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Aliases for TNKS2-AS1 Gene

Subcategory (RNA class) for TNKS2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TNKS2-AS1 Gene

  • TNKS2 Antisense RNA 1 (Head To Head) 2 3 5
  • TNKS2 Antisense RNA 1 2

External Ids for TNKS2-AS1 Gene

Previous GeneCards Identifiers for TNKS2-AS1 Gene

  • GC10M093545

Summaries for TNKS2-AS1 Gene

GeneCards Summary for TNKS2-AS1 Gene

TNKS2-AS1 (TNKS2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TNKS2-AS1 Gene

Genomics for TNKS2-AS1 Gene

Regulatory Elements for TNKS2-AS1 Gene

Enhancers for TNKS2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G091883 1.9 FANTOM5 Ensembl ENCODE dbSUPER 37.5 -87.4 -87422 5.1 HDGF ZFP64 ARID4B FEZF1 ZNF2 ZNF48 ZNF121 GLIS2 ZNF263 SP3 TNKS2-AS1 TNKS2 BTAF1 MARCH5 NUDT9P1 HECTD2 FGFBP3 ENSG00000273497 GC10M091835
GH10G091795 1.1 ENCODE 45.2 -0.1 -103 4.8 PKNOX1 MLX ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF143 FOS ZNF263 TNKS2-AS1 TNKS2 HECTD2 SRP9P1
GH10G091587 2.1 VISTA Ensembl ENCODE dbSUPER 14.7 +207.1 207072 7.3 PKNOX1 FOXA2 SIN3A FEZF1 ZNF766 ZNF548 FOS JUNB REST SMARCB1 RPP30 BTAF1 TNKS2-AS1 FGFBP3 HECTD2 PPP1R3C TNKS2 HECTD2-AS1 LOC105378433
GH10G091683 0.8 Ensembl ENCODE 30.9 +114.0 114039 1.6 JUND POLR2A SMARCA4 BHLHE40 FOS MAFK TNKS2-AS1 TNKS2 HECTD2 GAPDHP28 GC10M091739
GH10G091629 1.6 Ensembl ENCODE dbSUPER 15.2 +166.5 166505 4.7 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 FOS TNKS2-AS1 PPP1R3C HECTD2 TNKS2 HECTD2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TNKS2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TNKS2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000031606 991 201 ZNF639 PKNOX1 MTA2 NR2F1 CHD1 ZEB2 CTBP1 ARID3A PBX2 NR2F6
ENSR00000260809 1591 601 PKNOX1 MAZ MTA2 JUNB ZNF501 TBX21 ZNF7 JUND ARID3A ZBTB48

Genomic Location for TNKS2-AS1 Gene

Chromosome:
10
Start:
91,782,839 bp from pter
End:
91,798,291 bp from pter
Size:
15,453 bases
Orientation:
Minus strand

Genomic View for TNKS2-AS1 Gene

Genes around TNKS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TNKS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TNKS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TNKS2-AS1 Gene

Proteins for TNKS2-AS1 Gene

Post-translational modifications for TNKS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TNKS2-AS1 Gene

Domains & Families for TNKS2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TNKS2-AS1 Gene

Function for TNKS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TNKS2-AS1 Gene

Localization for TNKS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TNKS2-AS1 Gene

Pathways & Interactions for TNKS2-AS1 Gene

SuperPathways for TNKS2-AS1 Gene

No Data Available

Interacting Proteins for TNKS2-AS1 Gene

Gene Ontology (GO) - Biological Process for TNKS2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TNKS2-AS1 Gene

Transcripts for TNKS2-AS1 Gene

mRNA/cDNA for TNKS2-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TNKS2-AS1 Gene

TNKS2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TNKS2-AS1 Gene

No ASD Table

Relevant External Links for TNKS2-AS1 Gene

GeneLoc Exon Structure for
TNKS2-AS1
ECgene alternative splicing isoforms for
TNKS2-AS1

Expression for TNKS2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TNKS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TNKS2-AS1 Gene

This gene is overexpressed in Testis (x9.3).

SOURCE GeneReport for Unigene cluster for TNKS2-AS1 Gene:

Hs.291528
genes like me logo Genes that share expression patterns with TNKS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TNKS2-AS1 Gene

Orthologs for TNKS2-AS1 Gene

Evolution for TNKS2-AS1 Gene

ENSEMBL:
Gene Tree for TNKS2-AS1 (if available)
TreeFam:
Gene Tree for TNKS2-AS1 (if available)

No data available for Orthologs for TNKS2-AS1 Gene

Paralogs for TNKS2-AS1 Gene

No data available for Paralogs for TNKS2-AS1 Gene

Variants for TNKS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TNKS2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000306649 -- 91,797,644(+) AAGCA(C/T)GAAAA intron-variant, upstream-variant-2KB
rs1000383920 -- 91,785,162(+) TAAAT(G/T)AAGAG intron-variant
rs1000643824 -- 91,798,635(+) GGGGC(C/G)GGGGC upstream-variant-2KB, utr-variant-5-prime
rs1000715473 -- 91,798,493(+) GGGGC(A/C)GCCGG upstream-variant-2KB, utr-variant-5-prime
rs1000839515 -- 91,784,693(+) TCAAA(C/T)ATACA intron-variant

Relevant External Links for TNKS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TNKS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TNKS2-AS1 Gene

Disorders for TNKS2-AS1 Gene

Relevant External Links for TNKS2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TNKS2-AS1

No disorders were found for TNKS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TNKS2-AS1 Gene

Publications for TNKS2-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for TNKS2-AS1 Gene

Sources for TNKS2-AS1 Gene

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