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Aliases for TNNC2 Gene

Aliases for TNNC2 Gene

  • Troponin C2, Fast Skeletal Type 2 3 5
  • Troponin C Type 2 (Fast) 2

External Ids for TNNC2 Gene

Previous GeneCards Identifiers for TNNC2 Gene

  • GC20M044180
  • GC20M044140
  • GC20M045090
  • GC20M045137
  • GC20M043885
  • GC20M044451
  • GC20M041193

Summaries for TNNC2 Gene

Entrez Gene Summary for TNNC2 Gene

  • Troponin (Tn), a key protein complex in the regulation of striated muscle contraction, is composed of 3 subunits. The Tn-I subunit inhibits actomyosin ATPase, the Tn-T subunit binds tropomyosin and Tn-C, while the Tn-C subunit binds calcium and overcomes the inhibitory action of the troponin complex on actin filaments. The protein encoded by this gene is the Tn-C subunit. [provided by RefSeq, Jul 2008]

GeneCards Summary for TNNC2 Gene

TNNC2 (Troponin C2, Fast Skeletal Type) is a Protein Coding gene. Diseases associated with TNNC2 include Distal Arthrogryposis. Among its related pathways are Calcium signaling pathway and Striated Muscle Contraction. GO annotations related to this gene include calcium ion binding and actin binding. An important paralog of this gene is TNNC1.

UniProtKB/Swiss-Prot for TNNC2 Gene

  • Troponin is the central regulatory protein of striated muscle contraction. Tn consists of three components: Tn-I which is the inhibitor of actomyosin ATPase, Tn-T which contains the binding site for tropomyosin and Tn-C. The binding of calcium to Tn-C abolishes the inhibitory action of Tn on actin filaments.

Gene Wiki entry for TNNC2 Gene

Additional gene information for TNNC2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNNC2 Gene

Genomics for TNNC2 Gene

Regulatory Elements for TNNC2 Gene

Enhancers for TNNC2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H045933 1.4 ENCODE dbSUPER 11.3 -102.6 -102585 6 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A NFYC SNX21 SPATA25 PLTP TP53RK WFDC3 FTLP1 RNU6ATAC38P RPL13P2 CCNB1IP1P2 RPL5P2
GH20H045917 1.4 Ensembl ENCODE dbSUPER 11 -85.5 -85483 4 ELF3 FOXA2 ARNT ARID4B THRB ZSCAN9 RARA EGR2 THAP11 SMARCA5 WFDC3 CTSA NEURL2 SPATA25 PLTP ZSWIM3 ACOT8 SNX21 TNNC2 UBE2C
GH20H045924 1.3 Ensembl ENCODE dbSUPER 11.2 -91.4 -91391 2 ELF3 FOXA2 ARID4B RAD21 RARA ZHX2 CEBPB KAT8 TGIF2 NFIL3 WFDC3 PLTP NEURL2 CTSA SPATA25 SNX21 TNNC2 ACOT8 ZSWIM3 UBE2C
GH20H045909 1.3 ENCODE dbSUPER 10.8 -77.2 -77212 3 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 ZNF766 SP3 SP5 PLTP SLC12A5-AS1 ZSWIM3 ACOT8 SNX21 TNNC2 UBE2C DNTTIP1 WFDC3 SLC12A5
GH20H045904 0.9 ENCODE 10.8 -71.8 -71805 2 TBP FOXA2 ATF1 INSM2 KLF17 BRCA1 RFX5 ZNF366 RCOR1 ATF7 ACOT8 ZSWIM3 SNX21 TNNC2 UBE2C PLTP DNTTIP1 WFDC3 SLC12A5 SLC12A5-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNNC2 on UCSC Golden Path with GeneCards custom track

Promoters for TNNC2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000137702 -355 1401 ZFP64 ARID4B SIN3A DMAP1 ZNF2 BRCA1 YY1 GLIS2 ATF7 PAF1

Genomic Location for TNNC2 Gene

Chromosome:
20
Start:
45,823,214 bp from pter
End:
45,833,745 bp from pter
Size:
10,532 bases
Orientation:
Minus strand

Genomic View for TNNC2 Gene

Genes around TNNC2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNNC2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNNC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNNC2 Gene

Proteins for TNNC2 Gene

  • Protein details for TNNC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P02585-TNNC2_HUMAN
    Recommended name:
    Troponin C, skeletal muscle
    Protein Accession:
    P02585
    Secondary Accessions:
    • Q6FH92

    Protein attributes for TNNC2 Gene

    Size:
    160 amino acids
    Molecular mass:
    18122 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Skeletal muscle troponin C binds four calcium ions.

neXtProt entry for TNNC2 Gene

Post-translational modifications for TNNC2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TNNC2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for TNNC2

No data available for DME Specific Peptides for TNNC2 Gene

Domains & Families for TNNC2 Gene

Gene Families for TNNC2 Gene

Protein Domains for TNNC2 Gene

Suggested Antigen Peptide Sequences for TNNC2 Gene

Graphical View of Domain Structure for InterPro Entry

P02585

UniProtKB/Swiss-Prot:

TNNC2_HUMAN :
  • Belongs to the troponin C family.
Family:
  • Belongs to the troponin C family.
genes like me logo Genes that share domains with TNNC2: view

Function for TNNC2 Gene

Molecular function for TNNC2 Gene

GENATLAS Biochemistry:
troponin C2,calcium binding subunit,component of the troponin complex forming the calcium-sensitive molecular switch that regulates striated muscle contraction in response to modifications in intracellular concentration,fast twitch skeletal muscle
UniProtKB/Swiss-Prot Function:
Troponin is the central regulatory protein of striated muscle contraction. Tn consists of three components: Tn-I which is the inhibitor of actomyosin ATPase, Tn-T which contains the binding site for tropomyosin and Tn-C. The binding of calcium to Tn-C abolishes the inhibitory action of Tn on actin filaments.

Phenotypes From GWAS Catalog for TNNC2 Gene

Gene Ontology (GO) - Molecular Function for TNNC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 contributes_to actin binding IDA 17194691
GO:0005509 calcium ion binding IBA,IEA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
GO:0048306 calcium-dependent protein binding IBA --
genes like me logo Genes that share ontologies with TNNC2: view

Phenotypes for TNNC2 Gene

genes like me logo Genes that share phenotypes with TNNC2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TNNC2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNNC2 Gene

Localization for TNNC2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TNNC2 gene
Compartment Confidence
cytoskeleton 5
cytosol 5
nucleus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TNNC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0005861 troponin complex IDA 17194691
genes like me logo Genes that share ontologies with TNNC2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TNNC2 Gene

Pathways & Interactions for TNNC2 Gene

genes like me logo Genes that share pathways with TNNC2: view

Pathways by source for TNNC2 Gene

1 BioSystems pathway for TNNC2 Gene
2 Reactome pathways for TNNC2 Gene
1 KEGG pathway for TNNC2 Gene

Gene Ontology (GO) - Biological Process for TNNC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003009 skeletal muscle contraction IDA 17194691
GO:0006937 regulation of muscle contraction TAS 2373703
GO:0030049 muscle filament sliding TAS --
genes like me logo Genes that share ontologies with TNNC2: view

No data available for SIGNOR curated interactions for TNNC2 Gene

Drugs & Compounds for TNNC2 Gene

(4) Drugs for TNNC2 Gene - From: DrugBank, DGIdb, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Felodipine Approved, Investigational Pharma Potentiation, Activator, Target, other 22
Octylphenoxy polyethoxyethanol Experimental Pharma Target 0
calcium Nutra Target, agonist 0
TIRAMSETIV Pharma 0
genes like me logo Genes that share compounds with TNNC2: view

Transcripts for TNNC2 Gene

mRNA/cDNA for TNNC2 Gene

(2) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(326) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNNC2 Gene

Troponin C type 2 (fast):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TNNC2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TNNC2 Gene

No ASD Table

Relevant External Links for TNNC2 Gene

GeneLoc Exon Structure for
TNNC2
ECgene alternative splicing isoforms for
TNNC2

Expression for TNNC2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNNC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TNNC2 Gene

This gene is overexpressed in Muscle - Skeletal (x51.6).

Protein differential expression in normal tissues from HIPED for TNNC2 Gene

This gene is overexpressed in Esophagus (30.4), Tonsil (25.7), and Stomach (8.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TNNC2 Gene



NURSA nuclear receptor signaling pathways regulating expression of TNNC2 Gene:

TNNC2

SOURCE GeneReport for Unigene cluster for TNNC2 Gene:

Hs.182421

Evidence on tissue expression from TISSUES for TNNC2 Gene

  • Muscle(5)
  • Heart(4.5)
  • Liver(4.1)
genes like me logo Genes that share expression patterns with TNNC2: view

Primer Products

No data available for Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNNC2 Gene

Orthologs for TNNC2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TNNC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TNNC2 33 34
  • 100 (n)
oppossum
(Monodelphis domestica)
Mammalia TNNC2 34
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TNNC2 33 34
  • 94.17 (n)
cow
(Bos Taurus)
Mammalia TNNC2 33 34
  • 93.5 (n)
rat
(Rattus norvegicus)
Mammalia Tnnc2 33
  • 91.46 (n)
mouse
(Mus musculus)
Mammalia Tnnc2 33 16 34
  • 90.21 (n)
chicken
(Gallus gallus)
Aves TNNC2 33 34
  • 87.71 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 41 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia tnnc2 33
  • 81.34 (n)
MGC75744 33
African clawed frog
(Xenopus laevis)
Amphibia MGC53213 33
zebrafish
(Danio rerio)
Actinopterygii tnnc2 33 34
  • 76.67 (n)
TNNC2 (2 of 2) 34
  • 76 (a)
OneToMany
tnnc 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9508 33
fruit fly
(Drosophila melanogaster)
Insecta And 34
  • 47 (a)
ManyToMany
CG31960 34
  • 41 (a)
ManyToMany
CG11165 34
  • 35 (a)
ManyToMany
CG31958 34
  • 32 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea cal-2 34
  • 40 (a)
ManyToMany
cal-1 34
  • 38 (a)
ManyToMany
cal-3 34
  • 29 (a)
ManyToMany
cal-4 34
  • 25 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CMD1 34
  • 42 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 51 (a)
OneToOne
Species where no ortholog for TNNC2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TNNC2 Gene

ENSEMBL:
Gene Tree for TNNC2 (if available)
TreeFam:
Gene Tree for TNNC2 (if available)

Paralogs for TNNC2 Gene

genes like me logo Genes that share paralogs with TNNC2: view

Variants for TNNC2 Gene

Sequence variations from dbSNP and Humsavar for TNNC2 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000528307 -- 45,823,546(+) GTGCA(A/G)TGGCA intron-variant
rs1000573167 -- 45,829,807(+) TCATC(A/G)TGTTG intron-variant
rs1000587637 -- 45,825,912(+) ACCGC(A/G)CGCAG intron-variant
rs1000654231 -- 45,827,623(+) AAGGG(C/T)GAGGC intron-variant, upstream-variant-2KB
rs1000972499 -- 45,833,754(+) ATTCT(C/T)GGGCG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TNNC2 Gene

Variant ID Type Subtype PubMed ID
nsv586132 CNV loss 21841781
nsv833990 CNV loss 17160897
nsv954045 CNV deletion 24416366

Variation tolerance for TNNC2 Gene

Residual Variation Intolerance Score: 40.1% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TNNC2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNNC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TNNC2 Gene

Disorders for TNNC2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TNNC2 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
distal arthrogryposis
  • arthrogryposis multiplex congenita
- elite association - COSMIC cancer census association via MalaCards
Search TNNC2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TNNC2

Genetic Association Database (GAD)
TNNC2
Human Genome Epidemiology (HuGE) Navigator
TNNC2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNNC2
genes like me logo Genes that share disorders with TNNC2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TNNC2 Gene

Publications for TNNC2 Gene

  1. Cloning, structural analysis, and expression of the human fast twitch skeletal muscle troponin C gene. (PMID: 2373703) Gahlmann R … Kedes L (The Journal of biological chemistry 1990) 2 3 4 22 60
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 45 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 60
  5. Differential expression of slow and fast skeletal muscle troponin C. Slow skeletal muscle troponin C is expressed in human fibroblasts. (PMID: 3166492) Gahlmann R … Kedes L (Journal of molecular biology 1988) 3 4 60

Products for TNNC2 Gene

Sources for TNNC2 Gene

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