30.3 1

Relevant External Links for TNP2

Genetic Association Database (GAD)
TNP2
Human Genome Epidemiology (HuGE) Navigator
TNP2
genes like me logo Genes that share disorders with TNP2: view

No data available for UniProtKB/Swiss-Prot for TNP2 Gene

Publications for TNP2 Gene

  1. The gene for human transition protein 2: nucleotide sequence, assignment to the protamine gene cluster, and evidence for its low expression. (PMID: 1385303) Schluter G. … Engel W. (Genomics 1992) 3 4 23
  2. The genes for protamine 1 and 2 (PRM1 and PRM2) and transition protein 2 (TNP2) are closely linked in the mammalian genome. (PMID: 1395729) Engel W. … SchlA1ter G. (Cytogenet. Cell Genet. 1992) 2 3 23
  3. Linkage of human spermatid-specific basic nuclear protein genes. Definition and evolution of the P1-->P2-->TP2 locus. (PMID: 8428967) Nelson J.E. … Krawetz S.A. (J. Biol. Chem. 1993) 3 4 23
  4. Expression of mRNA and protein of nucleoproteins during human spermiogenesis. (PMID: 9809674) Steger K. … Bergmann M. (Mol. Hum. Reprod. 1998) 3 4 23
  5. Identification of novel polymorphisms in the nuclear protein genes and their relationship with human sperm protamine deficiency and severe male infertility. (PMID: 16989827) Aoki V.W. … Carrell D.T. (Fertil. Steril. 2006) 3 23 49

Products for TNP2 Gene

Sources for TNP2 Gene

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