Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TNP1 Gene

protein-coding   GIFtS: 57
GCID: GC02M217724

transition protein 1 (during histone to protamine replacement)

 Explore 4 diseases affiliated with
TNP1 via our new
 Human Malady Compendium 
Biological research products
for TNP1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Transition Protein 1 (During Histone To Protamine Replacement)1 2
STP-12 3
TP-12 3
TP12
Spermatid Nuclear Transition Protein 12

External Ids:    HGNC: 119511   Entrez Gene: 71412   Ensembl: ENSG000001182457   OMIM: 1902315   UniProtKB: P094303   

Export aliases for TNP1 gene to outside databases

Previous GC identifers: GC02M215821 GC02M216445 GC02M217688 GC02M217926 GC02M217549 GC02M217432 GC02M209578


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TNP1:
Transition protein-1 is a spermatid-specific product of the haploid genome which replaces histone and is itself
replaced in the mature sperm by the protamines (see PRM1, MIM 182880; PRM2, MIM 182890) (Luerssen et al., 1990 (PubMed
2249851)).(supplied by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: STP1_HUMAN, P09430
Function: In the elongating spermatids of mammals, the conversion of nucleosomal chromatin to the compact,
non-nucleosomal form found in the sperm nucleus is associated with the appearance of a small set of basic chromosomal
transition proteins

Gene Wiki entry for TNP1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_005403.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TNP1 gene promoter:
         SRF   SRF (504 AA)   NF-E2 p45   LCR-F1   C/EBPalpha   YY1   Evi-1   AREB6   HSF2   NF-E2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTNP1 promoter sequence
   Search SABiosciences Chromatin IP Primers for TNP1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNP1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q35-q36   Ensembl cytogenetic band:  2q35   HGNC cytogenetic band: 2q35-q36

TNP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TNP1 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M217724:  view genomic region     (about GC identifiers)

Start:
217,724,181 bp from pter      End:
217,724,787 bp from pter
Size:
607 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: STP1_HUMAN, P09430 (See protein sequence)
Recommended Name: Spermatid nuclear transition protein 1  
Size: 55 amino acids; 6424 Da
Subcellular location: Nucleus. Chromosome

Explore the universe of human proteins at neXtProt for TNP1: NX_P09430

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P09430

  • TNP1 Protein expression data from MOPED and PaxDb:    About this image 
    TNP1 Protein Expression
    REFSEQ proteins: NP_003275.1  
    ENSEMBL proteins: 
     ENSP00000236979  

    Human Recombinant Protein Products for TNP1: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: TNP1
    OriGene Custom Protein Services for TNP1 
    GenScript Custom Purified and Recombinant Proteins Services for TNP1
    Novus Biologicals TNP1 Proteins
    Novus Biologicals TNP1 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TNP1

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000786nucleosome IDA12743712
    GO:0001673male germ cell nucleus IEA--

    TNP1 for ontologies           About GeneDecksing



    TNP1 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for TNP1 
    GenScript Custom Superior Antibodies Services for TNP1
    Novus Biologicals TNP1 Antibodies
    Abcam antibodies for TNP1 
    Uscn Antibodies for TNP1
    Search ThermoFisher Antibodies for TNP1

    Assay Products for TNP1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for TNP1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for TNP1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TNP1 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR001319 Nuclear_transition_prot1
     IPR020062 Nuclear_transition_prot1_CS

    Graphical View of Domain Structure for InterPro Entry P09430

    ProtoNet protein and cluster: P09430

    1 Blocks protein family: IPB001319 Nuclear transition protein 1

    UniProtKB/Swiss-Prot: STP1_HUMAN, P09430
    Similarity: Belongs to the nuclear transition protein 1 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: STP1_HUMAN, P09430
    Function: In the elongating spermatids of mammals, the conversion of nucleosomal chromatin to the compact,
    non-nucleosomal form found in the sperm nucleus is associated with the appearance of a small set of basic chromosomal
    transition proteins

         Genatlas biochemistry entry for TNP1:
    transition protein 1 (in haploid spermatogenic cells during transition histone-protamine)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IMP12743712
         
    TNP1 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for TNP1:
     Cell cycle / mitosis defect 

         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Tnp1):
     reproductive system 

    TNP1 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Tnp1tm1Mlm for TNP1
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TNP1 

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TNP1
    8/10 QIAGEN miScript miRNA Assays for microRNAs that regulate TNP1 (see all 10):
    hsa-miR-34c-5p hsa-miR-181c hsa-miR-449b hsa-miR-181a hsa-miR-181d hsa-miR-449a hsa-miR-34a hsa-miR-143
    SwitchGear 3'UTR luciferase reporter plasmidTNP1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNP1 (see all 7)
    OriGene shRNA RFP: TNP1
    OriGene siRNA: TNP1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNP1
    Sirion Biotech Custom design and validation of potent shRNA sequences against TNP1 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for TNP1
    Sirion Biotech Customized adenovirus for overexpression of TNP1 
    Sirion Biotech Customized adenovirus for potent knockdown of TNP1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNP1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNP1
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TNP1 (NM_003284)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TNP1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNP1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for TNP1
    Search LifeMap BioReagents cell lines for TNP1
    Sirion Biotech Customized stable knockdown cell line services for TNP1 
    Sirion Biotech Customized inducible knockdown cell line services for TNP1
    Sirion Biotech Customized stable overexpressing cell line services for TNP1
    Sirion Biotech Customized inducible overexpressing cell line services for TNP1

    In Situ Assay
    Products:
       

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for TNP1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Transcription_CREM signaling in testis
    Transcription_CREM signaling in testis1.00
    Transcription CREM signaling in testis0.96

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for TNP1
        Transcription CREM signaling in testis


    1 GeneGo (Thomson Reuters) Pathway for TNP1
        Transcription CREM signaling in testis



    TNP1 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TNP1

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    5 Interacting proteins for TNP1 (P094303 ENSP000002369794) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PRKACAP176123, ENSP000003095914I2D: score=1 STRING: ENSP00000309591
    CSNK2A1P684003, ENSP000002172444I2D: score=1 STRING: ENSP00000217244
    PRKACBP226943, ENSP000003597194I2D: score=1 STRING: ENSP00000359719
    PRKACGP226123, ENSP000003664884I2D: score=1 STRING: ENSP00000366488
    PRKCAP172523, ENSP000002843844I2D: score=1 STRING: ENSP00000284384
    About this table

    Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000012single strand break repair IDA12743712
    GO:0006337nucleosome disassembly IMP10781074
    GO:0006338chromatin remodeling IDA12743712
    GO:0006342chromatin silencing IEP11315969
    GO:0007275multicellular organismal development IEA--

    TNP1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TNP1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TNP1
    4 Novoseek chemical compound relationships for TNP1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    protamine 85.3 17 1395729 (1), 10194639 (1), 11315969 (1), 11732576 (1) (see all 10)
    paraffin 32.1 2 8605397 (1), 17683460 (1)
    gold 0 1 10194639 (1)
    serine 0 1 2040274 (1)

    Search CenterWatch for drugs/clinical trials and news about TNP1 / STP1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TNP1 gene: 
    NM_003284.3  

    Unigene Cluster for TNP1:

    Transition protein 1 (during histone to protamine replacement)
    Hs.3017  [show with all ESTs]
    Unigene Representative Sequence: BM563653
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000236979(uc002vgk.3)

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TNP1
    8/10 QIAGEN miScript miRNA Assays for microRNAs that regulate TNP1 (see all 10):
    hsa-miR-34c-5p hsa-miR-181c hsa-miR-449b hsa-miR-181a hsa-miR-181d hsa-miR-449a hsa-miR-34a hsa-miR-143
    SwitchGear 3'UTR luciferase reporter plasmidTNP1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNP1 (see all 7)
    OriGene shRNA RFP: TNP1
    OriGene siRNA: TNP1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNP1
    Sirion Biotech Custom design and validation of potent shRNA sequences against TNP1 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNP1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNP1
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TNP1 (NM_003284)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TNP1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNP1 
    Primer
    Products:
        
    Browse OriGene genome-wide validated SYBR primer pairs
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNP1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNP1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNP1

    Additional cDNA sequence: BC029516.1 

    4 DOTS entries:

    DT.91690070  DT.120931743  DT.408516  DT.100776396 

    24/70 AceView cDNA sequences (see all 70):

    AL552806 BF059332 BE552039 AL037843 T29843 CR601312 AL037398 BF062064 
    AL037319 AL038317 BX117749 BF222983 BE503890 AI018791 BC029516 AI990830 
    NM_003284 BE504726 AW197353 BX438872 AL552771 AI652461 AI670962 BM552864 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for TNP1    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b
    SP1:                              
    SP2:              -               


    ECgene alternative splicing isoforms for TNP1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TNP1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AGGAGGAGCA
    TNP1 Expression
    About this image

    TNP1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    TestisSeminiferous TubulesElongated SpermatidGerm Cells, Male Gametocytes
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TNP1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TNP1

    SOURCE GeneReport for Unigene cluster: Hs.3017

    UniProtKB/Swiss-Prot: STP1_HUMAN, P09430
    Tissue specificity: Testis

        SABiosciences Custom PCR Arrays for TNP1
    Primer
    Products:
    Browse OriGene genome-wide validated SYBR primer pairs
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TNP1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNP1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNP1
    In Situ
    Assay Products:
     

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for TNP1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for TNP1 gene from 1/5 species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tnp11 , 5 transition protein 11, 5 89.09(n)1
    87.27(a)1
      1 (36.94 cM)5
    219581  NM_009407.21  NP_033433.11 
     730150835 


    ENSEMBL Gene Tree for TNP1 (if available)
    TreeFam Gene Tree for TNP1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/52 NCBI SNPs in TNP1 are shown (see all 52    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1150472951,2
    --217723683(+) TTTACA/CAAGAA 1 -- int11Minor allele frequency- C:0.01WA 118
    rs1471798611,2
    --217723693(+) ACATGC/TTGGTC 1 -- int10--------
    rs126943981,2
    C,F,A--217723737(+) CTAATC/ACTGCC 1 -- int112Minor allele frequency- A:0.46NA WA CSA EA 374
    rs1405541901,2
    --217723928(+) TGAATA/GCATTT 1 -- int10--------
    rs1422165001,2
    --217723943(+) CTTTTA/TTATCT 1 -- int10--------
    rs1508077531,2
    --217724078(+) TTTGAC/TATTTT 1 -- int10--------
    rs1390152401,2
    --217724209(+) AGATGC/TTGGGG 1 -- ut310--------
    rs1894896421,2
    --217724212(+) TGTTGA/GGGAAA 1 -- ut310--------
    rs1477135721,2
    C,F--217724393(+) GCTCAC/TAAGTG 2 L syn11Minor allele frequency- T:0.00NA 4550
    rs2013946031,2
    --217724404(+) GGAGCA/GGTAAT 2 R C mis10--------

    HapMap Linkage Disequilibrium report for TNP1 (217724181 - 217724787 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TNP1: --
    Human Gene Mutation Database (HGMD): TNP1

    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNP1
    DNA2.0 Custom Variant and Variant Library Synthesis for TNP1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TNP1 for disorders           About GeneDecksing

    OMIM gene information: 190231    OMIM disorders: --

    4 diseases for TNP1:    About MalaCards
    male infertility    infertility    azoospermia    leprosy

    2 diseases from the University of Copenhagen DISEASES database for TNP1:
    Male infertility     Infertility

    3 Novoseek disease relationships for TNP1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    infertility male 61.7 1 16291974 (1)
    azoospermia 51.6 6 17683460 (4)
    infertility 34.5 2 16989827 (1)

    Genetic Association Database (GAD): TNP1
    Human Genome Epidemiology (HuGE) Navigator: TNP1 (4 documents)

    Export disorders for TNP1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TNP1 gene, integrated from 9 sources (see all 51):
    (articles sorted by number of sources associating them with TNP1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Nucleotide sequence of the gene for human transition protein 1 and its chromosomal localization on chromosome 2. (PubMed id 2249851)1, 2, 3, 9 Luerssen H....Engel W. (1990)
    2. Single-nucleotide polymorphisms and mutation analyses of the TNP1 and TNP2 genes of fertile and infertile human male populations. (PubMed id 16291974)1, 4, 9 Miyagawa Y.... Tanaka H. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. The nucleotide sequence of human transition protein 1 cDNA. (PubMed id 3412903)1, 2 Luerssen H.... Engel W. (1988)
    5. Quantitative assessment of transition proteins 1, 2 spermatid-specific linker histone H1-like protein transcripts in spermatozoa from normozoospermic and asthenozoospermic men. (PubMed id 17852044)1, 9 Jedrzejczak P....Jagodzinski P.P. (2007)
    6. Nuclear transition protein 1 from ram elongating spermatids. Mass spectrometric characterization, primary structure and phosphorylation sites of two variants. (PubMed id 2040274)1, 9 Chirat F....Sautiere P. (1991)
    7. Electron microscopic in situ hybridization study of simultaneous expression of TNP1 and PRM1 genes in human spermatids. (PubMed id 11315969)1, 9 Siffroi J.P....Dadoune J.P. (1998)
    8. Identification of novel polymorphisms in the nuclear protein genes and their relationship with human sperm protamine deficiency and severe male infertility. (PubMed id 16989827)1, 9 Aoki V.W....Carrell D.T. (2006)
    9. Expression of mRNA and protein of nucleoproteins during human spermiogenesis. (PubMed id 9809674)1, 9 Steger K....Bergmann M. (1998)
    10. The amino acid sequence and phosphorylation sites of a boar transition protein 1. (PubMed id 8019440)1, 9 Akama K....Hayashi H. (1994)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7141 HGNC: 11951 AceView: TNP1 Ensembl:ENSG00000118245 euGenes: HUgn7141
    ECgene: TNP1 H-InvDB: TNP1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TNP1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for TNP1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TNP1 gene:
    Search GeneIP for patents involving TNP1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for TNP1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TNP1   Browse OriGene genome-wide validated SYBR primer pairs  
     OriGene Protein Over-expression Lysate for TNP1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for TNP1   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TNP1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TNP1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for TNP1   OriGene Custom Protein Services for TNP1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TNP1
     Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TNP1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TNP1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TNP1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TNP1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TNP1
     GenScript Custom Purified and Recombinant Proteins Services for TNP1 GenScript cDNA clones with any tag delivered in your preferred vector for TNP1
     GenScript Custom Assay Services for TNP1 GenScript Custom Superior Antibodies Services for TNP1
     GenScript Custom overexpressing Cell Line Services for TNP1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in TNP1 promoter
     Search Chromatin IP Primers for TNP1
     RT2 qPCR Primer Assay in human, mouse, rat TNP1
     Search GNC Networks for TNP1
     SABiosciences Custom PCR Arrays for TNP1
     Search Tocris compounds for TNP1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     TNP1 antibodies
     TNP1 proteins
     TNP1 lysates
     Antibodies for TNP1
     See all of Abcam's Antibodies, Kits and Proteins for TNP1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     TNP1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for TNP1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for TNP1
     SwitchGear 3'UTR luciferase reporter plasmids for TNP1
     SwitchGear Promoter luciferase reporter plasmids for TNP1
     Search ThermoFisher Antibodies for TNP1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TNP1
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TNP1
    Sirion Biotech Customized:
     stable knockdown cell line services for TNP1
     inducible knockdown cell line services for TNP1
     design and validation of potent shRNA sequences against TNP1
     adenovirus for potent knockdown of TNP1
     adenovirus for overexpression of TNP1
     stable overexpressing cell line services for TNP1
     inducible overexpressing cell line services for TNP1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      TNP1 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4