TNP1 Gene
protein-coding GIFtS : 57
GCID: GC02 M217724
transition protein 1 (during histone to protamine replacement)
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Aliasesfor TNP1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Transition Protein 1 (During Histone To Protamine Replacement) 1 2 STP-12 3 TP-12 3 TP12 Spermatid Nuclear Transition Protein 12
Export aliases for TNP1 gene to outside databases Previous GC identifers: GC02M215821 GC02M216445 GC02M217688 GC02M217926 GC02M217549 GC02M217432 GC02M209578
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Summariesfor TNP1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TNP1 : Transition protein-1 is a spermatid-specific product of the haploid genome which replaces histone and is itself replaced in the mature sperm by the protamines (see PRM1, MIM 182880; PRM2, MIM 182890) (Luerssen et al., 1990 (PubMed 2249851)).(supplied by OMIM, Mar 2008) UniProtKB/Swiss-Prot: STP1_HUMAN, P09430 Function : In the elongating spermatids of mammals, the conversion of nucleosomal chromatin to the compact,non-nucleosomal form found in the sperm nucleus is associated with the appearance of a small set of basic chromosomal transition proteins Gene Wiki entry for TNP1
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Genomic Viewsfor TNP1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_005403.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TNP1 gene promoter: SRF SRF (504 AA) NF-E2 p45 LCR-F1 C/EBPalpha YY1 Evi-1 AREB6 HSF2 NF-E2 Other transcription factors Search SABiosciences Chromatin IP Primers for TNP1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNP1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q35-q36 Ensembl cytogenetic band: 2q35 HGNC cytogenetic band: 2q35-q36 TNP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M217724: view genomic region
(about GC identifiers )
Start:
217,724,181 bp from pter
End:
217,724,787 bp from pter
Size:
607 bases
Orientation:
minus strand
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Proteinsfor TNP1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: STP1_HUMAN, P09430 (See
protein sequence )Recommended Name: Spermatid nuclear transition protein 1 Size : 55 amino acids; 6424 Da
Subcellular location : Nucleus. ChromosomeExplore the universe of human proteins at neXtProt for TNP1: NX_P09430 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P09430 TNP1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_003275.1 ENSEMBL proteins: ENSP00000236979 Human Recombinant Protein Products for TNP1: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
TNP1 for ontologies About GeneDecksing TNP1 Antibody Products: Assay Products for TNP1:
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Protein
Domains / Familiesfor TNP1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TNP1 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P09430 ProtoNet protein and cluster: P09430
1 Blocks protein family : IPB001319 Nuclear transition protein 1 UniProtKB/Swiss-Prot: STP1_HUMAN, P09430 Similarity : Belongs to the nuclear transition protein 1 family
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Functionfor TNP1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: STP1_HUMAN, P09430 Function : In the elongating spermatids of mammals, the conversion of nucleosomal chromatin to the compact,non-nucleosomal form found in the sperm nucleus is associated with the appearance of a small set of basic chromosomal transition proteins
Genatlas biochemistry entry for TNP1 : transition protein 1 (in haploid spermatogenic cells during transition histone-protamine) Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
TNP1 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for TNP1 : 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Tnp1) :
TNP1 for phenotypes About GeneDecksing Animal Models: Mouse knock-out Tnp1 tm1Mlm for TNP1Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TNP1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TNP1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TNP1 (NM_003284 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TNP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TNP1
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Pathways & Interactionsfor TNP1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Transcription_CREM signaling in testis
Pathway sources See GeneCards unified pathways Show all pathways 1 EMD Millipore Pathway for TNP1 1 GeneGo (Thomson Reuters) Pathway for TNP1
TNP1 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TNP1 STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5 Interacting proteins for TNP1 (P09430 3 ENSP00000236979 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13 ): About this table
TNP1 for ontologies About GeneDecksing
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Drugs & Compoundsfor TNP1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
TNP1 for compounds About GeneDecksing Browse Tocris compounds for TNP1 4 Novoseek chemical compound relationships for TNP1 gene About this table
Search CenterWatch for drugs/clinical trials and news about TNP1 / STP1
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Transcriptsfor TNP1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TNP1 gene: NM_003284.3 Unigene Cluster for TNP1:
Transition protein 1 (during histone to protamine replacement) Hs.3017 [show with all ESTs ] Unigene Representative Sequence: BM563653 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000236979 (uc002vgk.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TNP1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TNP1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TNP1 (NM_003284 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TNP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TNP1
Additional cDNA sequence: BC029516.1
4 DOTS entries : DT.91690070 DT.120931743
DT.408516 DT.100776396 24/70 AceView cDNA sequences (see all 70 ):
AL552806 BF059332 BE552039 AL037843 T29843 CR601312 AL037398 BF062064 AL037319 AL038317 BX117749 BF222983 BE503890 AI018791 BC029516 AI990830 NM_003284 BE504726 AW197353 BX438872 AL552771 AI652461 AI670962 BM552864 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for TNP1 About this scheme ExUns: 1a · 1b · 1c ^ 2a · 2b SP1 :           SP2 :     -      
ECgene alternative splicing isoforms for TNP1
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Expression for TNP1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TNP1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGGAGGAGCAAbout this image TNP1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Testis Seminiferous Tubules Elongated Spermatid Germ Cells, Male Gametocytes Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See TNP1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TNP1 SOURCE GeneReport for Unigene cluster: Hs.3017 UniProtKB/Swiss-Prot: STP1_HUMAN, P09430 Tissue specificity : Testis SABiosciences Custom PCR Arrays for TNP1 Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TNP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TNP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TNP1
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Orthologsfor TNP1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of human and mouse.
Orthologs for TNP1 gene from 1/5 species (see all 5 ) About this table
ENSEMBL Gene Tree for TNP1 (if available)TreeFam Gene Tree for TNP1 (if available)
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Paralogsfor TNP1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TNP1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TNP1 (217724181 - 217724787 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TNP1: -- Human Gene Mutation Database (HGMD) : TNP1 SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor TNP1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TNP1 for disorders About GeneDecksing
OMIM gene information: 190231
OMIM disorders : --4 diseases for TNP1 : About MalaCards male infertility infertility azoospermia leprosy 2 diseases from the University of Copenhagen DISEASES database for TNP1 :Male infertility Infertility 3 Novoseek disease relationships for TNP1 gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
infertility male
61.7
1
16291974 (1)
azoospermia
51.6
6
17683460 (4)
infertility
34.5
2
16989827 (1)
Genetic Association Database (GAD): TNP1 Human Genome Epidemiology (HuGE) Navigator: TNP1 (4 documents) Export disorders for TNP1 gene to outside databases
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Publicationsfor TNP1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TNP1 gene, integrated from 9 sources (see all 51 ): (articles sorted by number of sources associating them with TNP1) Utopia : connect your pdf to the dynamic world of online information
Nucleotide sequence of the gene for human transition protein 1 and its chromosomal localization on chromosome 2. (PubMed id 2249851) 1 , 2 , 3, 9 Luerssen H....Engel W. (1990) Single-nucleotide polymorphisms and mutation analyses of the TNP1 and TNP2 genes of fertile and infertile human male populations. (PubMed id 16291974) 1 , 4, 9 Miyagawa Y.... Tanaka H. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) The nucleotide sequence of human transition protein 1 cDNA. (PubMed id 3412903) 1 , 2 Luerssen H.... Engel W. (1988) Quantitative assessment of transition proteins 1, 2 spermatid-specific linker histone H1-like protein transcripts in spermatozoa from normozoospermic and asthenozoospermic men. (PubMed id 17852044) 1 , 9 Jedrzejczak P....Jagodzinski P.P. (2007) Nuclear transition protein 1 from ram elongating spermatids. Mass spectrometric characterization, primary structure and phosphorylation sites of two variants. (PubMed id 2040274) 1 , 9 Chirat F....Sautiere P. (1991) Electron microscopic in situ hybridization study of simultaneous expression of TNP1 and PRM1 genes in human spermatids. (PubMed id 11315969) 1 , 9 Siffroi J.P....Dadoune J.P. (1998) Identification of novel polymorphisms in the nuclear protein genes and their relationship with human sperm protamine deficiency and severe male infertility. (PubMed id 16989827) 1 , 9 Aoki V.W....Carrell D.T. (2006) Expression of mRNA and protein of nucleoproteins during human spermiogenesis. (PubMed id 9809674) 1 , 9 Steger K....Bergmann M. (1998) The amino acid sequence and phosphorylation sites of a boar transition protein 1. (PubMed id 8019440) 1 , 9 Akama K....Hayashi H. (1994)
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External Searches for TNP1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TNP1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TNP1 gene
(According to HUGE )
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Specialized Databases showing TNP1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for TNP1 gene: Search GeneIP for patents involving TNP1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TNP1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TNP1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TNP1 Browse OriGene genome-wide validated SYBR primer pairs OriGene Protein Over-expression Lysate for TNP1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TNP1 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TNP1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TNP1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TNP1 OriGene Custom Protein Services for TNP1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TNP1 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNP1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNP1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TNP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TNP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TNP1
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TNP1 Proteins, Antibodies, CLIAs, and ELISAs
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TNP1
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Aliases for TNP1
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Disorders / Diseases for TNP1
Domains / Families for TNP1
Drugs / Compounds for TNP1
Expression for TNP1
Function for TNP1
Genomic Views for TNP1
Intellectual Property for TNP1
Orthologs for TNP1
Paralogs for TNP1
Pathways / Interactions for TNP1
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Proteins for TNP1
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Summaries for TNP1
Transcripts for TNP1
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