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Aliases for TNKS2-AS1 Gene

Subcategory (RNA class) for TNKS2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TNKS2-AS1 Gene

  • TNKS2 Antisense RNA 1 (Head To Head) 2 3 5
  • TNKS2 Antisense RNA 1 2

External Ids for TNKS2-AS1 Gene

Previous GeneCards Identifiers for TNKS2-AS1 Gene

  • GC10M093545

Summaries for TNKS2-AS1 Gene

GeneCards Summary for TNKS2-AS1 Gene

TNKS2-AS1 (TNKS2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNKS2-AS1 Gene

Genomics for TNKS2-AS1 Gene

Regulatory Elements for TNKS2-AS1 Gene

Enhancers for TNKS2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F091883 1.6 FANTOM5 Ensembl ENCODE 37.5 -87.5 -87480 5.3 ZFP64 ARID4B FEZF1 ZNF48 ZNF2 ZNF121 GLIS2 ZNF263 SP3 NFYC TNKS2-AS1 TNKS2 NUDT9P1 HECTD2 FGFBP3 ENSG00000273497 GC10M091835
GH10F091795 1.1 ENCODE 45.3 -0.1 -103 4.8 PKNOX1 MLX ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 FOS ZNF263 TNKS2-AS1 TNKS2 HECTD2 SRP9P1
GH10F091587 1.8 VISTA Ensembl ENCODE 14.7 +207.1 207072 7.3 PKNOX1 SIN3A FEZF1 BRCA1 GATA2 ZNF548 FOS YY2 ZNF488 REST BTAF1 TNKS2-AS1 RPP30 FGFBP3 HECTD2 PPP1R3C TNKS2 HECTD2-AS1 LOC105378433
GH10F091683 0.8 Ensembl ENCODE 30.9 +114.0 114039 1.6 JUND SMARCA4 POLR2A BHLHE40 FOS MAFK TNKS2-AS1 TNKS2 HECTD2 GAPDHP28 GC10M091739
GH10F091651 1.1 Ensembl ENCODE 16.2 +145.3 145299 2.9 INSM2 SIN3A FEZF1 ZEB1 GLIS2 ZNF366 SCRT2 RCOR1 ZNF391 FOS TNKS2-AS1 TNKS2 GC10M091667 PPP1R3C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNKS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TNKS2-AS1 Gene

Chromosome:
10
Start:
91,782,839 bp from pter
End:
91,798,291 bp from pter
Size:
15,453 bases
Orientation:
Minus strand

Genomic View for TNKS2-AS1 Gene

Genes around TNKS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNKS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNKS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNKS2-AS1 Gene

Proteins for TNKS2-AS1 Gene

Post-translational modifications for TNKS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNKS2-AS1 Gene

Domains & Families for TNKS2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNKS2-AS1 Gene

Function for TNKS2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNKS2-AS1 Gene

Localization for TNKS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNKS2-AS1 Gene

Pathways & Interactions for TNKS2-AS1 Gene

SuperPathways for TNKS2-AS1 Gene

No Data Available

Interacting Proteins for TNKS2-AS1 Gene

Gene Ontology (GO) - Biological Process for TNKS2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNKS2-AS1 Gene

Transcripts for TNKS2-AS1 Gene

mRNA/cDNA for TNKS2-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNKS2-AS1 Gene

TNKS2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNKS2-AS1 Gene

No ASD Table

Relevant External Links for TNKS2-AS1 Gene

GeneLoc Exon Structure for
TNKS2-AS1
ECgene alternative splicing isoforms for
TNKS2-AS1

Expression for TNKS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TNKS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNKS2-AS1 Gene

This gene is overexpressed in Testis (x9.3).

SOURCE GeneReport for Unigene cluster for TNKS2-AS1 Gene:

Hs.291528
genes like me logo Genes that share expression patterns with TNKS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TNKS2-AS1 Gene

Orthologs for TNKS2-AS1 Gene

Evolution for TNKS2-AS1 Gene

ENSEMBL:
Gene Tree for TNKS2-AS1 (if available)
TreeFam:
Gene Tree for TNKS2-AS1 (if available)

No data available for Orthologs for TNKS2-AS1 Gene

Paralogs for TNKS2-AS1 Gene

No data available for Paralogs for TNKS2-AS1 Gene

Variants for TNKS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNKS2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10786018 -- 91,799,994(+) TTTAC(A/G)CTTTC intron-variant, upstream-variant-2KB
rs10881968 -- 91,790,867(+) AGACC(A/G)GAAAA intron-variant
rs111445406 -- 91,782,751(+) AGGTA(C/T)TTGCT downstream-variant-500B
rs111658817 -- 91,783,922(+) GAGGC(A/G)GAGGT intron-variant
rs111800911 -- 91,789,385(+) ATTGA(C/G)ATATT intron-variant

Relevant External Links for TNKS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNKS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNKS2-AS1 Gene

Disorders for TNKS2-AS1 Gene

Relevant External Links for TNKS2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNKS2-AS1

No disorders were found for TNKS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNKS2-AS1 Gene

Publications for TNKS2-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for TNKS2-AS1 Gene

Sources for TNKS2-AS1 Gene

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